The other face of Lyell: historical biogeography in his Principles of geology

Although some excellent articles about Lyell's work have been published, they do not explicitly deal with Lyell's biogeographical conceptions. The purpose of this paper is to analyse Lyell's biogeographical model in terms of its own internal structure. Lyell tried to explain the distribution of organisms by appealing to a real cause (climate). However, he was aware that environmental conditions were clearly insufficient to explain the existence of biogeographical regions. Lyell's adherence to ecological determinism generated strong tensions within his biogeographical model. He shifted from granting a secondary weight to dispersal to assigning it a major role. By doing so, Lyell was led into an evident contradiction. A permanent tension in Lyell's ideas was generated by the prevalent explanatory pattern of his time. The explanatory model based on laws did not produce satisfactory results in biology because it did not deal with historical processes. We may conclude that the knowledge of organic distribution interested Lyell as long as it could be explained by the uniformitarian principles of his geological system. The importance of the second volume of the Principles of geology lies in its ample and systematic argumentation about the geographical distribution of organisms. Lyell established, independently from any theory about organic change, the first version of dispersalist biogeography.     

Comparative Ontogenetic Behavior and Migration of Kaluga, Huso Dauricus, and Amur Sturgeon, Acipenser Schrenckii, from the Amur River

We conducted laboratory experiments with kaluga, Huso dauricus, and Amur sturgeon, Acipenser schrenckii, to develop a conceptual model of early behavior. We daily observed embryos (first life phase after hatching) and larvae (period initiating exogenous feeding) to day-30 (late larvae) for preference of bright habitat and cover, swimming distance above the bottom, up- and downstream movement, and diel activity. Day-0 embryos of both species strongly preferred bright, open habitat and initiated a strong, downstream migration that lasted 4 days (3 day peak) for kaluga and 3 days (2 day peak) for Amur sturgeon. Kaluga migrants swam far above the bottom (150cm) on only 1 day and moved day and night; Amur sturgeon migrants swam far above the bottom (median 130cm) during 3 days and were more nocturnal than kaluga. Post-migrant embryos of both species moved day and night, but Amur sturgeon used dark, cover habitat and swam closer to the bottom than kaluga. The larva period of both species began on day 7 (cumulative temperature degree-days, 192.0 for kaluga and 171.5 for Amur sturgeon). Larvae of both species preferred open habitat. Kaluga larvae strongly preferred bright habitat, initially swam far above the bottom (median 50–105cm), and migrated downstream at night during days 10–16 (7-day migration). Amur sturgeon larvae strongly avoided illumination, had a mixed response to white substrate, swam 20–30cm above the bottom during most days, and during days 12–34 (most of the larva period) moved downstream mostly at night (23-day migration). The embryo–larva migration style of the two species likely shows convergence of non-related species for a common style in response to environmental selection in the Amur River. The embryo–larva migration style of Amur sturgeon is unique among Acipenser yet studied.     

The biology of the voleClethrionomys rufocanus: A review

The biology of the gray-sided voleClethrionomys rufocanus in Hokkaido, concerning taxonomy, morphology, phylogeny, distribution, and natural history, is reviewed. Applied issues in forest management (damage, control and census) are also mentioned. AlthoughClethrionomys rufocanus of Hokkaido was originally identified as a distinct species,Evotomys (=nowClethrionomys) bedfordiae Thomas, 1905, current literature generally refers to the gray-sided vole of Hokkaido asClethrionomys rufocanus or asC. rufocanus bedfordiae (vernacular name, the Bedford’s red-backed vole). The gray-sided vole is the most common small mammal in Hokkaido. It inhabits open areas as well as forests, and mainly feeds on green plants. The gray-sided vole has a high reproductive potential; litter size: 4–7; gestation period: 18–19 days; maturation age: 30–60 days old. Although spring-born individuals usually attain sexual maturity in their summer/fall of birth, their maturation is sometimes suppressed under high densities. The breeding season is generally from April to October, but with some regional variation.Clethrionomys rufocanus has a rather specialized diet (folivorous), particularly during winter when it feeds on bamboo grass. Many predators specialize on the grey-sided vole in Hokkaido; even the red fox, which is a typical generalist predator, selectively feeds on this vole. Damage by voles’ eating bark used to be sever on forest plantations in Hokkaido. Censuses of small rodents have been carried out for management purpose since 1954.     

