New species of Stygiopontius (Copepoda, Siphonostomatoida) from a deep–sea hydrothermal vent at the East Pacific Rise

Three dirivultid copepods, Stygiopontius puxillifer sp.n . and S. appositus sp.n., unusual in having pegs along the ventral edges of the cephalosome, and S. lurniger sp.n., distinguiahcd from congeners by the modificd thorn-like seta on the second segment of the maxilliped, arc dcscrihcd from a depth of 2616 m at 21°N in the eastern Pacific.     

Bacterial and archaeal phylotypes associated with distinct mineralogical layers of a white smoker spire from a deep-sea hydrothermal vent site (9 degrees N, East Pacific Rise)

A diffusely venting chimney spire from the East Pacific Rise (9 degrees N) was analysed by petrographic thin sectioning and 16S rRNA gene cloning and sequencing in parallel, to correlate microbial community composition with mineralogy and inferred in situ conditions within the chimney mineral matrix. Both approaches indicated a zonation of the chimney spire into distinct microhabitats for different bacteria and archaea. The thermal gradient inferred from the mineral composition and porosity of the chimney was consistent with the distribution of bacterial and archaeal phylotypes in the chimney matrix. A novel phylogenetic lineage of euryarchaeota was found that co-occurred with clones related to cultured hyperthermophilic archaea. A few phylotypes related to mesophilic bacteria were found in the hot core of the chimney, indicating that seawater influx during retrieval and cooling of these highly porous structures can entrain microorganisms into chimney layers that are not their native habitat.     

Novel uncultured Epsilonproteobacteria dominate a filamentous sulphur mat from the 13 degrees N hydrothermal vent field, East Pacific Rise

Rapid growth of microbial sulphur mats have repeatedly been observed during oceanographic cruises to various deep-sea hydrothermal vent sites. The microorganisms involved in the mat formation have not been phylogenetically characterized, although the production of morphologically similar sulphur filaments by a Arcobacter strain coastal marine has been documented. An in situ collector deployed for 5 days at the 13 degrees N deep-sea hydrothermal vent site on the East Pacific Rise (EPR) was rapidly colonized by a filamentous microbial mat. Microscopic and chemical analyses revealed that the mat consisted of a network of microorganisms embedded in a mucous sulphur-rich matrix. Molecular surveys based on 16S rRNA gene and aclB genes placed all the environmental clone sequences within the Epsilonproteobacteria. Although few 16S rRNA gene sequences were affiliated with that of cultured organisms, the majority was related to uncultured representatives of the Arcobacter group (< or = 95% sequence similarity). A probe designed to target all of the identified lineages hybridized with more than 95% of the mat community. Simultaneous hybridizations with the latter probe and a probe specific to Arcobacter spp. confirmed the numerical dominance of Arcobacter-like bacteria. This study provides the first example of the prevalence and ecological significance of free-living Arcobacter at deep-sea hydrothermal vents.     

A new species of sea anemone (Cnidaria: Anthozoa: Actiniaria) from Manus Basin hydrothermal vents, South-western Pacific

During the BIOACCESS Japanese cruises (1996 & 1998), active hydrothermalism and associated vent fauna were studied on the South-eastern Rift of Manus Basin (South-western Pacific). In the PACMANUS vent field, a conspicuous vent fauna was sampled, including an actinostolid sea anemone (Actiniaria) belonging to an undescribed genus and species. Pacmanactis hashimotoi gen. et spec. nov. is here described, and represents the 9th sea anemone reported from hydrothermal vents.     

