The Physiological Ecology of the Zebra Mussel, Dreissena polymorpha, in North America and Europe

SYNOPSIS. The zebra mussel, Dreissena polymorpha (Pallas), wasintroduced into North America in 1986. Initial North American(N.A.) studies suggested that physiological responses variedbetween N.A. and European populations. However, literature reviewindicates agreement on most aspects of physiological adaptationincluding: respiratory responses; hypoxia/anoxia tolerance;salinity limits; emersion tolerance; freezing resistance; environmentalpH limits; calcium limits; starvation responses; and bioenergeticpartitioning. The main differences among N.A. and European musselsappear to be elevated upper thermal limits and temperaturesfor optimum growth among N.A. populations. N.A. zebra musselsprobably originated from the northern shore of the Black Seain the warmest portion of the mussel's European range. However,most European physiological data come from northern Europe wherepopulations may be adapted to colder temperatures. Alternatively,N.A. research suggests that mussels may have a capacity forseasonal temperature acclimatization such that responses recordedin warmer N.A. waters may be different from those recorded innorthern Europe even after short-term laboratory acclimation.Studies of genetic variation and physiological response amongEuropean and N.A. D. polymorpha populations are required toelucidate the basis for physiological differentiation. Recentlyevolved D. polymorpha has poor resistance adaptations comparedto unionacean and sphaeriid bivalves with longer freshwaterfossil histories. Poor resistance adaptations make it less suitedfor stable habitats, instead, its high fecundities, early maturity,and rapid growth are adaptations to unstable habitats whereextensive resistance adaptations are of little value.     

Increases in the evolutionary potential of upper thermal limits under warmer temperatures in two rainforest Drosophila species

Tropical and subtropical species represent the majority of biodiversity. These species are predicted to lack the capacity to evolve higher thermal limits in response to selection imposed by climatic change. However, these assessments have relied on indirect estimates of adaptive capacity, using conditions that do not reflect environmental changes projected under climate change. Using a paternal half‐sib full‐sib breeding design, we estimated the additive genetic variance and narrow‐sense heritability for adult upper thermal limits in two rainforest‐restricted species of Drosophila reared under two thermal regimes, reflecting increases in seasonal temperature projected for the Wet Tropics of Australia and under standard laboratory conditions (constant 25°C). Estimates of additive genetic variation and narrow‐sense heritability for adult heat tolerance were significantly different from zero in both species under projected summer, but not winter or constant, thermal regimes. In contrast, significant broad‐sense genetic variation was apparent in all thermal regimes for egg‐to‐adult viability. Environment‐dependent changes in the expression of genetic variation for adult upper thermal limits suggest that predicting adaptive responses to climate change will be difficult. Estimating adaptive capacity under conditions that do not reflect future environmental conditions may provide limited insight into evolutionary responses to climate change.     

Selective phenotyping for increased efficiency in genetic mapping studies

The power of a genetic mapping study depends on the heritability of the trait, the number of individuals included in the analysis, and the genetic dissimilarity among them. In experiments that involve microarrays or other complex physiological assays, phenotyping can be expensive and time-consuming and may impose limits on the sample size. A random selection of individuals may not provide sufficient power to detect linkage until a large sample size is reached. We present an algorithm for selecting a subset of individuals solely on the basis of genotype data that can achieve substantial improvements in sensitivity compared to a random sample of the same size. The selective phenotyping method involves preferentially selecting individuals to maximize their genotypic dissimilarity. Selective phenotyping is most effective when prior knowledge of genetic architecture allows us to focus on specific genetic regions. However, it can also provide modest improvements in efficiency when applied on a whole-genome basis. Importantly, selective phenotyping does not reduce the efficiency of mapping as compared to a random sample in regions that are not considered in the selection process. In contrast to selective genotyping, inferences based solely on a selectively phenotyped population of individuals are representative of the whole population. The substantial improvement introduced by selective phenotyping is particularly useful when phenotyping is difficult or costly and thus limits the sample size in a genetic mapping study.     