Earliest Holocene vegetation history and island biogeography of the Isle of Man, British Isles

Aim To present radiocarbon dated early Holocene pollen analytical data from two sites on the northern plain of the Isle of Man and to discuss the implications of the vegetation history in relation to severance of the island from the British Isles and to identify further evidence for divergent biogeographical development previously exemplified by the survival and apparent dwarfism of late glacial Megaloceros giganteus (Giant Deer). Location The Isle of Man, British Isles. Methods Pollen analysis and AMS radiocarbon dating of late glacial to early Holocene lake sequences at Pollies and Curragh‐y‐Cowle on the northern plain of the Isle of Man. Results The pollen data indicate a prolonged period of pre‐woodland vegetation after the late Glacial/Holocene transition, which lasted for most of the first post‐glacial millennium. This persistence of pre‐forest environments meant that the expansion of Betula woodland occurred later in this part of the Isle of Man than in adjacent areas of Britain and Ireland. Conclusions The Isle of Man, in the northern Irish Sea, was isolated from Britain during the late Glacial period perhaps explaining the delayed arrival of tree species. Delayed rise of the Holocene forest compared with surrounding regions probably reflects severance of the land‐bridge with Cumbria, but also could be a function of climate changes during the early Holocene and local environmental conditions. Late survival and the dwarfism of the Megaloceros giganteus (Giant Deer) fauna is another example of biogeographical divergence during the early Holocene/late Glacial of the Isle of Man. The delayed afforestation and absence of human hunters in the Manx early Holocene offers a permissive environmental context for the as yet unproven survival of Megaloceros into the early Holocene.     

Co-phylogeography and comparative population genetics of the threatened Galápagos hawk and three ectoparasite species: ecology shapes population histories within parasite communities

Comparative microevolutionary studies of multiple parasites occurring on a single host species can help shed light on the processes underlying parasite diversification. We compared the phylogeographical histories, population genetic structures and population divergence times of three co-distributed and phylogenetically independent ectoparasitic insect species, including an amblyceran and an ischnoceran louse (Insecta: Phthiraptera), a hippoboscid fly (Insecta: Diptera) and their endemic avian host in the Galápagos Islands. The Galápagos hawk (Aves: Falconiformes: Buteo galapagoensis) is a recently arrived endemic lineage in the Galápagos Islands and its island populations are diverging evolutionarily. Each parasite species differed in relative dispersal ability and distribution within the host populations, which allowed us to make predictions about their degree of population genetic structure and whether they tracked host gene flow and colonization history among islands. To control for DNA region in comparisons across these phylogenetically distant taxa, we sequenced ~1 kb of homologous mitochondrial DNA from samples collected from all island populations of the host. Remarkably, the host was invariant across mitochondrial regions that were comparatively variable in each of the parasite species, to degrees consistent with differences in their natural histories. Differences in these natural history traits were predictably correlated with the evolutionary trajectories of each parasite species, including rates of interisland gene flow and tracking of hosts by parasites. Congruence between the population structures of the ischnoceran louse and the host suggests that the ischnoceran may yield insight into the cryptic evolutionary history of its endangered host, potentially aiding in its conservation management.     

A conspectus of the Cladocera of the subterranean waters of the world

A synthesis of current knowledge of the Cladocera living in non-surface waters is provided. For all 94 species and subspecies recorded (Dec. 1994) we give information on their ranges, ecological characteristics, and a review of literature data. We also give a historic survey of the development of concepts, identify categories among groundwater-dwelling species, and discuss their adaptations and the evolutionary lines present. Of the estimated total of c. 450 non-marine Cladocera of the world, c. 20% may occur in underground aquatic habitats, but true groundwater forms (stygobionts or stygobites) are relatively few, possibly not more than 10 species (c. 2.5% of the total). This number may increase, as attention is given to subterranean habitats outside Europe.     