Comparative phylogeography among hydrothermal vent species along the East Pacific Rise reveals vicariant processes and population expansion in the South

The use of sequence polymorphism from individual mitochondrial genes to infer past demography has recently proved controversial because of the recurrence of selective sweeps acting over genes and the need for unlinked multilocus data sets. However, comparative analyses using several species for one gene and/or multiple genes for one species can serve as a test for potential selective effects and clarify our understanding of historical demographic effects. This study compares nucleotide polymorphisms in mitochondrial cytochrome oxidase I across seven deep-sea hydrothermal vent species that live along the volcanically active East Pacific Rise. Approximate Bayesian Computation (ABC) method, developed to trace shared vicariant events across species pairs, indicates the occurrence of two across species divergence times, and suggests that the present geographical patterns of genetic differentiation may be explained by two periods of significant population isolation. The oldest period dates back 11.6 Ma and is associated with the vent limpet Lepetodrilus elevatus , while the most recent period of isolation is 1.3 Ma, which apparently affected all species examined and coincides with a transition zone across the equator. Moreover, significant negative Tajima's D and star-like networks were observed for all southern lineages, suggesting that these lineages experienced a concomitant demographic and geographical expansion about 100 000–300 000 generations ago. This expansion may have initiated from a wave of range expansions during the secondary colonization of new sites along the Southern East Pacific Rise (founder effects below the equator) or recurrent bottleneck events because of the increase of eruptive phases associated with the higher spreading rates of the ridge in this region.     

Deep-sea nematodes (Nemata, Prochaetosomatinae): new taxa from hydrothermal vents and a polymetallic nodule formation of the Pacific (East Rise; North Fiji and Lau Basins; Clarion-Clipperton fracture zone)

Dinetia nycterobia gen. et sp. n. (Draconematidae, Prochaetosomatinae) is described from a hydrothermal site of the East Pacific Rise. The new genus is characterized by body annulation reaching lip region and including spiral amphids, cuticle not thickened in head region, cephalic adhesion tubes without expanded base located in cervical region, pharynx with terminal bulb provided with a thick cuticularized lumen wall, and posterior adhesion tubes with bell-shaped end. Dinetia nycterobia , the type species, is characterized by the number of cephalic adhesion tubes (19 in male, 15 in female) and of the 4 rows of posterior adhesion tubes (5 tubes lateral, 14–19 subventral in male, 10–15 lateral, 13–20 subventral in female) and the shape and size of the spicules. Cephalochaetosoma pacificum notium subsp. n. from the Fiji deep-sea closely resemble C. pacificum pacificum from Philippines deep-sea but differs in male by the number of sublateral posterior adhesion tubes, the shape and size of the spicules, the number of cloacal setae, the structure of the testis and in both sexes by the spiny cuticular ornamentation, the shorter labial setae and morphometric data. A new genus and new species of Draconematidae is provisionally described, based on the observation of juvenile specimens from the polymetallic nodule formation.     

Parasitism in species of Bathymodiolus (Bivalvia: Mytilidae) mussels from deep-sea seep and hydrothermal vents

Bivalve species, especially mussels, are biomass dominants in many deep-sea chemosynthetic ecosystems. As in shallow-water environments, parasites are likely to be important factors in the population dynamics of bivalve communities in chemosynthetic ecosystems, but there has been little study of parasitism in deep-sea seep or vent molluscs. In this study, parasite types, diversity, prevalence, infection density and non-infectious indicators of stress or disease as related to host age, reproductive condition, and endosymbiont density were assessed in mussels (Bathymodiolus heckerae) from 2 seep sites and mussels (B. puteoserpentis) from 2 vent sites. We identified 10 microbial or parasitic agents in histological sections. Parasite types included 3 viral-like gut inclusions, 2 rickettsia-like gill inclusions, a rickettsia-like mantle inclusion, a bacterial gill-rosette, a chlamydia-like gut inclusion, gill-dwelling ciliates, and an unidentified inclusion in gut tissues. Parasite species richness was greater in seep mussels than in vent mussels, with the seep mussels possessing 9 types of parasites compared to 2 in the vent mussels. One of the viral-like inclusions infecting the seep mussel B. heckerae was pathogenic, causing lysis of the digestive tubules. The prevalence and intensity of infection by this pathogen were greater in hosts with shell lengths less than 100 mm. Mussels from all 4 sites also exhibited intense infiltration of tissues and blood spaces by enlarged hemocytes. Hemocytic infiltration (hemocytosis) showed variable degrees of severity that were not associated with other host factors examined.     

