单细胞原生生物在海洋碳汇研究中的重要性和展望

海洋是地球上最大的碳库,通过对CO~2的固定以及与大气物质和能量的交换,海洋对全球气候的变化起到关键的调控作用。随着全球气候变化的加剧,增加海洋碳汇已经成为应对全球气候变化的热门研究课题和主要途径之一。海洋微型生物在海洋的固碳过程及碳循环中起到关键的作用,对海洋碳汇意义重大。本文综述了一类重要的海洋微型生物——单细胞原生生物在海洋碳汇研究中的重要性,分析了其中的代表——网粘菌门(Labyrintholomycota)原生生物在海洋碳循环和次级生产中的意义,并从清楚地认识海洋碳汇的过程和机制方面,提出未来该领域急需解决的科学问题和可能的研究方案,为丰富海洋碳汇研究的生物学基础提供理论依据。     

Diversity and genomics of Antarctic marine micro-organisms

Marine bacterioplanktons are thought to play a vital role in Southern Ocean ecology and ecosystem function, as they do in other ocean systems. However, our understanding of phylogenetic diversity, genome-enabled capabilities and specific adaptations to this persistently cold environment is limited. Bacterioplankton community composition shifts significantly over the annual cycle as sea ice melts and phytoplankton bloom. Microbial diversity in sea ice is better known than that of the plankton, where culture collections do not appear to represent organisms detected with molecular surveys. Broad phylogenetic groupings of Antarctic bacterioplankton such as the marine group I Crenarchaeota, alpha-Proteobacteria (Roseobacter-related and SAR-11 clusters), gamma-Proteobacteria (both cultivated and uncultivated groups) and Bacteriodetes-affiliated organisms in Southern Ocean waters are in common with other ocean systems. Antarctic SSU rRNA gene phylotypes are typically affiliated with other polar sequences. Some species such as Polaribacter irgensii and currently uncultivated gamma-Proteobacteria (Ant4D3 and Ant10A4) may flourish in Antarctic waters, though further studies are needed to address diversity on a larger scale. Insights from initial genomics studies on both cultivated organisms and genomes accessed through shotgun cloning of environmental samples suggest that there are many unique features of these organisms that facilitate survival in high-latitude, persistently cold environments.     

Exploitation of marine turtles in the Indian Ocean

Marine turtles long have been of great value to peoples of the Indian Ocean, nutritionally, economically, and culturally. Once directed primarily toward subsistence, the hunting of marine turtles for international trade has increased; today their populations are often so depleted that they are not only insignificant as resources, but are endangered. An understanding of exploitation is imperative to guarantee future populations, yet available information is sketchy. Subsistence hunting is an ambiguous term, since the most intense exploitation is for export. Historically this has involved Chelonia and Eretmochelys, whose populations are now much reduced. Yet, newly discovered populations (Lepidochelys especially) are being exploited, under the stimulus of new foreign markets (e.g., leather), and their fates seem even less hopeful than those of long-exploited populations. Moreover subsistence hunting for immediate local consumption has led to depletion of nesting and feeding populations of turtles in areas where protein sources are in great demand and human population densities high. Neither the future nor the solution to this dilemma is clear, but it is obvious that economic considerations must be carefully considered, and ecological arguments alone are insufficient to manage these resources.     

Developments in Tagging Technology and Their Contributions to the Protection of Marine Species at Risk

Electronic telemetry is making major contributions to understanding the biology and the recovery of threatened and endangered aquatic species. A variety of electronic tag systems are available, with each type having it own strengths and weaknesses. Global networking and data sharing are becoming common, and are necessary to maximize benefits from investments in telemetry infrastructure. Future technology development will advance new sensors to document specific causes contributing to species declines (e.g., predation tags and camera tags). There is a need to expand the use of telemetry, especially in developing nations, to help guide sustainable use of the oceans.     

Long-term changes in deep-water fish populations in the northeast Atlantic: a deeper reaching effect of fisheries?