Adaptive and nonadaptive plasticity in changing environments: Implications for sexual species with different life history strategies

Populations adapt to novel environmental conditions by genetic changes or phenotypic plasticity. Plastic responses are generally faster and can buffer fitness losses under variable conditions. Plasticity is typically modeled as random noise and linear reaction norms that assume simple one‐to‐one genotype–phenotype maps and no limits to the phenotypic response. Most studies on plasticity have focused on its effect on population viability. However, it is not clear, whether the advantage of plasticity depends solely on environmental fluctuations or also on the genetic and demographic properties (life histories) of populations. Here we present an individual‐based model and study the relative importance of adaptive and nonadaptive plasticity for populations of sexual species with different life histories experiencing directional stochastic climate change. Environmental fluctuations were simulated using differentially autocorrelated climatic stochasticity or noise color, and scenarios of directional climate change. Nonadaptive plasticity was simulated as a random environmental effect on trait development, while adaptive plasticity as a linear, saturating, or sinusoidal reaction norm. The last two imposed limits to the plastic response and emphasized flexible interactions of the genotype with the environment. Interestingly, this assumption led to (a) smaller phenotypic than genotypic variance in the population (many‐to‐one genotype–phenotype map) and the coexistence of polymorphisms, and (b) the maintenance of higher genetic variation—compared to linear reaction norms and genetic determinism—even when the population was exposed to a constant environment for several generations. Limits to plasticity led to genetic accommodation, when costs were negligible, and to the appearance of cryptic variation when limits were exceeded. We found that adaptive plasticity promoted population persistence under red environmental noise and was particularly important for life histories with low fecundity. Populations producing more offspring could cope with environmental fluctuations solely by genetic changes or random plasticity, unless environmental change was too fast.     

Cloning adult animals - what is the genetic age of the clones?

The rapid progress in cloning research along with its many ramifications will soon have a significant beneficial impact on basic research, agriculture, and biomedicine. However, for the nuclear transfer technology to reach its fullest potential, it is important to understand whether the cloning procedure can reverse cellular aging and generate clones with normal genetic and physiological age, similar to those produced from natural reproduction. Telomere shortening is believed to correlate with cellular aging both in vitro and in vivo. Telomere lengths in cells of cloned individuals thus may reflect their genetic age. However, controversies have developed over whether the eroded telomere in somatic cells used for nuclear transfer can be restored during the cloning process.     

Genetic explorations of recent human metabolic adaptations: hypotheses and evidence

Since humans and chimpanzees split from a common ancestor over 6 million years ago, human metabolism has changed dramatically. This change includes adaptations to a high-quality diet, the evolution of an energetically expensive brain, dramatic increases in endurance abilities, and capacity for energy storage in white adipose tissue. Human metabolism continues to evolve in modern human populations in response to local environmental and cultural selective forces. Understanding the nature of these selective forces and the physiological responses during human evolution is a compelling challenge for evolutionary biologists. The complex genetic architecture surrounding metabolic phenotypes indicates that selection probably altered allelic frequencies across many loci in populations experiencing adaptive metabolic change to fit their environment. A recent analysis supports this hypothesis, finding that classic selective sweeps at single loci were rare during the past 250 000 years of human evolution. Detection of selective signatures at multiple loci, as well as exploration of physiological adaptation to environment in humans, will require cross-disciplinary collaboration, including the incorporation of biological pathway analysis. This review explores the Thrifty Genotype Hypothesis, high-altitude adaptation, cold-resistance adaptation, and genetic evidence surrounding these proposed metabolic adaptations in an attempt to clarify current challenges and avenues for future progress.     

