Computations in the early visual cortex.

This paper reviews some of the recent neurophysiological studies that explore the variety of visual computations in the early visual cortex in relation to geometric inference, i.e. the inference of contours, surfaces and shapes. It attempts to draw connections between ideas from computational vision and findings from awake primate electrophysiology. In the classical feed-forward, modular view of visual processing, the early visual areas (LGN, V1 and V2) are modules that serve to extract local features, while higher extrastriate areas are responsible for shape inference and invariant object recognition. However, recent findings in primate early visual systems reveal that the computations in the early visual cortex are rather complex and dynamic, as well as interactive and plastic, subject to influence from global context, higher order perceptual inference, task requirement and behavioral experience. The evidence argues that the early visual cortex does not merely participate in the first stage of visual processing, but is involved in many levels of visual computation.     

Steam engine time: A review of ‘Ending Ageing’ by Aubrey de Grey

Aubrey de Grey has summarised his ideas on Strategies for Engineering Negligible Senescence - SENS - into his book Ending Ageing. He groups the molecular and cellular damage that result from ageing into seven categories, and describes what he believes are approaches to treating or reversing all of them. Some are relatively simple, some very radical, but, even if they are implemented imperfectly, de Grey believes that healthy lifespan would be extended significantly and some adults alive today would live healthily and productively to be 120 or beyond. At that point, further development of anti-ageing technology would extend their life further, and so on. The key is the practicality of technologies for addressing the basis of ageing today. The book is unashamedly a polemic and a plea for support for this grand vision, and its partisanship, first-person conversational style and occasionally immoderate comments may distract some readers from its message. This would be a shame. I think the vision unrealistic in its extreme version, but worth pursuing for its more modest aims, and the book worth reading for its bold ideas and its ability to stimulate the receptive mind to think about how its grand vision might be reduced to practice, to the benefit of us all. Above all, for readers of this Journal, it is an example of how carefully argued hypotheses can make you think and (I hope) act.     

The knowledge used in vision and where it comes from.

Knowledge is often thought to be something brought from outside to act upon the visual messages received from the eye in a ''top-down'' fashion, but this is a misleadingly narrow view. First, the visual system is a multilevel heterarchy with connections acting in all directions so it has no ''top''; and second, knowledge is provided through innately determined structure and by analysis of the redundancy in sensory messages themselves, as well as from outside. This paper gives evidence about mechanisms analysing sensory redundancy in biological vision. Automatic gain controls for luminance and contrast depend upon feedback from the input, and there are strong indications that the autocorrelation function, and other associations between input variables, affect the contrast sensitivity function and our subjective experience of the world. The associative structure of sensory message can provide much knowledge about the world we live in, and neural mechanisms that discount established associative structure in the input messages by recoding them can improve survival by making new structure more easily detectable. These mechanisms may be responsible for illusions, such as those produced by a concave face-mask, that are classically attributed to top-down influences.     

Vision in elasmobranchs and their relatives: 21st century advances

This review identifies a number of exciting new developments in the understanding of vision in cartilaginous fishes that have been made since the turn of the century. These include the results of studies on various aspects of the visual system including eye size, visual fields, eye design and the optical system, retinal topography and spatial resolving power, visual pigments, spectral sensitivity and the potential for colour vision. A number of these studies have covered a broad range of species, thereby providing valuable information on how the visual systems of these fishes are adapted to different environmental conditions. For example, oceanic and deep-sea sharks have the largest eyes amongst elasmobranchs and presumably rely more heavily on vision than coastal and benthic species, while interspecific variation in the ratio of rod and cone photoreceptors, the topographic distribution of the photoreceptors and retinal ganglion cells in the retina and the spatial resolving power of the eye all appear to be closely related to differences in habitat and lifestyle. Multiple, spectrally distinct cone photoreceptor visual pigments have been found in some batoid species, raising the possibility that at least some elasmobranchs are capable of seeing colour, and there is some evidence that multiple cone visual pigments may also be present in holocephalans. In contrast, sharks appear to have only one cone visual pigment. There is evidence that ontogenetic changes in the visual system, such as changes in the spectral transmission properties of the lens, lens shape, focal ratio, visual pigments and spatial resolving power, allow elasmobranchs to adapt to environmental changes imposed by habitat shifts and niche expansion. There are, however, many aspects of vision in these fishes that are not well understood, particularly in the holocephalans. Therefore, this review also serves to highlight and stimulate new research in areas that still require significant attention.     

