The β-ligands

The 5-hydroxybenzimidazolylcobamide (B₁₂-HBI) derivatives from Methanosarcina barkeri were isolated. SO₃^2?, CN^?, H₂O, NH₃ and CH₃^? were identified as β-ligands. Two B₁₂-HBI compounds with unidentified β-ligands were found, of which one constituted a major part of the corrinoid content. 5′-Deoxyadenosyl was found as a β-ligand of a corrinoid without α-ligand. Biosynthesis of CH₃B₁₂HBI was observed in cell-free extracts and depended on methanol and ATP.     

Stimulation of CO2 reduction to methane by methylcoenzyme M in extracts Methanobacterium.

Addition of methyl-coenzyme M (CH₃SCH₂CH₂SO₃^?) to undialized, anaerobic, cell-extracts of $\text{Methanobacterium thermoautotrophicum}$ under an atmosphere of H₂ and CO₂ (80:20 v/v) stimulates 30-fold the rate of CO₂ reduction to methane. For each mol of CH₃SCH₂CH₂SO₃^? added 12 mol of methane is produced. This stimulation phenomenon requires magnesium ion, ATP, H₂, and CH₃SCH₂CH₂SO₃^?. Neither the reduced form of the cofactor, HSCH₂CH₂SO₃^?, nor the oxidized, disulfide form will replace the methylated coenzyme.     

Substrate Specificity of Methanogenic Communities from Lake Baikal Bottom Sediments Associated with Hydrocarbon Gas Discharge

Methane production by microbial communities from Lake Baikal bottom sediments with different chemical composition of pore water was studied. Methane production was more active in the media supplemented with H₂: CO₂ and H₂ + CH₃COONa, rather than on media with acetate as the sole source of carbon and energy. Addition of methanol stimulated methane production only in the case of microbial communities from upper silts. Ability of the communities to produce methane correlated reliably with the concentrations of the NO^3–, SO₄^2?, Cl^–, and CH₃COO^– ions in the pore water of the relevant sediments. Cultivation of communities from the mud volcano sediments resulted in development of methanogenic archaea of the family Methanocellaсеае in the media supplemented with H₂: CO₂ and H₂ + CH₃COONa, while methanogenic archaea in the communities cultivated without additional substrates belonged to the genera Methanoregula, Methanobacterium, and Methanosaeta.     

Microbial processes of the carbon and sulfur cycles in the Chukchi Sea

The research performed in August 2004 within the framework of the Russian-American Long-term Census of the Arctic (RUSALCA) resulted in the first data concerning the rates of the key microbial processes in the water column and bottom sediments of the Bering strait and the Chukchi Sea. The total bacterial counts in the water column varied from 30 × 10³ cells ml^?1 in the northern and eastern parts to 245 × 10³ cells ml^?1 in the southern part. The methane content in the water column of the Chukchi sea varied from 8 nmol CH₄l^?1 in the eastern part of the sea to 31 nmol CH₄l^?1 in the northern part of the Herald Canyon. Microbial activity occurred in the upper 0–3 cm of the bottom sediments; the methane formation rate varied from 0.25 to 16 nmol CH₄dm^?3 day^?1. The rates of methane oxidation varied from 1.61 to 14.7 nmol CH₄dm^?3 day^?1. The rates of sulfate reduction varied from 1.35 to 16.2 μmol SO ₄ ^2? dm^?1 day^?1. The rate of methane formation in the sediments increased with depth, while sulfate reduction rates decreased (less than 1 μmol SO ₄ ^2? dm^?3 day^?1). These high concentrations of biogenic elements and high rates of microbial processes in the upper sediment layers suggest a specific type of trophic chain in the Chukchi Sea. The approximate calculated balance of methane emission from the water column into the atmosphere is from 5.4 to 57.3 μmol CH₄m^?2 day^?1.     