Oncaea praeclara n. sp. (Copepoda: Poecilostomatoida) from deep-sea hydrothermal vents in the eastern Pacific

A new species of planktonic copepod, Oncaea praeclara, is describedfrom a depth of 2003–2635 m at the East Pacific Rise,the Galapagos Rift, and the Guaymas Basin in the Gulf of California.The species may be recognized by a combination of characters:its relatively large size; the long caudal ramus, which is abouttwo times longer than the anal segment and has a ratio of 4.96–6.7:1;the sexual dimorphism in the armature of the fourth segmentof the second antenna; and the labrum with a nearly straightposteroventral margin having four median teeth and lateral setules.     

Two new species of hydrothermal vent crabs of the genus Bythograea from the southern East Pacific Rise and from the Galapagos Rift (Crustacea Decapoda Brachyura Bythograeidae)

Two new species of Bythograea Williams, B. vrijenhoeki n. sp. and B. galapagensis n. sp., are described based on morphology and mitochondrial DNA comparisons. B. vrijenhoeki was collected on the southern East Pacific Rise, south of the Easter Microplate and B. galapagensis from the Galapagos Rift, from where B. intermedia de Saint Laurent was also described. Our analyses indicate that B. vrijenhoeki is the sister species of B. laubieri Guinot and Segonzac, and B. galapagensis is the sister species of B. thermydron Williams. Bythograea is now composed of six described species, all endemic to hydrothermal vents along the East Pacific Rise and from the Galapagos Rift.     

New genus and species of brachyuran crab from the southern East Pacific Rise (Crustacea Decapoda Brachyura Bythograeidae)

A new genus and species of a brachyuran crab, Allograea tomentosa n. gen. and n. sp., of the family Bythograeidae, collected at a hydrothermal vent locality south of the Easter Microplate (31 degrees 09'S) on the southern East Pacific Rise, is described. The genus Allograea is distinguished by lacking modifications of the fronto-orbital region, and by the absence of coloured fields and setal patches on the carapace and chelipeds. The body and legs are smooth but densely covered by a brown tomentum, the eyestalks are not reduced, but the cornea is unfaceted and unpigmented. Comparison of mitochondrial DNA sequences among all known bythograeid genera confirms the novelty of this taxon.     

Habitat associations of ant species (Hymenoptera: Formicidae) in a heterogeneous Mississippi landscape

Community assembly and the factors that influence it have long been a topic of interest to ecologists, but theory has yet to produce unequivocal evidence that communities assemble in predictable ways. The goal of this study was to document the relationship between ant communities and environmental variation between four habitat types. To accomplish this, ant communities and 16 environmental variables were sampled across four different habitat types in the Black Belt Prairie and Flatwoods regions in Mississippi. Furthermore, ant species were placed into functional groups for an analysis of the relationship between the assembly of ecological communities and variation in ecosystem function. A total of 20,916 ants representing 68 species was collected across the four habitat types. Nonmetric multidimensional scaling and analysis of covariance analyses both revealed three distinct ant communities, which can be characterized by habitat type: pasture, prairie, and woodland. Principle components analysis (PCA) simplified the 16 environmental variables into four principle components that explained 78% of the variation among sites. Results of multiple regression using the four PCA axes as predictor variables suggest that regional variation in soil structure, land cover type, and the presence of grazing have had major influences on ant community composition. Variation in flora and habitat architecture had smaller but significant effects on ant species diversity and functional group composition. Our results imply that restoration of native ant communities in disturbed habitats must consider how current disturbance regimens likely interact with the presence of Solenopsis to lower ant biodiversity.     