Depth cues, behavioural context, and natural illumination: some potential limitations of video playback techniques

By expanding on issues raised by D’Eath (1998), I address in this article three aspects of vision that are difficult to reproduce in the video- and computer-generated images used in experiments, in which images of conspecifics or of predators are replayed to animals. The lack of depth cues derived from binocular stereopsis, from accommodation, and from motion parallax may be one of the reasons why animals do not respond to video displays in the same way as they do to real conspecifics or to predators. Part of the problem is the difficulty of reproducing the closed-loop nature of natural vision in video playback experiments. Every movement an animal makes has consequences for the pattern of stimulation on its retina and this ”optic flow” in turn carries information about both the animal’s own movement and about the three-dimensional structure of the environment. A further critical issue is the behavioural context that often determines what animals attend to but that may be difficult to induce or reproduce in an experimental setting. I illustrate this point by describing some visual behaviours in fiddler crabs, in which social and spatial context define which part of the visual field a crab attends to and which visual information is used to guide behaviour. I finally mention some aspects of natural illumination that may influence how animals perceive an object or a scene: shadows, specular reflections, and polarisation reflections. Received: 23 November 1999 / Received in revised form: 9 February 2000 / Accepted: 10 February 2000     

Can binocular rivalry reveal neural correlates of consciousness?

This essay critically examines the extent to which binocular rivalry can provide important clues about the neural correlates of conscious visual perception. Our ideas are presented within the framework of four questions about the use of rivalry for this purpose: (i) what constitutes an adequate comparison condition for gauging rivalry''s impact on awareness, (ii) how can one distinguish abolished awareness from inattention, (iii) when one obtains unequivocal evidence for a causal link between a fluctuating measure of neural activity and fluctuating perceptual states during rivalry, will it generalize to other stimulus conditions and perceptual phenomena and (iv) does such evidence necessarily indicate that this neural activity constitutes a neural correlate of consciousness? While arriving at sceptical answers to these four questions, the essay nonetheless offers some ideas about how a more nuanced utilization of binocular rivalry may still provide fundamental insights about neural dynamics, and glimpses of at least some of the ingredients comprising neural correlates of consciousness, including those involved in perceptual decision-making.     

Lessons (not) learned from mistakes about translation

Some popular ideas about translational regulation in eukaryotes have been recognized recently as mistakes. One example is the rejection of a long-standing idea about involvement of S6 kinase in translation of ribosomal proteins. Unfortunately, new proposals about how S6 kinase might regulate translation are based on evidence that is no better than the old. Recent findings have also forced rejection of some popular ideas about the function of sequences at the 3' end of viral mRNAs and rejection of some ideas about internal ribosome entry sequences (IRESs). One long-held belief was that tissue-specific translation via an IRES underlies the neurotropism of poliovirus and the attenuation of Sabin vaccine strains. Older experiments that appeared to support this belief and recent experiments that refute it are discussed. The hypothesis that dyskeratosis congenita is caused by a defect in IRES-mediated translation is probably another mistaken idea. The supporting evidence, such as it is, comes from a mouse model of the disease and is contradicted by studies carried out with cells from affected patients. The growing use of IRESs as tools to study other questions about translation is discussed and lamented. The inefficient function of IRESs (if they are IRESs) promotes misunderstandings. I explain again why it is not valid to invoke a special mechanism of initiation based on the finding that edeine (at very low concentrations) does not inhibit the translation of a putative IRES from cricket paralysis virus. I explain why new assays, devised to rule out splicing in tests with dicistronic vectors, are not valid and why experiments with IRESs are not a good way to investigate the mechanism whereby microRNAs inhibit translation.     

The processing of audio-visual speech: empirical and neural bases

In this selective review, I outline a number of ways in which seeing the talker affects auditory perception of speech, including, but not confined to, the McGurk effect. To date, studies suggest that all linguistic levels are susceptible to visual influence, and that two main modes of processing can be described: a complementary mode, whereby vision provides information more efficiently than hearing for some under-specified parts of the speech stream, and a correlated mode, whereby vision partially duplicates information about dynamic articulatory patterning.Cortical correlates of seen speech suggest that at the neurological as well as the perceptual level, auditory processing of speech is affected by vision, so that 'auditory speech regions' are activated by seen speech. The processing of natural speech, whether it is heard, seen or heard and seen, activates the perisylvian language regions (left>right). It is highly probable that activation occurs in a specific order. First, superior temporal, then inferior parietal and finally inferior frontal regions (left>right) are activated. There is some differentiation of the visual input stream to the core perisylvian language system, suggesting that complementary seen speech information makes special use of the visual ventral processing stream, while for correlated visual speech, the dorsal processing stream, which is sensitive to visual movement, may be relatively more involved.     