Carboniferous biogeography of the bryozoan Archimedes in North America

The fenestrate bryozoan genus Archimedes apparently originated and then diversified in Early Carboniferous seas of eastern North America. Its highest species richness and greatest abundance are reached in uppermost Lower to lowest Upper Carboniferous (Chesterian) rocks of eastern North America. Following the unconformity that marks the mid‐Carboniferous eustatic event, however, it is known in North America only in Upper Carboniferous basinal deposits of the Oquirrh Mountains and in nearby regions of Utah and Nevada. It is hypothesized that Archimedes’ life‐history patterns caused the biogeographical change: dependence on fragmentation as a means of recruitment did not allow Archimedes to keep up with its rapidly migrating preferred back‐barrier environment during the numerous eustatic transgressive and regressive cycles that caused the shoreline to sweep across North America during the Late Carboniferous. The persistence of Archimedes in the Oquirrh Basin and vicinity is inferred to have resulted from its preferred back‐barrier environment migrating only locally along the relatively steep basinal slope present there during the Late Carboniferous eustatic cycles.     

No positive correlation between species and genetic diversity in European alpine grasslands dominated by Carex curvula

The distributional range of alpine plants experienced dramatic changes during the Quaternary ice ages. These changes offer many opportunities for studying the impact of habitat contraction and fragmentation on both species and genetic diversity. Here, we examined the amplified fragment length polymorphism-based genetic diversity in the sedge Carex curvula All. in relation to the species diversity of siliceous European alpine grasslands in which the sedge is dominant. We found no relationship or even a negative relationship between genetic and species diversity indices. Local species richness was associated with the regional pool size of siliceous alpine species, which was itself dependent on the extant area of suitable habitats for these species. Genetic diversity of C. curvula was primarily shaped by the presumed location of glacial refugia and the routes of post-glacial colonization. We conclude that the two levels of diversity are not positively correlated because genotypes and species do not respond similarly to the spatial dynamics of suitable habitats induced by Quaternary temperature changes.     

EVOLUTION OF PAEDOMORPHOSIS IN PLETHODONTID SALAMANDERS: ECOLOGICAL CORRELATES AND RE‐EVOLUTION OF METAMORPHOSIS

Life‐history modes can profoundly impact the biology of a species, and a classic example is the dichotomy between metamorphic (biphasic) and paedomorphic (permanently aquatic) life‐history strategies in salamanders. However, despite centuries of research on this system, several basic questions about the evolution of paedomorphosis in salamanders have not been addressed. Here, we use a nearly comprehensive, time‐calibrated phylogeny of spelerpine plethodontids to reconstruct the evolution of paedomorphosis and to test if paedomorphosis is (1) reversible; (2) associated with living in caves; (3) associated with relatively dry climatic conditions on the surface; and (4) correlated with limited range size and geographic dispersal. We find that paedomorphosis arose multiple times in spelerpines. We also find evidence for re‐evolution of metamorphosis after several million years of paedomorphosis in a lineage of Eurycea from the Edwards Plateau region of Texas. We also show for the first time using phylogenetic comparative methods that paedomorphosis is highly correlated with cave‐dwelling, arid surface environments, and small geographic range sizes, providing insights into both the causes and consequences of this major life history transition.     

A reconstruction of Palaeo‐Macaronesia,with particular reference to the long‐term biogeography of the Atlantic island laurel forests

Macaronesia is a biogeographical region comprising five Atlantic Oceanic archipelagos: the Azores, Madeira, Selvagen (Savage Islands), Canaries and Cape Verde. It has strong affinities with the Atlantic coast of the Iberian Peninsula and the north‐western fringes of Africa. This paper re‐evaluates the biogeographical history and relationships of Macaronesia in the light of geological evidence, which suggests that large and high islands may have been continuously available in the region for very much longer than is indicated by the maximum surface area of the oldest current island (27 Ma) – possibly for as long as 60 million years. We review this literature, attempting a sequential reconstruction of Palaeo‐Macaronesia from 60 Ma to the present. We consider the implications of these geological dynamics for our understanding of the history of colonization of the present islands of Macaronesia. We also evaluate the role of these archipelagos as stepping stones and as both repositories of palaeo‐endemic forms and crucibles of neo‐endemic radiations of plant and animal groups. Our principal focus is on the laurel forest communities, long considered impoverished relicts of the Palaeotropical Tethyan flora. This account is therefore contextualized by reference to the long‐term climatic and biogeographical history of Southern Europe and North Africa and by consideration of the implications of changes in land–sea configuration, climate and ocean circulation for Macaronesian biogeography. We go on to provide a synthesis of the more recent history of Macaronesian forests, which has involved a process of impoverishment of the native elements of the biota that has accelerated since human conquest of the islands. We comment briefly on these processes and on the contemporary status and varied conservation opportunities and threats facing these forests across the Macaronesian biogeographical region.     