A New Archaeogastropod (Rhipidoglossa, Trochacea) from Hydrothermal Vents on the East Pacific Rise

Melanodrymia aurantiaca gen. et sp.n., a conispiral archaeogastropod of trochacean affinities, occurs on chimneys and stacks of polymetallic sulphide deposits at hydrothermal vents on the abyssal ocean floor at 21°N Latitude off Baja California, Mexico. The shell is unique in its combination of reflexed growth lines, strongly prosocline aperture, discordant sculpture, discoidal geometry and pattern of apertural angulations. The similarity in form with Paleozoic euomphalaceans and pleurotomariceans is considered superficial and the unusual shell form and simplification of shell microstructure are interpreted as evolutionary correlates of small size. The radula is unusual, but it shares many features with the rhipidoglossan radulae of four undescribed limpet-shaped species from hydrothermal vents on the East Pacific Rise. It is hypothesized that the adaptive radiation occurred in situ , late in the Tertiary or Quaternary, and from a coiled ancestor.     

Bacterial and archaeal populations at two shallow hydrothermal vents off Panarea Island (Eolian Islands, Italy)

The aim of this study was to investigate the microbial community thriving at two shallow hydrothermal vents off Panarea Island (Italy). Physico-chemical characteristics of thermal waters were examined in order to establish the effect of the vents on biodiversity of both Bacteria and Archaea. Water and adjacent sediment samples were collected at different times from two vents, characterised by different depth and temperature, and analysed to evaluate total microbial abundances, sulphur-oxidising and thermophilic aerobic bacteria. Total microbial abundances were on average of the order of 10⁵ cells ml⁻¹, expressed as picoplanktonic size fraction. Picophytoplanktonic cells accounted for 0.77–3.83% of the total picoplanktonic cells. The contribution of bacterial and archaeal taxa to prokaryotic community diversity was investigated by PCR–DGGE fingerprinting method. The number of bands derived from bacterial DNA was highest in the DGGE profiles of water sample from the warmest and deepest site (site 2). In contrast, archaeal richness was highest in the water of the coldest and shallowest site (site 1). Sulphur-oxidising bacteria were detected by both culture-dependent and -independent methods. The primary production at the shallow hydrothermal system of Panarea is supported by a complex microbial community composed by phototrophs and chemolithotrophs.     

Functional anatomy of the respiratory system of Branchipolynoe species (Polychaeta, Polynoidae), commensal with Bathymodiolus species (Bivalvia, Mytilidae) from deep-sea hydrothermal vents

 The gills of three species of Branchipolynoe have been studied in order to better understand the morphological and anatomical adaptations of their respiratory system. These Polynoidae live commensally inside the pallial cavity of different species of Bathymodiolus (Mytilidae), found clustered near deep-sea hydrothermal vents and cold seeps, and which harbor chemolithoautotrophic bacteria in their gills. As the mussels exploit hydrothermal fluid, the pallial cavity is perfused with a sulfide-rich hydrothermal water. The gills of Branchipolynoe species are well-developed branched outgrows of the body wall, located on the parapodia, and filled with coelomic fluid. They do not contain blood vessels. Living animals are red, due to the presence of extracellular hemoglobins in the coelom. The gill epidermis is made of supporting cells and a few ciliated cells arranged in longitudinal rows along the branches. Myoepithelial and ciliated cells line the interior of the coelomic cavity which contains the respiratory pigments. Coelomic fluid circulation inside the gills and body cavity is probably facilitated by both the cilia and myoepithelial contractions. The cuticle, the epidermis, and the coelomic epithelium are completely devoid of bacteria. The gill surface areas per unit body weight and the minimum diffusion distances, between external milieu and coelomic hemoglobins, have been calculated and compared with data already obtained on vascular gills of littoral or hydrothermal species of Polychaeta. In Branchipolynoe species, the respiratory surface area is very large, similar to that of a free-living hydrothermal species Alvinella pompejana, and the minimum diffusion distance is short, similar to that of the littoral species Arenicola marina. Although the organization of these coelomic gills in Branchipolynoe species is totally different from that of usual vascular gills, their characteristics represent a unique and effective respiratory system in Polynoidae which has adapted to the hypoxic and sulfide-rich micro-habitat which probably holds in the mantle cavity of vent mussels. In the gill epidermis, numerous secondary and large compound lysosomes are present which might be involved in sulfide detoxification. Accepted: 5 August 1998     