Methane oxidation and methane driven redox process during sequential reduction of a flooded soil ecosystem

A laboratory incubation study conducted to assess the temporal variation of CH₄ oxidation during soil reduction processes in a flooded soil ecosystem. A classical sequence of microbial terminal electron accepting process observed following NO₃ ^? reduction, Fe³⁺ reduction, SO₄ ^2? reduction and CH₄ production in flooded soil incubated under initial aerobic and helium-flushed anaerobic conditions. CH₄ oxidation in the slurries was influenced by microbial redox process during slurry reduction. Under aerobic headspace condition, CH₄ oxidation rate (k) was stimulated by 29 % during 5 days (NO₃ ^? reduction) and 32 % during both 10 days (Fe³⁺) and 20 days (early SO₄ ^2? reduction) over unreduced slurry. CH₄ oxidation was inhibited at the later methanogenic period. Contrastingly, CH₄ oxidation activity in anaerobic incubated slurries was characterized with prolonged lag phase and lower CH₄ oxidation. Higher CH₄ oxidation rate in aerobically incubated flooded soil was related to high abundance of methanotrophs (r?=?0.994, p?<?0.01) and ammonium oxidizers population (r?=?0.184, p?<?0.05). Effect of electron donors NH₄ ⁺, Fe^2+, S^2? on CH₄ oxidation assayed to define the interaction between reduced inorganic species and methane oxidation. The electron donors stimulated CH₄ oxidation as well as increased the abundance of methanotrophic microbial population except S^2? which inhibited the methanotrophic activity by affecting methane oxidizing bacterial population. Our result confirmed the complex interaction between methane-oxidizing microbial groups and redox species during sequential reduction processes of a flooded soil ecosystem.     

Influence of sulfide compounds on the metabolism of Methanobacterium strain AZ

Various organic sulfides and inorganic sulfide were studied in respect to their effect on growth and methane production of Methanobacterium strain AZ. In mineral, sulfide-free medium, cysteine regulated the specific rate of methane production (optimum concentration =5·10^–4 mole/l). A supplement of sulfide (10^–4 mole/l) caused an additional stimulation. Coenzyme M^** or glutathione could be substituted for cysteine when sulfide was present. Growth was stimulated by CoM and glutathione to the same extent as with cysteine in sulfide-containing media. The concentration of sulfide in cysteine-containing media affected the excretion of amino acids.Abbreviations CoM Coenzyme M; HS–CH₂–CH₂–SO₃ (Taylor and Wolfe, 1974)     

Methane Metabolism in a Temperate Swamp

Comparisons between in situ CH₄ concentration and potential factors controlling its net production were made in a temperate swamp. Seasonal measurements of water table level and depth profiles of pH, dissolved CH₄, CO₂, O₂, SO₄^2-, NO₃^-, formate, acetate, propionate, and butyrate were made at two adjacent sites 1.5 to 2 m apart. Dissolved CH₄ was inversely correlated to O₂ and, in general, to NO₃^- and SO₄^2-, potential inhibitors of methanogenesis. At low water table levels (August 1992), maximal CH₄ (2 to 4 μM) occurred below 30 cm, whereas at high water table levels (October 1992) or under flooded conditions (May 1993), CH₄ maxima (4 to 55 μM) occurred in the top 10 to 20 cm. Higher CH₄ concentrations were likely supported by inputs of fresh organic matter from decaying leaf litter, as suggested by high acetate and propionate concentrations (25 to 100 μM) in one of the sites in fall and spring. Measurements of potential CH₄ production (and consumption) showed that the highest rates generally occurred in the top 10 cm of soil. Soil slurry incubations confirmed the importance of organic matter to CH₄ production but also showed that competition for substrates by nonmethanogenic microorganisms could greatly attenuate its effect.     