Temperature fluctuations during development reduce male fitness and may limit adaptive potential in tropical rainforest Drosophila

Understanding the potential for organisms to tolerate thermal stress through physiological or evolutionary responses is crucial given rapid climate change. Although climate models predict increases in both temperature mean and variance, such tolerances are typically assessed under constant conditions. We tested the effects of temperature variability during development on male fitness in the rainforest fly Drosophila birchii, by simulating thermal variation typical of the warm and cool margins of its elevational distribution, and estimated heritabilities and genetic correlations of fitness traits. Reproductive success was reduced for males reared in warm (mean 24 °C) fluctuating (±3 °C) vs. constant conditions but not in cool fluctuating conditions (mean 17 °C), although fluctuations reduced body size at both temperatures. Male reproductive success under warm fluctuating conditions was similar to that at constant 27 °C, indicating that briefly exceeding critical thermal limits has similar fitness costs to continuously stressful conditions. There was substantial heritable variation in all traits. However, reproductive success traits showed no genetic correlation between treatments reflecting temperature variation at elevational extremes, which may constrain evolutionary responses at these ecological margins. Our data suggest that even small increases in temperature variability will threaten tropical ectotherms living close to their upper thermal limits, both through direct effects on fitness and by limiting their adaptive potential.     

PICOPHYTOPLANKTON SEASONAL CYCLE AT THE SIO PIER,LA JOLLA,CALIFORNIA

The abundance of phycoerythrin‐containing cyanobacteria and picoeukaryotes in water samples from the Scripps Institution of Oceanography pier have been followed at least weekly for more than two years using flow cytometry. These cyanobacteria show a seasonal cycle with generally lower cell numbers during the winter, a “bloom” as water temperatures increase, and higher cell numbers during the summer. However the population abundance appears to be more variable and the magnitude of the annual change in cell number is less than reported for coastal Massachusetts by Waterbury et al. (1986). Isolates have been obtained from pier samples and genetic characterization using rpoC1 (RNA polymerase) sequence data is in progress. The PUB:PEB chromophore ratios of isolates assayed using fluorescence excitation spectra range from about 0.4 (low PUB) to 0.7 (mid‐PUB) for isolates grown under white light. The physiological and genetic characterization of isolates is being used to examine the similarities and differences of cyanobacterial populations from different coastal regimes. Similarly a picoeukaryote has been isolated that has a flow cytometric signature similar to the natural population. It appears to be a small nonmotile prasinophyte.     

INTERACTION OF CHLOROPLAST AND VACUOLES IN CHLAMYDOMONAS

The abundance of phycoerythrin-containing cyanobacteria and picoeukaryotes in water samples from the Scripps Institution of Oceanography pier have been followed at least weekly for more than two years using flow cytometry. These cyanobacteria show a seasonal cycle with generally lower cell numbers during the winter, a "bloom" as water temperatures increase, and higher cell numbers during the summer. However the population abundance appears to be more variable and the magnitude of the annual change in cell number is less than reported for coastal Massachusetts by Waterbury et al. (1986). Isolates have been obtained from pier samples and genetic characterization using rpoC1 (RNA polymerase) sequence data is in progress. The PUB:PEB chromophore ratios of isolates assayed using fluorescence excitation spectra range from about 0.4 (low PUB) to 0.7 (mid-PUB) for isolates grown under white light. The physiological and genetic characterization of isolates is being used to examine the similarities and differences of cyanobacterial populations from different coastal regimes. Similarly a picoeukaryote has been isolated that has a flow cytometric signature similar to the natural population. It appears to be a small nonmotile prasinophyte.     

Ecological partitioning among parapatric cryptic species

Geographic range differences among species may result from differences in their physiological tolerances. In the intertidal zone, marine and terrestrial environments intersect to create a unique habitat, across which physiological tolerance strongly influences range. Traits to cope with environmental extremes are particularly important here because many species live near their physiological limits and environmental gradients can be steep. The snail Melampus bidentatus occurs in coastal salt marshes in the western Atlantic and the Gulf of Mexico. We used sequence data from one mitochondrial (COI) and two nuclear markers (histone H3 and a mitochondrial carrier protein, MCP) to identify three cryptic species within this broad‐ranging nominal species, two of which have partially overlapping geographic ranges. High genetic diversity, low population structure, and high levels of migration within these two overlapping species suggest that historical range limitations do not entirely explain their different ranges. To identify microhabitat differences between these two species, we modelled their distributions using data from both marine and terrestrial environments. Although temperature was the largest factor setting range limits, other environmental components explained features of the ranges that temperature alone could not. In particular, the interaction of precipitation and salinity likely sets physiological limits that lead to range differences between these two cryptic species. This suggests that the response to climatic change in these snails will be mediated by changes to multiple environmental factors, and not just to temperature alone.     