Microbial CO(2) fixation and sulfur cycling associated with low-temperature emissions at the Lilliput hydrothermal field, southern Mid-Atlantic Ridge (9 degrees S)

Lilliput was discovered in 2005 as the southernmost known hydrothermal field along the Mid-Atlantic Ridge. It is exceptional in that it lacks high-temperature venting probably because of a thickened crust. The absence of thermophilic and hyperthermophilic prokaryotes in emissions supports the argument against the presence of a hot subsurface at Lilliput, as is typically suggested for diffuse emissions from areas of high-temperature venting. The high phylogenetic diversity and novelty of bacteria observed could be because of the low-temperature influence, the distinct location of the hydrothermal field or the Bathymodiolus assemblages covering the sites of discharge. The low-temperature fluids at the Lilliput are characterized by lowered pH and slightly elevated hydrogen (16 nM) and methane ( approximately 2.6 microM) contents compared with ambient seawater. No typical hydrogen and methane oxidizing prokaryotes were detected. The higher diversity of reverse tricarboxylic acid genes and the form II RubisCO genes of the Calvin Benson-Bassham (CBB) cycle compared with the form I RubisCO genes of the CBB cycle suggests that the chemoautotrophic community is better adapted to low oxygen concentrations. Thiomicrospira spp. and Epsilonproteobacteria dominated the autotrophic community. Sulfide is the most abundant inorganic energy source (0.5 mM). Diverse bacteria were associated with sulfur cycling, including Gamma-, Delta- and Epsilonproteobacteria, with the latter being the most abundant bacteria according to fluorescence in situ hybridization. With members of various Candidate Divisions constituting for 25% of clone library sequences we suggest that their role in vent ecosystems might be more important than previously assumed and propose potential mechanisms they might be involved in at the Lilliput hydrothermal field.     

Habitat partitioning by whiting species (Sillaginidae) in coastal waters

Synopsis The ways in which the distributions of six species of whiting (Sillaginidae) in the coastal marine waters of south-western Australia are related to the type of substrate (bare sand vs. seagrass), degree of exposure of habitat, water depth and body size have been investigated. Whiting in near shore waters (< 1.5 m) were sampled using a fine-meshed seine net, while those in shallow (5–15 m) and deep (20–35 m) waters of the inner continental shelf were sampled with a trawl net. Shallow nearshore waters are shown to provide nursery habitats for five of the six whiting species. In these waters, Sillaginodes punctata, Sillago burrus, Sillago schomburgkii and Sillago vittata mainly occur in protected areas, while Sillago bassensis predominantly occupies areas that are more exposed to wave and swell activity. The first three of these species also use estuaries as nursery areas. In nearshore waters, whiting were captured almost exclusively over bare sand, rather than in interpersed beds of the seagrass Posidonia spp., presumably reflecting the fact that the dense canopies produced by the wide blades of Posidonia spp. must inhibit penetration by the benthic whiting species. As 0 + S. punctata increase in size, they tend to move offshore during the day and inshore at night. Many mature representatives of S. schomburgkii are present in nearshore areas, whereas the other four species move offshore into inner-shelf waters as they increase in length. Sillago burrus and S. vittata remain in shallow inner-shelf waters, whereas the larger S. bassensis subsequently migrate into deeper inner-shelf waters. Large Sillago bassensis thus co-occurs with Sillago robusta, which is mainly found in those deeper waters, but does not reach as large a size. The larger S. punctata occupy areas near reefs which could not be sampled by trawl netting. There are thus interspecific differences in (i) the times of recruitment of the 0 + age class into nearshore areas, (ii) the types of habitat occupied during juvenile and adult life, and (iii) the degree to which fish move into more offshore waters as they increase in length, and one species is restricted to deeper waters. The resultant partial segregation among habitats of the coastal waters of south-western Australia by different size groups of these relatively abundant whiting species presumably reduces the potential for intra- and interspecific competition amongst these species.