Metabolism of Acetate, Methanol, and Methylated Amines in Intertidal Sediments of Lowes Cove, Maine

The fates and the rates of metabolism of acetate, trimethylamine, methylamine, and methanol were examined to determine the significance of these compounds as in situ methane precursors in surface sediments of an intertidal zone in Maine. Concentrations of these potential methane precursors were generally <3 μM, with the exception of sediments containing fragments of the seaweed Ascophyllum nodosum, in which acetate was 96 μM. [2-¹⁴C]acetate turnover in all samples was rapid (turnover time <2 h), with ¹⁴CO₂ as the primary product. [¹⁴C]trimethylamine and methylamine turnover times were slower (>8 h) and were characterized by formation of both ¹⁴CH₄ and ¹⁴CO₂. Ratios of ¹⁴CH₄/¹⁴CO₂ from [¹⁴C]trimethylamine and methylamine in uninhibited sediments indicated that a significant fraction of these substrates were catabolized via a non-methanogenic process. Data from inhibition experiments involving sodium molybdate and 2-bromoethanesulfonic acid supported this interpretation. [¹⁴C]methanol was oxidized relatively slowly compared with the other substrates and was catabolized mainly to ¹⁴CO₂. Results from experiments with molybdate and 2-bromoethanesulfonic acid suggested that methanol was oxidized primarily through sulfate reduction. In Lowes Cove sediments, trimethylamine accounted for 35.1 to 61.1% of total methane production.     

Synthesis,structural characterization,and properties of the organothorium alkylthiolate complex [(CH3)5C5]2Th(SCH2CH2CH3)2

This contribution reports the synthesis and characterization of the organothorium alkylthiolate complex [(CH₃)₅C₅]₂Th(SCH₂CH₂CH₃)₂. This compound crystallizes in the monoclinic space group C2/c (#15) with four molecules in a cell of dimensions a=19.066(2), b=11.603(1), c=16.379(2) Å, and β=130.08(1)°. Least-squares refinement led to a value for the conventional R index (on F_o) of 0.040 for 132 variables and 2030 observations having F_o²⩾3σ(F_o²). The molecular structure consists of an unexceptional ‘bent sandwich’ [(CH₃)₅C₅]₂Th fragment coordinated to two n-propylthiolate ligands. The ThS bond distance is 2.718(3) Å; the SC(α) distance, 1.78(2) Å; the ThSC(α) angle, 108.3(5)°; and the SThS′ angle, 102.5(2)°. Contrasts are drawn with the structures of analogous actinide alkoxides     

Oligophosphine ligands. XIII. Halo and hydro complexes of ruthenium(II) containing the novel tripod tetrakis(tertiary) phosphine P(CH2CH2CH2PMe2)3

The reaction of the ruthenium complexes RuCl₂(PPh₃)₃, RuCl₂(PPh₃)₄, RuCl₂(PMe₃)₄, RuCl₂(Me₂SO)₄, or RuBr₂(PPh₃)₃ with the tripod tetrakis(tertiary) phosphine P(CH₂CH₂CH₂PMe₂)₃ gave the compounds cis-RuCl₂ [P(CH₂CH₂CH₂PMe₂)₃] (1) and cis-RuBr₂[P(CH₂CH₂CH₂PMe₂)₃] (2). The coordination geometry of 1 and 2 was derived from the ABX₂ type ³¹P NMR patterns of the complexes, as well as from an X-ray structure determination for the chloride 1. Crystals of 1 were found to be monoclinic, space group P2₁/n (Z = 4), with a = 942.0(3), b = 1446.2(4), c = 1680(1) pm, and β = 104.99(4)°. Anisotropic refinement of the structure converged at R = 0.040 and R_w = 0.034 (3318 data). Selected bond lengths are (in pm): RuP(CH₂−)Me₂ (trans-atom P), 235.8(1) and 239.3(1); RuP(CH₂−)Me₂ (trans-atom Cl), 227.9(1); RuP(CH₂−)₃, 225.3(1); RuCl (trans-group P(CH₂−)₃), 252.1(1); and RuCl (trans-group P(CH₂)Me₂), 250.5(1). Reaction of 1 with LiAlH₄ yielded the hydro derivatives cis-Ru(H)Cl[P(CH₂CH₂CH₂PMe₂)₃] (3) and cis-RuH₂[P(CH₂CH₂CH₂PMe₂)₃] (4), which were characterized by IR and ¹H and ³¹p NMR spectroscopy.     