Uncovering new functions for microRNAs in Caenorhabditis elegans

In the nematode Caenorhabditis elegans, microRNA (miRNA) regulation of development was first observed in the striking abnormalities of lin-4 and let-7 loss of function mutants. However, after these first two miRNA mutant phenotypes were described, progress on the identification of miRNA functions in worms slowed considerably. Recent advances reveal new functions for miRNAs in embryonic and larval development as well as in the regulation of lifespan and stress response. Results from a combination of?computational, biochemical, and genetic approaches have deepened our understanding of miRNA regulation of target mRNAs and support the hypothesis that miRNAs have an important role in ensuring the robustness of developmental and physiological pathways.     

泛基因组及其在植物功能基因组学研究中的应用

参考基因组是现代功能基因组学的核心框架,以此为基础的现代基因组学技术在过去20年对植物遗传变异发掘、功能基因克隆等研究起了巨大的推动作用.然而,越来越多的研究发现,单一或少数参考基因组不能完整代表和呈现物种或特定群体内的所有基因组变异,因此其在功能基因组学研究中应用存在很大的局限性,甚至会导致错误的结果.泛基因组是指物...     

Community assembly processes restrict the capacity for genetic adaptation under climate change

Given the magnitude and rate of ongoing climate change, the physiological capacity of species to tolerate extreme conditions will play a key role in influencing outcomes for biodiversity. It is also possible that species will respond to changes in climate by shifting their physiological tolerances, through genetic adaptation. How these processes influence biodiversity outcomes will be crucial in determining the most suitable management responses to retain diversity into the future. Here we assess how accounting for physiological tolerances, genetic adaptation and community assembly processes such as species replacement, influence projected climate change outcomes for the flora of Tasmania (all 2051 plant species). We incorporate these processes into the M‐SET metacommunity model and compare four different assumptions of species niches: realized niches, broader physiological tolerances and low or high capacity for genetic adaptation. Accounting for physiological tolerances rather than realized niches had the largest impact on projected outcomes, with 358 fewer species extinctions in the hottest climate scenario (mean = 30 extinctions). In contrast, adding the capacity for species physiological tolerances to shift through genetic adaptation resulted in little additional benefits for biodiversity outcomes, even under an optimistic level of adaptive capacity. We find that this is due largely to community assembly processes such as species replacement restricting the ability of species to persist and adapt in situ, as has been suggested from theoretical metacommunity models applied in simple artificial settings. Our results highlight the importance of accounting for species physiological tolerances and community‐level processes in biodiversity projections, while the potential role for genetic adaptation may be small, requiring further exploration in alternative contexts.     

我国哺乳动物生理生态学的一些进展和未来发展的建议

本文简要论述了我国哺乳动物生理生态学(主要是啮齿动物)的几个主要领域(方向)的研究进展,如
对环境的适应和瘦素的生理功能。根据国际发展动态,对未来一些可能的发展方向提出了建议。     

Current genetic research on groundnut in India

The progress in genetic improvement of groundnut in India during the last five decades has been possible largely due to understanding and utilizing the information generated on the genetics of various characters of the plant. The current genetic studies on groundnut in India are carried out both on qualitative and agronomically important quantitative characters. Research accomplishments which are noteworthy in these areas have been reported in this paper. However, the genetics of several characters of economic importance has not been analyzed so far. Efforts to incorporate resistance to abiotic and biotic factors have gained momentum and a large number of resistant sources have been identified for each of these constraints. Additional efforts are expected to be made on gaining insight into the genetics of resistance to abiotic stresses and insect pests among biotic stresses, where the available information is meagre. Future studies are also expected to concentrate on unravelling the relationship of economic yield with various other characters, including the physiological and biochemical ones. Molecular marker techniques hold promise for genetic analysis of groundnut, as in other crop plants.     