Reproductive traits and population dynamics of benthic invertebrates indicate episodic recruitment patterns across an Arctic polar front

Climate‐induced changes in the ocean and sea ice environment of the Arctic are beginning to generate major and rapid changes in Arctic ecosystems, but the effects of directional forcing on the persistence and distribution of species remain poorly understood. Here, we examine the reproductive traits and population dynamics of the bivalve Astarte crenata and sea star Ctenodiscus crispatus across a north–south transect that intersects the polar front in the Barents Sea. Both species present large oocytes indicative of short pelagic or direct development that do not differ in size–frequency between 74.5 and 81.3º latitude. However, despite gametogenic maturity, we found low frequencies of certain size classes within populations that may indicate periodic recruitment failure. We suggest that recruitment of A. crenata could occur periodically when conditions are favorable, while populations of C. crispatus are characterized by episodic recruitment failures. Pyloric caeca indices in C. crispatus show that food uptake is greatest at, and north of, the polar front, providing credence to the view that interannual variations in the quantity and quality of primary production and its flux to the seafloor, linked to the variable extent and thickness of sea ice, are likely to be strong determinants of physiological fitness. Our findings provide evidence that the distribution and long‐term survival of species is not only a simple function of adaptive capacity to specific environmental changes, but will also be contingent on the frequency and occurrence of years where environmental conditions support reproduction and settlement.     

Ontogenetic Behavior and Migration of Volga River Russian sturgeon, Acipenser gueldenstaedtii, with a Note on Adaptive Significance of Body Color

We conducted laboratory experiments with Volga River Russian sturgeon, Acipenser gueldenstaedtii, to develop a conceptual model of early behavior. We daily observed fish from day-0 (embryos, first life interval after hatching) to day-29 feeding larvae for preference of bright habitat and cover, swimming distance above the bottom, up- and downstream movement, and diel activity. Hatchling embryos initiated a downstream migration, which suggests that predation risk of embryos at spawning sites is high. Migration peaked on days 0–5 and ceased on day 7 (8-day migration). Migrants preferred bright, open habitat and early migrants swam-up far above the bottom (maximum daily median, 140cm) in a vertical swim tube. Post-migrant embryos did not prefer bright illumination but continued to prefer white substrate, increased use of cover habitat, and swam on the bottom. Larvae initiated feeding on day 10 after 170.6 cumulative temperature degree-days. Larvae did not migrate, weakly preferred bright illumination, preferred white substrate and open habitat, and swam near the bottom (daily median 5–78cm). The lack of a strong preference by larvae for bright illumination suggests foraging relies more on olfaction than vision for locating prey. A short migration by embryos would disperse wild sturgeon from a spawning area, but larvae did not migrate, so a second later migration by juveniles disperses young sturgeon to the sea (2-step migration). Embryo and larva body color was light tan and tail color was black. The migration, behavior, and light body color of Russian sturgeon embryos was similar to species of Acipenser and Scaphirhynchus in North America and to Acipenser in Asia that migrate after hatching as embryos. The similarity in migration style and body color among species with diverse phylogenies likely reflects convergence for common adaptations across biogeographic regions.     

The biogeography of Miniopterus bats (Chiroptera: Miniopteridae) from the Comoro Archipelago inferred from mitochondrial DNA

The endemic fauna of the Comoro Archipelago is composed of a mixture of taxa originating from Africa and Madagascar. Bats are the only native land dwelling mammals on this archipelago, but the biogeographical origins for the vast majority of species within this group are ambiguous. We report here genetic analyses based on two mitochondrial DNA markers to infer the origin of Comorian bats belonging to a reputed species complex of Miniopterus that is further distributed across Africa and Madagascar. Phylogenetic reconstructions show that east African M. minor are not closely related to the insular Miniopterus of Madagascar and the Comoros (Grande Comore and Anjouan). The latter cluster into two distinct, monophyletic clades (Clade 1 and Clade 2). Representatives of these clades occur sympatrically both on the Comoros and on Madagascar, and are distinguished by a large genetic distance (K2P: 9.9% for cytochrome b). No haplotypes are shared between any islands, suggesting the absence of contemporary gene flow. Populations of the widespread Clade 1 are furthermore characterized by a significant inter‐island structure (Φ_CT = 0.249), and by high haplotype and nucleotide diversities (h = 0.90–0.98, π = 0.04–0.06). Demographic analyses of Clade 1 suggest secondary contact between two distinct phylogroups (Subclade 1 A and 1B) that reached Grande Comore and Anjouan, and a large, stable population with a long evolutionary history on Madagascar. These results and the current distribution of related lineages suggest that the Comoros were colonized independently at least two or three times by ancestors from Madagascar.     