Methane emissions from fen,bog and swamp peatlands in Quebec

A static chamber technique was used weekly from spring thaw to winter freezing to measure methane emissions from 10 sites representing subarctic fens and temperate swamps and bogs. Rates of < 200 mg CH₄ m^–2 d^–1 were recorded in subarctic fens: within-site emissions were primarily controlled by the evolution of the peat thermal regime, though significant releases during spring thaw were recorded at some sites. Between subarctic fens, topography and water table elevation were important controls on methane emissions, with the general sequence: pool = horizontal fen> string. Emission rates from the 2 swamp sites were lower (< 20 mg CH₄ m^–2 d^–1 ), except during the spring thaw and when the sites were saturated. The low water table ( < 80 cm depth) in abnormally dry years reduced emission rates; rates were also low from a swamp site which had been drained and cleared of vegetation for horticulture. Methane emission rates were also low (< 5 mg CH₄ m^–2 d^–1) from 2 ombrotrophic bog sites. Laboratory measurements of rates of methane production under anaerobic conditions and methane consumption under aerobic conditions revealed that production rates were generally highest in the surface layers (0 to 2.5 cm depth); production was high in the fens and very low in the bogs. The swamp samples were able to produce methane under anaerobic conditions, but were also able to consume methane under aerobic conditions. Annual methane emission rates are estimated to be 1 to 10 g CH₄ m^–2 from the fens, 1 to 4 g CH4 m^–2 from the swamps and <0.2 g CH₄ m^–2 from the bogs and drained swamp.     

Drainage-induced forest growth alters belowground carbon biogeochemistry in the Mer Bleue bog, Canada

Impacts of long-term drying and associated vegetation change on anaerobic decomposition, methane production, and pore water composition in peat bogs are poorly documented. To identify some of these impacts, we analyzed peat humification, pore water solutes, in situ and in vitro respiration rates, and Gibbs free energies of methanogenesis in a bog near a drainage ditch established in 1923. We compared drained peat under open bog vegetation and forest with a bog reference site. Drainage and tree growth induced an enrichment in carboxylic, aromatic, and phenolic moieties in the peat. Short-term in vitro respiration rates significantly decreased with humification (R ²?>?0.6, p?<?0.01). Dissolved inorganic carbon (DIC) and CH₄ concentrations also attained lower maxima in drained areas. However, near the water table in situ respiration intensified as indicated by steeper increases in DIC and CH₄ concentrations than at the reference site, especially under forest. Maximum in situ CO₂ production derived from inverse pore water modeling was 10.3?nmol?cm^?3?d^?1 (forest) and 6.3?nmol?cm^-3?d^-1 (bog) and was one to two orders of magnitude slower than in vitro anaerobic respiration. In the highly decomposed shallow peats under forest, methane production was suppressed and DOC concentration elevated. Raised H₂ concentrations (up to 200?nmol?l^?1) and in situ Gibbs free energies of down to ?60?kJ?mol^?1?(CH₄) suggested an inhibition of hydrogenotrophic methanogenesis by an unidentified factor at these sites. The study documents that several changes in biogeochemical process patterns do occur post-drainage, especially when tree growth is triggered. Most importantly, the establishment of forest on intensely humified peats can lower in situ methane production.     

Quantification of methane emissions from Chinese rice fields (Zhejiang Province) as influenced by fertilizer treatment

