From QTLs for enzyme activity to candidate genes in maize

In order to facilitate the search for genes underlying QTLs (Quantitative Trait Loci), the activities of key enzymes of the carbohydrate metabolism in maize, and the concentration of their substrates or products were used as quantitative traits. For each of the chosen enzyme, i.e. ADPglucose pyrophosphorylase, sucrose-phosphate-synthase and invertases, the corresponding cDNA was available. Since biochemical traits are more closely related to gene expression than agronomic traits, co-locations could be expected between an enzyme structural gene and a QTL for its enzyme activity, and/or the corresponding product or substrate content. This approach was applied using recombinant inbred lines on leaves at 3- or 4-leaf stage, under control and water stress conditions and on grain, at maturity. Several QTLs were detected for each trait, particularly for two enzyme activities measured in mature leaves. Apparent co-locations between QTL for activity and structural locus were observed for sucrose-phosphate-synthase (chromosome 8) and acid-soluble invertase (chromosome 2 and 5). Leaf acid-soluble (vacuolar) invertase provided an interesting case since QTL, on chromosome 5, explaining 17% of variability was apparently co-located with the Ivr2 gene encoding a vacuolar invertase protein which was strongly water-stress inducible. Similarly, in grain, an amylose QTL co-located with the Sh2 gene of ADPglucose pyrophosphorylase. The reliability of this candidate was further tested through the examination of Sh2 DNA polymorphism in 46 genetically unrelated lines. A correlation was obtained between this polymorphism and kernel starch content, which further validated Sh2 as a candidate. Some improvements or alternatives to this strategy are briefly discussed.      

玉米籽粒重金属铅(Pb2+)含量的QTL定位

铅(Pb²⁺)是现存环境最大量的有毒重金属污染元素,在我国特别是西南地区种植的玉米受重金属Pb²⁺污染日益严重,已严重影响到食物安全。文章利用玉米籽粒Pb²⁺低富集自交系178和籽粒Pb²⁺高富集自交系9782杂交衍生的重组自交系群体为作图群体,利用165对SSR多态性标记,构建了总长度为1499.85 cM、标记间平均距离为9.07 cM的分子遗传图谱,对玉米籽粒Pb²⁺含量性状进行了QTL定位分析,以期为选育籽粒低富集Pb²⁺的玉米新品种提供参考。结果表明,在Pb²⁺浓度为333.32 mg/kg胁迫下,共检测到2个与籽粒Pb²⁺含量相关的QTL,分别位于玉米第1、第4号染色体,其中qPC1位于标记区间umc1661~phi002h之间,表型贡献率为11.13%,加性效应为0.062;qPC4位于umc1117~nc005之间,表型贡献率为5.55%,加性效应为-0.044。性状相关分析结果表明,籽粒中Pb²⁺含量与穗长、穗粗、行粒数、穗重和百粒重等产量性状间均未达到显著水平,表明选育玉米籽粒Pb²⁺低富集的新自交系或杂交种不一定会影响到产量性状,而且籽粒Pb²⁺含量是一个相对独立的遗传性状。     

The carotenoid and abscisic acid content of viviparous kernels and seedlings ofZea mays L.

Carotenoid and abscisic acid (ABA) levels were determined in endosperm, embryos and seedlings of wild-type and viviparous (vp) mutants ofZea mays L. Carotenoid concentrations were determined by absorption spectrometry following purification by high-performance liquid chromatography and ABA concentrations by combined gas chromatography-mass spectrometry. Lutein and zeaxanthin were the terminal carotenoids in wild-type tissue. The carotenoid profiles ofvp-1 andvp-8 tissue were similar to that of the wild type; invp-2, vp-5, vp-7 andvp-9 carotenogenesis was blocked at early stages so that xanthophylls were absent. Except forvp-1, where the ABA content was similar to the wild type, the ABA content ofvp embryos was substantially reduced, to 6–16% of the corresponding wild type. Thus, the absence of xanthophylls was associated with reduced ABA content, which was in turn correlated with vivipary. Kernels ofvp-8 had a reduced ABA content although xanthophylls were present. Seedlings of carotenoid-deficient mutants rescued from viviparous kernels contained less ABA than did wild-type seedlings grown in the same way. Furthermore, the ABA concentration of such seedlings did not increase in response to water deficit. Conversely,vp-1 seedlings contained normal levels of carotenoids and ABA. Carotenoid-deficient seedlings did not contain appreciable amounts of chlorophyll so that chloroplast development was not normal. Thus ABA-deficiency could be associated with abnormal plastid development rather than the absence of carotenoids per se.Abbreviations ABA abscisic acid - DAP days after pollination - i.d. internal diameter - FW fresh weight - GC-MS combined gas chromatography-mass spectrometry - HPLC high-performance liquid chromatography - MS mass spectrometry - vp viviparous     