A severe scarcity of life history and population data for deep-water fishes is a major impediment to successful fisheries management. Long-term data for non-target species and those living deeper than the fishing grounds are particularly rare. We analysed a unique dataset of scientific trawls made from 1977 to 1989 and from 1997 to 2002, at depths from 800 to 4800 m. Over this time, overall fish abundance fell significantly at all depths from 800 to 2500 m, considerably deeper than the maximum depth of commercial fishing (approx. 1600 m). Changes in abundance were significantly larger in species whose ranges fell at least partly within fished depths and did not appear to be consistent with any natural factors such as changes in fluxes from the surface or the abundance of potential prey. If the observed decreases in abundance are due to fishing, then its effects now extend into the lower bathyal zone, resulting in declines in areas that have been previously thought to be unaffected. A possible mechanism is impacts on the shallow parts of the ranges of fish species, resulting in declines in abundance in the lower parts of their ranges. This unexpected phenomenon has important consequences for fisheries and marine reserve management, as this would indicate that the impacts of fisheries can be transmitted into deep offshore areas that are neither routinely monitored nor considered as part of the managed fishery areas.     

南极海洋生物持久性有机污染物:水平、传递与风险评价

尽管南极被认为是远离人类污染的净土,但近年来不断发现有机氯农药、多氯联苯、多溴联苯醚和全/多氟化合物等传统和“新型”持久性有机污染物(POPs)存在于南极的非生物及生物环境中,由此引发了全球各国对南极生态系统的不断关注。POPs性质稳定,能够久存于环境中,并具有毒性,易富集于生物体内并产生一定的健康风险。为了解南极和南大洋持久性有机污染物的生物地球化学过程及其对生物种群和生态系统产生的影响,本文以南大洋典型食物链为主线并结合南极海洋生物生活习性,综述了近年来国内外学者对南极海洋食物链不同营养级生物体内POPs的研究现状,并对南极海洋生态系统POPs研究前沿和热点提出了展望。研究显示,南极地区是世界上污染程度最低的地区,但过去几十年有关南极海洋生物中POPs的类型不断增加,表明该地区受到地区内/外活动的影响日益增加。零散的研究数据以及各异的技术方法使得目前仍无法阐析POPs沿食物链传递的机制。有关南极海洋生态系统POPs动态的长期监测与评估计划亟待建立。     

The name of the father: conflict between Louis and Alexander Agassiz and the Embiotoca surfperch radiation

The surfperch genus Embiotoca currently comprises two species, Embiotoca jacksoni , the black surfperch, and Embiotoca lateralis , the striped surfperch. Originally, however, Louis Agassiz described a third species in the genus Embiotoca , the rainbow surfperch, Embiotoca caryi . This latter name was changed by Louis' son, Alexander, to Hypsurus caryi , a name that remains valid. In this study, new molecular data (3545 bp of DNA from four mitochondrial and two nuclear DNA regions) indicated that the rainbow surfperch should be retained within the genus Embiotoca , a result consistent with recent morphological data. Adaptive radiation combined with sexual selection resulting in rapid morphological changes in the rainbow surfperch may have contributed to the conflicting position of this species.     

Natural acidification changes the timing and rate of succession,alters community structure,and increases homogeneity in marine biofouling communities