Methane emissions from rice paddies were quantified by using an automatic field system stationed in Zhejiang Province, one of the centres for rice cultivation in China. The data set showed pronouned interannual variations over 5 consecutive vegetation periods; by computing average values of all experimental plots the annual emissions were 177 g CH₄ m⁻² yr⁻¹ in 1987, 50 g CH₄ m⁻² yr⁻¹ in 1988, and 187 g CH₄ m⁻² yr⁻¹ in 1989. The field preparations encompassed 4 different treatments: (1) no fertilizers, (2) mineral fertilizer (KCl, K₂SO₄), (3) organic manure (rape seeed cake, animal manure), (4) mineral fertilizer plus organic manure. The methane emission rates of the different fertilizer treatments did not show significant differences. The mean emission rates, calculated over the entire observation period of 5 seasons, were 30.4 mg CH₄ m⁻² h⁻¹ (non-fertilized plot) and 28.3 mg CH₄ m⁻² h⁻¹ (mineral fertilizers). These values indicate a high level of methane production even without additional input of organic material into the rice-soils. In the other plots, the organic fertilizers were added once per vegetation period at app. 1 t fresh weight per ha, a relatively low application rate by agronomical standards. The mean emission rates were 35.1 mg CH₄ m⁻² h⁻¹ when manure was applied as sole fertilizer and 27.5 mg CH₄ m⁻² h⁻¹ when applied jointly with potassium fertilizers. Based on the results of this study we estimate a range of 18–28 Tg CH₄ yr⁻¹ as the total methane emission from Chinese rice fields. However, more field data from representative sites in China are needed to reduce the uncertainties in this estimate.     

Biomethanation of H2 and CO2 by Methanobacterium thermoautotrophicum in membrane and ceramic bioreactors

Direct conversion of gaseous H₂ and CO₂ to CH₄ was achieved with Methanobacterium thermoautotrophicum ΔH (DSM 1053) cells fixed either on a cellulose acetate membrane or inside a porous silica-alumina ceramic support.In a membrane bioreactor with cellulose acetate (5 μmø), methane production rate increased in proportion to the contact area between the gases and the methanogen cells, giving a methane production rate of 0.75 ml CH₄/cm² contact area/h. The initial fixed-cell mass of 0.2 mg dry cell/cm² of contact area increased to 1 mg/cm² after 12 h of cultivation (steady state).In the ceramic bioreactor (cylindrical, 30 mmø × 70; av. pore size 100 μ, and porosity 79.7%), the methane production rate at steady state was 6 l CH₄/l ceramic/l. The methanogen cells grew homogeneously inside the ceramic up to 7 cm depth, and the cell density ranged from 20 to 30 mg dry cell/cm³ ceramic.     

The crystal and molecular structures of dioxo mo(VI) complexes of tripodal,tetradentate N,S-donor ligands

The crystal and molecular structures of the complexes MoO₂((SCH₂CH₂)₂NCH₂CH₂SCH₃), I and MoO₂((SCH₂CH₂)₂NCH₂CH₂N(CH₃)₂), II, have been determined from X-ray intensity data collected by counter methods. Compound I crystallizes in two forms, Ia and Ib. In form Ia the space group is P2₁/n with cell parameters a = 7.235(2), b = 7.717(2), c = 24.527(6) Å, β = 119.86(2)°, V = 1188(1) ų, Z = 4. In form Ib the space group is P2₁/c with cell parameters a = 14.945(5), b = 11.925(5), c = 14.878(4) Å, β = 114.51(2)°, V = 2413(3) ų, Z = 8. The molecules of I in Ia and Ib are very similar having an octahedral structure with cis oxo groups, trans thiolates (cis to both oxo groups) and N and thioether sulfur atoms trans to oxo groups. Average ditances are MoO = 1.70, MoS (thiolate) = 2.40, MoN = 2.40 and MoS (thioether) = 2.79 Å. Molecule II crystallizes in space group P2₁2₁2₁ with a = 7.188(1), b = 22.708(8), c = 7.746(2) Å, V = 1246(1) ų and Z = 4. The coordination about Mo is octahedral with cis oxo groups, trans thiolates and N atoms trans to oxo. Distances in the first coordination sphere are MoO = 1.705(2), 1.699(2), MoS = 2.420(1), 2.409(1) and MoN = 2.372(2), 2.510(2) Å. The conformational features of the complexes are discussed. Complex I displays MoO and MoS distances which are very similar to those found by EXAFS in sulfite oxidase. This similarity is discussed.     