Teaching critical thinking in a developmental biology course at an American liberal arts college

We all expect our students to learn facts and concepts, but more importantly, we want them to learn how to evaluate new information from an educated and skeptical perspective; that is, we want them to become critical thinkers. For many of us who are scientists and teachers, critical thought is either intuitive or we learned it so long ago that it is not at all obvious how to pass on the skills to our students. Explicitly discussing the logic that underlies the experimental basis of developmental biology is an easy and very successful way to teach critical thinking skills. Here, I describe some simple changes to a lecture course that turn the practice of critical thinking into the centerpiece of the learning process. My starting point is the "Evidence and Antibodies" sidelight in Gilbert's Developmental Biology (2000), which I use as an introduction to the ideas of correlation, necessity and sufficiency, and to the kinds of experiments required to gather each type of evidence: observation ("show it"), loss of function ("block it") and gain of function ("move it"). Thereafter, every experiment can be understood quickly by the class and discussed intelligently with a common vocabulary. Both verbal and written reinforcement of these ideas dramatically improve the students' ability to evaluate new information. In particular, they are able to evaluate claims about cause and effect; they become experts at distinguishing between correlation and causation. Because the intellectual techniques are so powerful and the logic so satisfying, the students come to view the critical assessment of knowledge as a fun puzzle and the rigorous thinking behind formulating a question as an exciting challenge.     

How (and why) the visual control of action differs from visual perception

Vision not only provides us with detailed knowledge of the world beyond our bodies, but it also guides our actions with respect to objects and events in that world. The computations required for vision-for-perception are quite different from those required for vision-for-action. The former uses relational metrics and scene-based frames of reference while the latter uses absolute metrics and effector-based frames of reference. These competing demands on vision have shaped the organization of the visual pathways in the primate brain, particularly within the visual areas of the cerebral cortex. The ventral ‘perceptual’ stream, projecting from early visual areas to inferior temporal cortex, helps to construct the rich and detailed visual representations of the world that allow us to identify objects and events, attach meaning and significance to them and establish their causal relations. By contrast, the dorsal ‘action’ stream, projecting from early visual areas to the posterior parietal cortex, plays a critical role in the real-time control of action, transforming information about the location and disposition of goal objects into the coordinate frames of the effectors being used to perform the action. The idea of two visual systems in a single brain might seem initially counterintuitive. Our visual experience of the world is so compelling that it is hard to believe that some other quite independent visual signal—one that we are unaware of—is guiding our movements. But evidence from a broad range of studies from neuropsychology to neuroimaging has shown that the visual signals that give us our experience of objects and events in the world are not the same ones that control our actions.     

The visual ecology of fiddler crabs

With their eyes on long vertical stalks, their panoramic visual field and their pronounced equatorial acute zone for vertical resolving power, the visual system of fiddler crabs is exquisitely tuned to the geometry of vision in the flat world of inter-tidal mudflats. The crabs live as burrow-centred grazers in dense, mixed-sex, mixed-age and mixed-species colonies, with the active space of an individual rarely exceeding 1 m². The full behavioural repertoire of fiddler crabs can thus be monitored over extended periods of time on a moment to moment basis together with the visual information they have available to guide their actions. These attributes make the crabs superb subjects for analysing visual tasks and the design of visual processing mechanisms under natural conditions, a prerequisite for understanding the evolution of visual systems. In this review we show, on the one hand, how deeply embedded fiddler crab vision is in the behavioural and the physical ecology of these animals and, on the other hand, how their behavioural options are constrained by their perceptual limitations. Studying vision in fiddler crabs reminds us that vision has a topography, that it is context-dependent and pragmatic and that there are perceptual limits to what animals can know and therefore care about. For Mike Land     

Night,sight, and feeling safe: An exploration of aspects of Warlpiri and Western sleep

Sleeping leaves those asleep ‘blind’ and hence oblivious to potential or real danger. Such dangers are heightened further and more feared at night, the main time for sleep. In this article, I link ideas about sleep and nighttime social practices with questions about vision. My aim is to tease out some of the meanings implied in cross‐culturally distinct solutions to the protection of sleepers at night. I proceed by contrasting ethnographic data from the remote Aboriginal settlement of Yuendumu, Northern Territory, with select elements of the cultural history of Euro‐American sleep. Through ethnographic vignettes, I illuminate how people at Yuendumu commonly arrange themselves in yunta, or rows of sleepers, at night, and how some sleepers awake regularly during the night to ensure the others’ safety. I contrast this with Euro‐American ways of providing a sense of safety to the sleeper through practices of domestic fortification. My comparison revolves around the notion of sight, which in the Euro‐American West is clearly linked to ideas of knowledge, and at Yuendumu, as I demonstrate, imbued with a sense of care. I conclude by relating the gained insights to participant observation as anthropological method.     