Ocean acidification may have far‐reaching consequences for marine community and ecosystem dynamics, but its full impacts remain poorly understood due to the difficulty of manipulating pCO₂ at the ecosystem level to mimic realistic fluctuations that occur on a number of different timescales. It is especially unclear how quickly communities at various stages of development respond to intermediate‐scale pCO₂ change and, if high pCO₂ is relieved mid‐succession, whether past acidification effects persist, are reversed by alleviation of pCO₂ stress, or are worsened by departures from prior high pCO₂ conditions to which organisms had acclimatized. Here, we used reciprocal transplant experiments along a shallow water volcanic pCO₂ gradient to assess the importance of the timing and duration of high pCO₂ exposure (i.e., discrete events at different stages of successional development vs. continuous exposure) on patterns of colonization and succession in a benthic fouling community. We show that succession at the acidified site was initially delayed (less community change by 8 weeks) but then caught up over the next 4 weeks. These changes in succession led to homogenization of communities maintained in or transplanted to acidified conditions, and altered community structure in ways that reflected both short‐ and longer‐term acidification history. These community shifts are likely a result of interspecific variability in response to increased pCO₂ and changes in species interactions. High pCO₂ altered biofilm development, allowing serpulids to do best at the acidified site by the end of the experiment, although early (pretransplant) negative effects of pCO₂ on recruitment of these worms were still detectable. The ascidians Diplosoma sp. and Botryllus sp. settled later and were more tolerant to acidification. Overall, transient and persistent acidification‐driven changes in the biofouling community, via both past and more recent exposure, could have important implications for ecosystem function and food web dynamics.     

Footprints of climate change in the Arctic marine ecosystem

In this article, we review evidence of how climate change has already resulted in clearly discernable changes in marine Arctic ecosystems. After defining the term ‘footprint’ and evaluating the availability of reliable baseline information we review the published literature to synthesize the footprints of climate change impacts in marine Arctic ecosystems reported as of mid‐2009. We found a total of 51 reports of documented changes in Arctic marine biota in response to climate change. Among the responses evaluated were range shifts and changes in abundance, growth/condition, behaviour/phenology and community/regime shifts. Most reports concerned marine mammals, particularly polar bears, and fish. The number of well‐documented changes in planktonic and benthic systems was surprisingly low. Evident losses of endemic species in the Arctic Ocean, and in ice algae production and associated community remained difficult to evaluate due to the lack of quantitative reports of its abundance and distribution. Very few footprints of climate change were reported in the literature from regions such as the wide Siberian shelf and the central Arctic Ocean due to the limited research effort made in these ecosystems. Despite the alarming nature of warming and its strong potential effects in the Arctic Ocean the research effort evaluating the impacts of climate change in this region is rather limited.     

An updated phylogeny of the redlip blenny genus Ophioblennius

An updated molecular phylogeny of the blenny genus Ophioblennius, with a focus on two geographically disjunct morphotypes observed in Brazil, is presented. The analyses showed that specimens from the north‐eastern Brazilian coast are the endemic redlip blenny Ophioblennius trinitatis, but specimens from the southern Brazilian coast are conspecific to an undescribed east Atlantic Ocean (Gulf of Guinea) species, previously unknown in Brazil. Possible explanations for this geographical pattern include: natural larval dispersal and rafting across the Atlantic; an unknown ecological attribute that enabled this species to colonize southern Brazil; oil platforms as introduction vectors.     

A re‐evaluation of the role of killer whales Orcinus orca in a population decline of sea otters Enhydra lutris in the Aleutian Islands and a review of alternative hypotheses

• 1 During the past 15–20 years, sea otters Enhydra lutris in the Aleutian Islands, Alaska, USA, experienced a drastic decrease in population size. It has been hypothesized that an increase in killer whale Orcinus orca predation was the primary cause of this decline.
• 2 Causation of the decline by increased killer whale predation is now considered a textbook case of top‐down predator control. The purpose of this review is to re‐evaluate the evidence for killer whale predation and to review evidence for alternative causes.
• 3 The killer whale predation hypothesis is based on three lines of evidence: (i) there was an increase in the number of observed killer whale attacks on sea otters during the 1990s, coincident with a decline in sea otters, (ii) sea otter populations did not decline in areas considered inaccessible to killer whales, while they declined in adjacent areas considered accessible to killer whales, and (iii) the estimated number of attacks necessary to account for the rate of decline is similar to the observed number of attacks. Our re‐evaluation indicates that although the killer whale hypothesis is by no means disproved, the supporting data are limited and inconclusive.
• 4 Increases in shark populations in the Aleutian Islands concurrent with the sea otter population declines indicate the need for further research into the role of alternative marine predators in the population decline.
• 5 High contaminant levels observed in sea otters in the Aleutian Islands warrant further investigation into the impact of these toxins on sea otter health and vital rates, and their possible role on the population decline.
• 6 Disease has not been ruled out as a significant contributor to the population decline, particularly in the early stages of the decline.