Stress induction of abscisic acid in maize roots

Moderate water stresses in the range 0 to −0.6 MPa applied with PEG 6000 to excised roots of Zea mays L. var. LG 11 induced increases of up to four-fold in the amount of abscisic acid (ABA) determined in the tissue after a 12 h period of xylem exudation. The ABA concentration of xylem exudate collected after a 2 h water stress also increased by up to four-fold. Salt stresses, induced with NaCl solutions, resulted in similar increases in the ABA concentrations. ABA concentrations in both root tissue and xylem exudate were highest 4 h after removal of the stress and then declined over a subsequent 8 h period. These results are interpreted in support of the concept that root-produced ABA may have a role in the fine control of the plant's water balance.     

Identification of candidate genes for in vitro androgenesis induction in maize

Extensive studies have been conducted to understand the genetic control of in vitro androgenesis, but little is know about the genes and the mechanisms involved in the switch that allows an immature pollen grain to develop as an embryo. We have developed two maize isogenic lines with high androgenetic aptitude, named AH5-44 and AH5-49, through backcross and selection from a high-responsive DH229 line on the non-responding A188 line genetic background. The genomic structure of these two lines was precisely described with microsatellite markers. Five regions retained from the parent DH229 highly responsive to androgenesis were localised in both AH5-44 and AH5-49. Sequences expressed on microspores extracted from the four lines were amplified using a cDNA-AFLP protocol. For each line, eight culture conditions were compared: microspores extracted after tassel recovery, after 7 or 14 days in cold room and after 1–4 days of in vitro culture. This genetic and developmental screening allowed us to identify four sequences, including a new HSP70-like candidate gene. Possible implication of the identified sequences in androgenesis response is discussed.Correspondence and request for material (near isogenic line seeds and pre-amplified cDNA-AFLP samples are available for other groups to identify new sequences potentially involved in androgenesis using a larger set of primer combinations on cDNA-AFLP samples) should be addressed to P.B. (e-mail: barret@clermont.inra.fr) Sequence data from this article have been deposited in the EMBL/GenBank data libraries under accession nos. AY222837 (HSP70-like), CD766057 (E9 M1-130), CD766058 (E13 M1-550), and CD766059 (E9 M5-320)     

Effects of water stress on growth, osmotic potential and abscisic acid content of maize roots

Under water stress conditions, induced by mannitol solutions (0 to 0.66 M ) applied to the apical 12 mm of intact roots of Zea mays L. (cv. LG 11), a growth inhibition, a decrease in the osmotic potential of the cell sap and a significant accumulation of abscisic acid (ABA) were observed. When the roots were placed in a humid atmosphere after the stress, the growth rate increased again, even if elongation had been totally inhibited. Under a stress corresponding to an osmotic potential of -1.09 MPa in the solution, growth was totally inhibited, which means that the root cell turgor pressure was reduced to the yield threshold. These conditions led to the largest accumulation of ABA. The effect of water stress on the level of ABA was studied for three parts of the root. The greatest increase in ABA (about 10 fold) was obtained in the growth zone and this increase was apparently independent of the hydrolysis of the conjugated form. With a mannitol treatment of 1 h equivalent to a stress level of -1.39 MPa, a 4-fold increase in ABA efflux into the medium was obtained. These results suggest that there are interactions between water stress, root growth, osmotic potential and the ABA level. The growth under conditions of stress and the role of endogenous ABA in the control of plant metabolism, specially in the growth zone, are discussed.     

Effects of abscisic acid on nucleic acid metabolism in maize coleoptiles

Summary Following treatment with ABA an inhibition of total RNA synthesis was observed after 30 hours. Total soluble ribonuclease activity did not change during the first 8 hours, after which an increase could be observed.Separation of nucleic acids with polyacrylamide gel electrophoresis indicated that synthesis of soluble RNA was less inhibited by ABA than synthesis of ribosomal RNA.Effects of 5-FU and ABA on ribosomal RNA precursor were investigated. It could be shown that 5-FU did not inhibit ribosomal precursor synthesis, but that ABA did so.     