Substrates for Sulfate Reduction and Methane Production in Intertidal Sediments

The activity of and potential substrates for methane-producing bacteria and sulfate-reducing bacteria were examined in marsh, estuary, and beach intertidal sediments. Slow rates of methane production were detected in all sediments, although rates of sulfate reduction were 100- to 1,000-fold higher. After sulfate was depleted in sediments, the rates of methane production sharply increased. The addition of methylamine stimulated methanogenesis in the presence of sulfate, and [¹⁴C]methylamine was rapidly converted to ¹⁴CH₄ and ¹⁴CO₂ in freshly collected marsh sediment. Acetate, hydrogen, or methionine additions did not stimulate methanogenesis. [methyl-¹⁴C]methionine and [2-¹⁴C]acetate were converted to ¹⁴CO₂ and not to ¹⁴CH₄ in fresh sediment. No reduction of ¹⁴CO₂ to ¹⁴CH₄ occurred in fresh sediment. Molybdate, an inhibitor of sulfate reduction, inhibited [2-¹⁴C]acetate metabolism by 98.5%. Fluoracetate, an inhibitor of acetate metabolism, inhibited sulfate reduction by 61%. These results suggest that acetate is a major electron donor for sulfate reduction in marine sediments. In the presence of high concentrations of sulfate, methane may be derived from novel substrates such as methylamine.     

Coordination modes of polydentate ligands. 4. The crystal and molecular structure of an oxo-bridged iron(III) complex containing a pentadentate imino-alkoxy ligand

In the presence of Fe³⁺, template condensation of the fluorinated keto-alcohol CH₃C(O)CH₂C- (CF₃)₂OH with the triamine CH₃C(CH₂NH₂)₃ leads to two products: a fully condensed, imino-alkoxy, iron(III) complex, Fe{CH₃C[CH₂NC(CH₃)CH₂C(CF₃)₂O]₃}, and a partially condensed iron(III) complex, O{FeCH₃C[CH₂NC(CH₃)CH₂C(CF₃)₂O]₂(CH₂NH₂)}₂, in which two six-coordinate iron(III) centers are linked by an oxide ion. A complete crystal and molecular structure determination of the latter has been made.Crystals are monoclinic, space group C2/c, a= 13.886(4); b=23.206(5); c=15.241(4) Å; β= 106.55(2)°; V=4708 ų; Z=4. Least-squares refinement on F of 322 variables using 2627 observations converged at a conventional agreement factor of 3.8%. The Fe to bridging oxide distance is 1.811(1) Å, the FeFe distance 3.468 Å, and the FeOFe angle 146.6(2)°. A comparison is made between this structure and those of natural hemerythrin systems.     

Structural and vibrational characteristics of the tetrasulfatodimolybdenum ions with MoMo bond orders of 3.5 and 4.0

The compound K₄[Mo₂(SO₄)₄]Br·4H₂O has been made and its crystal structure determined. Space group P4/mnc; unit cell dimensions, a = 11.903(2), c = 8.021(1) Å, V = 1136(1) ų. The compound is isomorphous with the analogous chloride whose structure has been reported. The MoMo and MoBr distances are 2.169(2) and 2.926(1) Å, respectively and the [Mo₂(SO₄)₄] ³⁻ ions reside on crystallographic special positions with 4/m symmetry. The Raman spectra of both the bromo and chloro compounds have been measured and the MoMo stretching frequency is 370 ± 1.5 cm⁻¹ in each, for the compounds containing the natural isotopic distribution of molybdenum. The chloro compound has been prepared containing the pure isotope ⁹²Mo as well, and the Raman spectra recorded. The v(MoMo) band is shifted by 6.8 ± 0.5 cm⁻¹. The compound K₄[Mo₂(SO₄)₄]·2H₂O has also been prepared with Mo at natural abundance and with the pure isotope ¹⁰⁰Mo, whereby a shift of 8.5 ± 0.5 cm⁻¹ was found. These and other results will be discussed with regard to the similarity of the Raman spectra of the Mo₂(S0₄)₄³⁻ and M0₂(S0₄)₄⁴⁻ species.