Perceptual Anthropology: The Cultural Salience of Symmetry

In this paper, I advance the position that knowledge about the universals of form perceived by the visual system is fundamental to a theory of how art communicates. I focus on how the perceptual system uses the universal property of symmetry to recognize and classify form. I propose that the symmetries that structure design parts in non-representational geometric patterns metaphorically encode a culture's fundamental relationships about the world. This metaphorical use of the property of symmetry is illustrated by showing how bifold symmetries in ceramic design embody Puebloan concepts of life. [symmetry of pattern, perceptual universals, worldview in design structure, metaphorical readings]     

Metamorphosis of the amphibian eye

For many metamorphosing amphibians, the visual system must remain functional as the animal changes from an aquatic to a terrestrial habitat. Thyroid hormone, the trigger for metamorphosis, brings about changes at all levels of the animal, and profoundly alters the visual system, from cellular changes within the eye to new central connections subserving the binocular vision that develops during metamorphosis in some species. I will survey the alterations in the visual system in the metamorphosis of several Amphibian groups, and consider the role of thyroid hormone in bringing about these transformations through action at the molecular level.     

Synaesthesia: the sounds of moving patterns

A newly reported form of synaesthesia in which seeing visual motion induces auditory experiences challenges traditional ideas about the neural mechanisms of synaesthesia and may shed light on how the brain integrates information from sound and vision.     

夜行性昆虫微光视觉行为及其视觉适应机制

作为昆虫种群的重要组成部分,夜行性昆虫成功进化出了与其生存环境相适应的感觉机制,普遍认为夜行性昆虫主要依靠嗅觉和机械性感受等来探索环境,其视觉器官发生了退化或功能丧失。近年来,随着红外夜视、视网膜电位(electroretinogram, ERG)和视觉神经等生物新技术的应用,昆虫视觉生态学研究出现了突破性进展,自2002年以来陆续发现蛾类、蜜蜂和蜣螂等夜行性昆虫进化出了非凡的微光视觉(dim-light vision)能力,在夜晚(光照强度低于0.3 lx)依然可以如同在明亮的白天一样清晰、准确地感知目标物体特定的视觉特性,如明暗、颜色、形状、大小、对比度、偏振光和运动状态等,展现出视觉调控夜行性昆虫行为活动的巨大潜力。此外,这些夜行性昆虫复眼瞳孔、小眼焦距、视杆和色素颗粒等方面进化出了一些相应的形态生理特征,以提高光学灵敏度适应夜间微光环境。鉴于夜行性昆虫微光视觉行为及其视觉适应机制的研究尚处于起步阶段,仅见于少数访花昆虫或粪食性昆虫,建议加强以下几个方面的研究：(1)重大夜行性农业害虫的微光视觉及其应用的研究;(2)非典型重叠复眼的光学结构特征及其应对微光环境的适应机制研究;(3)夜行性昆虫响应微光环境的视觉适应机制研究;(4)基于夜行性昆虫微光视觉行为研发新型害虫防控技术。     

Unanswered questions in ecology

This is very much a personal view of what I think are some of the most important unanswered questions in ecology. That is, these are the questions that I expect will be high on the research agenda over the coming century. The list is organized hierarchically, beginning with questions at the level of individual populations, and progressing through interacting populations to entire communities or ecosystems. I will try to guess both at possible advances in basic knowledge and at potential applications. The only thing that is certain about this view of the future is that much of it will surely turn out to be wrong, and many of the most interesting future developments will be quite unforeseen.     

Unsupervised Learning of Cone Spectral Classes from Natural Images

The first step in the evolution of primate trichromatic color vision was the expression of a third cone class not present in ancestral mammals. This observation motivates a fundamental question about the evolution of any sensory system: how is it possible to detect and exploit the presence of a novel sensory class? We explore this question in the context of primate color vision. We present an unsupervised learning algorithm capable of both detecting the number of spectral cone classes in a retinal mosaic and learning the class of each cone using the inter-cone correlations obtained in response to natural image input. The algorithm''s ability to classify cones is in broad agreement with experimental evidence about functional color vision for a wide range of mosaic parameters, including those characterizing dichromacy, typical trichromacy, anomalous trichromacy, and possible tetrachromacy.