Candidate genes and QTLs for sugar and organic acid content in peach [ Prunus persica (L.) Batsch

The identification of genes involved in variation of peach fruit quality would assist breeders in creating new cultivars with improved fruit quality. Major genes and quantitative trait loci (QTLs) for physical and chemical components of fruit quality have already been detected, based on the peach [Prunus persica (L.) Batsch] cv. Ferjalou Jalousia^® (low-acid peach) 2 cv. Fantasia (normally-acid nectarine) F₂ intraspecific cross. Our aim was to associate these QTLs to structural genes using a candidate gene/QTL approach. Eighteen cDNAs encoding key proteins in soluble sugar and organic acid metabolic pathways as well as in cell expansion were isolated from peach fruit. A single-strand conformation polymorphism strategy based on specific cDNA-based primers was used to map the corresponding genes. Since no polymorphism could be detected in the Ferjalou Jalousia^® 2 Fantasia population, gene mapping was performed on the almond [Prunus amygdalus (P. dulcis)] cv. Texas 2 peach cv. Earlygold F₂ interspecific cross from which a saturated map was available. Twelve candidate genes were assigned to four linkage groups of the peach genome. In a second step, the previous QTL detection was enhanced by integrating anchor loci between the Ferjalou Jalousia^® 2 Fantasia and Texas 2 Earlygold maps and data from a third year of trait assessment on the Ferjalou Jalousia^® 2 Fantasia population. Comparative mapping allowed us to detect a candidate gene/QTL co-location. It involved a cDNA encoding a vacuolar H⁺-pyrophosphatase (PRUpe;Vp2) that energises solute accumulation, and QTLs for sucrose and soluble solid content. This preliminary result may be the first step in the future development of marker-assisted selection for peach fruit sucrose and soluble solid content.     

Acquisition of desiccation tolerance by isolated maize embryos exposed to different conditions: the questionable role of endogenous abscisic acid

The effect of exogenous ABA on acquisition of desiccation tolerance has been well documented for the embryos of several species. including maize ( Zea mays L.). It has also been suggested that endogenous ABA plays a role in regulating the same phenomena. To test this hypothesis, endogenous ABA was quantified by radioimmunoassay. Our results show that: (1) during embryogenesis in maize, endogenous ABA increase-concomitantly with the acquisition of desiccation tolerance: (2) ABA deficient embryos of the vp 5 mutant are desiccation intolerant, but tolerance can he induced by exogenous ABA: and (3) desiccation tolerance is acquired if desiccation sensitive embryos undergo a slow drying treatment, during which ABA increases. However, when embryos were preincubated in fluridone to prevent ABA accumulation during slow drying, desiccation tolerance was induced in spite of the low level of endogenous ABA in the embryo. Our results cast doubts on an exclusive role of ABA in the acquisition of desiccation tolerance in maize embryo.     

Mapping candidate genes for oleate biosynthesis and their association with unsaturated fatty acid seed content in soybean

The development of high-oleate soybean germplasm is hindered by the lack of knowledge of the genetic factors controlling oleate phenotypic variation. In the present study, several candidate genes implicated in oleate biosynthesis were mapped and their cosegregation with oleate, linoleate and linolenate quantitative trait loci (QTLs) was investigated. FAD2-2C, a previously described ω-6 desaturase isoform, was localized on linkage group E; whereas, a novel FAD2-2 isoform, designated as FAD2-2D, mapped on linkage group N. In addition, two isoforms were identified for the aminoalcoholphosphotransferase-encoding GmAAPT1 gene, denoted AAPT1a and AAPT1b. A database query suggested that only one functional copy of the FAD6 gene, encoding a plastid localized ω-6 desaturase, exists in the soybean genome. AAPT1a and FAD6 mapped on linkage group D1b, 23.40 cM apart. Linolenate QTLs with minor effects were identified near the FAD6 and AAPT1a markers in two segregating populations. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Response ofBrassica napus L. Microspore-derived embryos to exogenous abscisic acid and desiccation

Summary Microspore-derived embryos fromBrassica napus cv. Topas (low erucic acid) and Reston (high erucic acid) were subjected to treatment with abscisic acid (ABA) during late-stage embryo development and then dried under controlled relative humidities to mature dry seed levels of moisture. Exogenously medium-supplied ABA arrested growth and development, reduced moisture content, increased total fatty acids on a dry weight basis, and stimulated systhesis of proteins in microspore-derived embryos. ABA also resulted in a higher proportion of 22∶1 in cv. Reston (high 22∶1) and increased the level of fatty acid unsaturation in cv. Topas (low 22∶1). The accumulation of two proteins that co-migrated with cruciferin and napin on sodium dodecyl sulfate-polyacrylamide gel electrophoresis and two-dimensional gels were also promoted by exposure to ABA, and the degree of accumulation was dependent on the concentration and time of application of ABA. Controlled desiccation of microspore embryos, used to simulate normal maturation and dehydration of zygotic embryos during seed development, did not seem to cause an increase of either storage proteins, total fatty acids, or 22∶1 (in cv. Reston), suggesting that dehydration is not a prerequisite for these processes, at least in culturedBrassica embryos.