     

印度洋表层海水石油降解菌的多样性分析

【目的】为了研究印度洋石油降解菌多样性,并获得新的石油降解菌。【方法】本研究通过印度洋表层海水样品采集、以柴油与原油1:1混合物作为碳源,从中富集、分离筛选石油降解菌,并通过PCR-DGGE对13个站点富集菌群的菌群结构进行分析。【结果】通过形态观察、生理生化反应和16SrRNA分析,共得到共29个属的51株不同的细菌,它们主要是属于α亚群和γ亚群。其中,Alcanivorax属(占18%),Novosphingobium属(占10%)和Marinobacter(占6%)Thalassospira(占6%)为主要的优势菌。通过生态多样性分析表明,Shannon-Winner指数(H)为4.57968,说明其具有较高的多样性;均匀度指数(E)为0.8664771,表示其分布比较均匀。单菌实验表明,49株具有石油降解能力其中,Sinomonas,Knoellia,Mesoflavibacter等属的细菌为首次发现有降解能力。DGGE分析表明Alcanivorax属的细菌是印度洋表层海水中的重要石油降解菌。【结论】本研究首次揭示了印度洋表层海水中石油降解菌的多样性,并获取了若干在海洋石油污染生物修复中具有应用前景的降解菌。     

Warming shelf seas drive the subtropicalization of European pelagic fish communities

Pelagic fishes are among the most ecologically and economically important fish species in European seas. In principle, these pelagic fishes have potential to demonstrate rapid abundance and distribution shifts in response to climatic variability due to their high adult motility, planktonic larval stages, and low dependence on benthic habitat for food or shelter during their life histories. Here, we provide evidence of substantial climate‐driven changes to the structure of pelagic fish communities in European shelf seas. We investigated the patterns of species‐level change using catch records from 57 870 fisheries‐independent survey trawls from across European continental shelf region between 1965 and 2012. We analysed changes in the distribution and rate of occurrence of the six most common species, and observed a strong subtropicalization of the North Sea and Baltic Sea assemblages. These areas have shifted away from cold‐water assemblages typically characterized by Atlantic herring and European sprat from the 1960s to 1980s, to warmer‐water assemblages including Atlantic mackerel, Atlantic horse mackerel, European pilchard and European anchovy from the 1990s onwards. We next investigated if warming sea temperatures have forced these changes using temporally comprehensive data from the North Sea region. Our models indicated the primary driver of change in these species has been sea surface temperatures in all cases. Together, these analyses highlight how individual species responses have combined to result in a dramatic subtropicalization of the pelagic fish assemblage of the European continental shelf.     

Diversity of Siphonaria Sowerby I, 1823 (Gastropoda,Siphonariidae) in the Seychelles Bank and beyond

Molecular phylogenetic studies have shown that the characters of the reduced shell of the false limpets of the genus Siphonaria Sowerby I, 1823 are highly variable and often insufficient for species delimitation. The taxonomy and distribution of Siphonaria in the Indian Ocean are poorly known. We sampled Siphonaria in the Seychelles Bank to check the occurrence of recorded species using DNA sequences and to study the paths through which Siphonaria species have colonised the Seychelles Bank by reconstructing their phylogenetic relationships. Analyses of a dataset comprising 16 S rRNA gene sequences of 33 specimens from the Seychelles Bank and 300 additional Siphonaria sequences from other regions from GenBank with various methods for species delimitation resulted in 19–102 primary species hypotheses. Assemble Species by Automatic Partitioning provided a conservative estimate of the species number (42) in which several indisputable species were lumped. The results of Automatic Barcode Gap Discovery depended strongly on the assumed prior maximum intraspecific divergence, whereas the tree-based methods Generalised Mixed Yule Coalescent and Poisson Tree Processes resulted in high overestimates. The specimens from the Seychelles Bank represent three clades, belonging to the Siphonaria ‘atra’ group, the Siphonaria ‘normalis’ group and a possibly undescribed species recorded previously only from Hainan. At least two of the three species recorded from the Seychelles Bank came from the east, i.e., from the Coral Triangle in the Indo-Australian Archipelago, the region with the highest marine biodiversity worldwide. A major transport mechanism across the Indian Ocean was probably the South Equatorial Current.     