The ancient DNA revolution: the latest era in unearthing New Zealand’s faunal history

In the 25 years since the first DNA sequences were obtained from the extinct moa, ancient DNA analyses have significantly advanced our understanding of New Zealand's unique fauna. Here, we review how DNA extracted from ancient faunal remains has provided new insights into the evolutionary histories and phylogenetic relationships of New Zealand animals, and the impacts of human activities upon their populations. Moreover, we review how ancient DNA has played a key role in improving our ability to taxonomically identify fragmentary animal remains, determine biological function within extinct species, reconstruct past faunas and communities based on DNA preserved in sediments, resolve aspects of the ecology of extinct animals and characterising prehistoric parasite faunas. As ancient DNA analyses continue to become increasingly applied, and sequencing technologies continue to improve, the next 25 years promises to provide many more exciting new insights and discoveries about New Zealand's unique fauna.     

The Holocene and Upper Pleistocene pollen sequence of Carihuela Cave, southern Spain

A new pollen sequence (ca. 15,700-1250 yr BP) is presented for three stratigraphical sections of Carihuela Cave (Granada, southeastern Spain), thus completing a record that covers from the last Interglacial to late Holocene. The Late Glacial is characterized by open landscapes with junipers and early colonisation of Quercus, while the Holocene is depicted by mixed oak forests, with a diversity of broad-leaf trees and scrub, which decrease after ca. 5470 yr BP synchronously with the expansion of xerophytes and occurrence of indicators of anthropogenic disturbance. The whole pollen record of Carihuela fits into the general trends described for reference pollen sites of southern Europe, including Padul in the province of Granada, and other sequences from Mediterranean Spain, through which the heterogeneity of environmental change increases from mid to late Holocene. We conclude that, in contrast with other regions of Spain, deciduous Quercus-dominated forests are very old in eastern Andalusia, thus conflicting with floristic phytosociological models of vegetation change that imply that monospecific Q. ilex/rotundifolia woodlands are the potential mature forest in the region. Dating results suggest that the last Neanderthals of Carihuela lived between ca. 28,440 and 21,430 yr BP, which agrees with the postulation that southern Spain was the latest refugium for this human species in Europe.     

Holocene environmental changes and the seal (Phocidae) fauna of the Baltic Sea: coming,going and staying

• 1 The occurrence of different species of seal (Phocidae) during the Holocene in north‐eastern Europe was influenced by a changing geological situation over the last 12 000 years, characterized by alternating freshwater, brackish and marine stages and by spatially and temporally limited opportunities for migration of marine species into the Baltic basin. The patterns of immigration by ringed seal Phoca hispida, harp seal Phoca groenlandica, grey seal Halichoerus grypus and harbour seal Phoca vitulina are reviewed here in order to understand present distributions and population sizes. Furthermore, the future of their populations is analysed.
• 2 Phoca hispida immigrated into the Baltic basin during its brackish Yoldia Stage at the Late Glacial/Early Holocene boundary and has persisted in some disjunct populations until now. A second immigration followed at the beginning of the Littorina Transgression – which resulted in the present stage of the Baltic Sea, obviously caused by the strong cooling event that occurred 6200 calibrated ¹⁴C years BC. Its present status is not threatened, but global warming will restrict suitable habitat.
• 3 Phoca groenlandica had a mid‐Holocene intermezzo in the Baltic Sea. Its later disappearance was probably caused by hunting of subadult animals by humans.
• 4 Halichoerus grypus and Phoca vitulina also immigrated at the beginning of the present stage of the Baltic Sea. Whereas H. grypus has been common from this beginning point until modern times, the population of P. vitulina persisted at a low level for millennia. Only since the 18th century has its population increased and spread over the whole Baltic Sea.