Global variation in thermal tolerances and vulnerability of endotherms to climate change

The relationships among species'' physiological capacities and the geographical variation of ambient climate are of key importance to understanding the distribution of life on the Earth. Furthermore, predictions of how species will respond to climate change will profit from the explicit consideration of their physiological tolerances. The climatic variability hypothesis, which predicts that climatic tolerances are broader in more variable climates, provides an analytical framework for studying these relationships between physiology and biogeography. However, direct empirical support for the hypothesis is mostly lacking for endotherms, and few studies have tried to integrate physiological data into assessments of species'' climatic vulnerability at the global scale. Here, we test the climatic variability hypothesis for endotherms, with a comprehensive dataset on thermal tolerances derived from physiological experiments, and use these data to assess the vulnerability of species to projected climate change. We find the expected relationship between thermal tolerance and ambient climatic variability in birds, but not in mammals—a contrast possibly resulting from different adaptation strategies to ambient climate via behaviour, morphology or physiology. We show that currently most of the species are experiencing ambient temperatures well within their tolerance limits and that in the future many species may be able to tolerate projected temperature increases across significant proportions of their distributions. However, our findings also underline the high vulnerability of tropical regions to changes in temperature and other threats of anthropogenic global changes. Our study demonstrates that a better understanding of the interplay among species'' physiology and the geography of climate change will advance assessments of species'' vulnerability to climate change.     

Role of microRNAs in diabetes

Diabetes is one of the most common chronic diseases in the world. Multiple and complex factors including various genetic and physiological changes can lead to type 1 and type 2 diabetes. However, the major mechanisms underlying the pathogenesis of diabetes remain obscure. With the recent discovery of microRNAs (miRNAs), these small ribonucleotides have been implicated as new players in the pathogenesis of diabetes and diabetes-associated complications. MiRNAs have been shown to regulate insulin production, insulin secretion, and insulin action. This review summarizes the recent progress in the cutting-edge research of miRNAs involved in diabetes and diabetes related complications.     

Ca^2＋激活Cl^-通道功能及分子基础研究进展

自从1983年Barish在爪蟾卵母细胞中发现钙激活的Cl^–通道以来,此种类型Cl^–通道一直在被广泛的研究,其在不同组织中的重要作用也被不断报道。但是,钙激活氯电流的分子机制一直未被阐明。直到2008年,由三个实验室分别发现了构成钙激活Cl^–通道的分子基础为跨膜蛋白16A（transmembrane protein 16A,TMEM16A）,这一发现使得人为通过基因手段调控钙激活Cl^–通道的功能与表达成为可能。该文综述了钙激活Cl^–通道在不同组织中的作用、TMEM16A的电生理和药理学特性以及TMEM16A在心肌肥厚和心衰中的可能作用,以及以Cl^–通道作为药物作用靶点的研究进展。     

重要花卉植物高密度遗传连锁图谱构建研究进展

遗传连锁图谱是以遗传标记间重组频率为基础的染色体或基因组内位点相对位置的线性排列图,高密度遗传图谱构建可实现物理图谱和遗传图谱的整合,对促进基因图位克隆具有重要作用。利用遗传图谱可有效地提高育种效率和改良品种。重要花卉植物高遗传图谱精密度尚无法满足精细定位研究的要求,百合、紫薇、郁金香、向日葵等重要花卉高密度遗传图谱构建研究较少,制约了花卉植物分子育种研究进程。概述了高密度遗传图谱构建流程及作图方法,综述了牡丹、梅花、月季、菊花、兰花、荷花、桂花等重要花卉植物遗传图谱构建研究进展,讨论了重要花卉植物高密度遗传图谱构建存在的主要问题,对今后重要花卉植物遗传图谱构建研究的发展方向及其在育种中的应用前景进行了展望,以期为花卉植物基因定位、辅助基因组组装、比较基因组学、基因克隆、分子标记辅助育种等提供参考。