Track analysis of the marine palaeofauna from the Turonian (Late Cretaceous)

Aim  To analyse the worldwide distribution patterns of Turonian marine biotas using a panbiogeographical approach.
Location  Turonian localities of southern and north-eastern Brazil, Mexico, Canada, central Europe, England and Morocco.
Method  Panbiogeographical track analysis.
Results  Nine generalized tracks and six nodes were found. The generalized tracks comprise two vicariant track patterns (one northern and one mid-southern) across the Atlantic.
Main conclusions  The generalized tracks show clearly two separate marine biotas, which were associated with the proto-South Atlantic and the proto-North Atlantic oceans. These generalized tracks, as well as the two vicariant track clusters between the north and south Atlantic, are identified by vicariant relationships shared by most of the taxa analysed, and illustrate the final break up of the Gondwana and Laurasia supercontinents and the consequences of vicariant events for the biogeography of the Atlantic Ocean.     

First record of mating behaviour and induced parturition of the Brazilian endemic Lutz's stingray Hypanus berthalutzae

The recently described Lutz's stingray Hypanus berthalutzae is endemic to the Brazilian Province, including oceanic islands. Although it is expected to have life-history traits similar to the southern stingray H. americanus, little is known about its reproductive biology. Here we present the first observations of courtship behaviour (n = 4), copulation (n = 3) and an induced parturition of H. berthalutzae at the Fernando de Noronha Archipelago, an insular Marine Protected Area from the Equatorial Atlantic Ocean. The mating event records included (1) ‘chasing/close following’, (2) ‘biting/precopulatory biting’, (3) ‘insertion/copulation’ and (4) ‘separation’. These results are especially relevant considering that records of reproductive behaviour in the wild are rare for elasmobranchs in general. Mating events occurred in different months, suggesting that the reproductive cycle of H. berthalutzae in this insular system is asynchronous, as observed for other stingray species in regions with favourable environmental conditions and abundant food throughout the year. The opportunistic documentation of the induced parturition allowed for direct nonlethal observation of the two pups at or near full term in late May. Although preliminary, these observations should be considered in future management plans as they provide relevant data about the life-history traits and mating behaviour of this endemic and threatened species.     

Marine reserve recovery rates towards a baseline are slower for reef fish community life histories than biomass

Ecological baselines are disappearing and it is uncertain how marine reserves, here called fisheries closures, simulate pristine communities. We tested the influence of fisheries closure age, size and compliance on recovery of community biomass and life-history metrics towards a baseline. We used census data from 324 coral reefs, including 41 protected areas ranging between 1 and 45 years of age and 0.28 and 1430 km², and 36 sites in a remote baseline, the Chagos Archipelago. Fish community-level life histories changed towards larger and later maturing fauna with increasing closure age, size and compliance. In high compliance closures, community biomass levelled at approximately 20 years and 10 km² but was still only at approximately 30% of the baseline and community growth rates were projected to slowly decline for more than 100 years. In low compliance and young closures, biomass levelled at half the value and time as high compliance closures and life-history metrics were not predicted to reach the baseline. Biomass does not adequately reflect the long-time scales for full recovery of life-history characteristics, with implications for coral reef management.