Evolution of pathogens in a man-made world.

Human activities have resulted in substantial, large-scale environmental modifications, especially in the past century. Ecologists and evolutionary biologists are increasingly coming to realize that parasites and pathogens, like free-living organisms, evolve as the consequence of these anthropogenic changes. Although this area now commands the attention of a variety of researchers, a broad predictive framework is lacking, mainly because the links between human activities, the environment and parasite evolution are complex. From empirical and theoretical examples chosen in the literature, we give an overview of the ways in which humans can directly or indirectly influence the evolution of different traits in parasites (e.g. specificity, virulence, polymorphism). We discuss the role of direct and indirect factors as diverse as habitat fragmentation, pollution, biodiversity loss, climate change, introduction of species, use of vaccines and antibiotics, ageing of the population, etc. We also present challenging questions for further research. Understanding the links between anthropogenic changes and parasite evolution needs to become a cornerstone of public health planning, economic development and conservation biology.     

固体介质中的重金属源解析及其在中国近海沉积物中的应用

沉积物中重金属源解析对甄别人为活动与自然变化对近海生态系统演化的影响有重要作用.本文总结了近年来污染物源解析常用的多元统计分析、地球化学方法和地质统计分析3种主要研究方法,剖析了不同方法的优劣及适用性,提出正定矩阵因子分析、Pb同位素示踪在重金属来源定量化研究中具有良好应用前景.梳理了中国近海沉积物中重金属来源的主要研究结果,发现河口和海湾是沉积物重金属受人为来源影响剧烈的典型近海区域,不同定量解析方法(多元统计分析、背景值估算、Pb同位素分析)均表明中国近海沉积物重金属的人为来源贡献率接近或超过50%.当前中国近海沉积物中重金属源解析研究还存在源识别端元模糊、解析结果缺乏相应的可靠性评价等问题.据此提出近海沉积物重金属源解析研究应使用多种解析技术手段综合、集成与优化,提高源解析的准确性;建立完善指标体系,筛选代表特定人为活动和自然过程的指标;甄别人为源重金属入海方式及过程,为沉积物数据信息的解译提供理论基础.     

A Missing Link: K-4 Biological Evolution Content Standards

The National Science Education Standards (NSES) is one of the most influential documents in US science education. The NSES has been utilized by local schools and districts, state departments of education, and national curriculum groups to form the backbone for curriculum frameworks, programs, and assessment systems to guide science education. The NSES provides national biological evolution content standards for fifth grade through high school but not for kindergarten through fourth grade. This article presents K-4 biological evolution content standards that can be used in conjunction with the current NSES K-4 life science and earth science content standards, brief examples of integration activities using the K-4 biological evolution content standards, and supplemental teacher information for the K-4 biological evolution content standards. The biological evolution content standards and the additional materials can guide teachers when teaching biological evolution to K-4th grade students.     

The significance of the sub-Antarctic Kerguelen Islands for the assessment of the vulnerability of native communities to climate change,alien insect invasions and plant viruses

The suite of environments and anthropogenic modifications of sub-Antarctic islands provide key opportunities to improve our understanding of the potential consequences of climate change and biological species invasions on terrestrial ecosystems. The profound impact of human introduced invasive species on indigenous biota, and the facilitation of establishment as a result of changing thermal conditions, has been well documented on the French sub-Antarctic Kerguelen Islands (South Indian Ocean). The present study provides an overview of the vulnerability of sub-Antarctic terrestrial communities with respect to two interacting factors, namely climate change and alien insects. We present datasets assimilated by our teams on the Kerguelen Islands since 1974, coupled with a review of the literature, to evaluate the mechanism and impact of biological invasions in this region. First, we consider recent climatic trends of the Antarctic region, and its potential influence on the establishment, distribution and abundance of alien insects, using as examples one fly and one beetle species. Second, we consider to what extent limited gene pools may restrict alien species’ colonisations. Finally, we consider the vulnerability of native communities to aliens using the examples of one beetle, one fly, and five aphid species taking into consideration their additional impact as plant virus vectors. We conclude that the evidence assimilated from the sub-Antarctic islands can be applied to more complex temperate continental systems as well as further developing international guidelines to minimise the impact of alien species.     

Anthropogenic indicators in pollen diagrams in eastern France: a critical review

The focus of palaeoenvironmental sciences on past human activities and their impact on the environment necessitates a precise understanding of the history and functioning of past and present anthropogenic ecosystems. A process is outlined which uses palaeoenvironmental and historical documentation as well as present-day observations of vegetational changes from two different plant communities, which are characterised by a very specific anthropogenic flora: arable weeds and ruderals. This study is coupled with modern pollen deposition data to deduce a set of pollen types characteristic of the range of human activities practised in eastern France, a region rich in pollen data. First, phytogeographical analysis of the evolution of these plant communities since the Neolithic enables the comparison to be validated. By distinguishing between native plants and aliens introduced long ago (archaeophytes), or more recently (neophytes), and by refining their ecological characteristics, the method also enables identification of species that are strong indicators of human activities. Next, local pollen deposition in these vegetation types is examined with a number of statistical analyses (PCIA, Davis indices), confirming the relationships between a given vegetation community, its theoretical pollen rain and its actual pollen rain, thus distinguishing local and regional pollen indicators. Lastly, comparison of the results obtained by these two approaches leads to a critical synthesis of the traditional anthropogenic pollen indicators (Behre’s “indicator species”) in the study area and to the establishment of more specific local pollen indicators.     

Evolution of language: attempt at synthesis

There are at least three traits that distinguish modern Homo sapiens from his closest relatives: bipedal locomotion, the unusual size of his brain and the ability to use symbolic language. To this day the emergence and evolution of these traits have not been explained sufficiently. New research in anthropology, linguistics, cognitive science and other disciplines shows, that the evolution of the human language faculty is a complex field that was influenced by a wide variety of factors. This paper tries to show the width of these factors and to work out the demands that are to be met by a theory of language evolution. After the introduction, in Section 2 the evolutionary principles and their role in the evolution of symbolic communication will be reviewed. Section 3 gives an overview of the results and controversies of brain evolution research, while Section 4 introduces our current knowledge of the neuronal basis of language. In Section 5 the controversies that had the greatest impact on the field and development of ways to solve them are reviewed before Section 6 summarizes the most important preadaptations for the evolving language faculty.     

An Alternative Approach: Teaching Evolution in a Natural History Museum Through the Topic of Vector-Borne Disease

Museums play a vitally important role in supporting both informal and formal education and are important venues for fostering public understanding of evolution. The Yale Peabody Museum has implemented significant education programs on evolution for many decades, mostly focused on the museum’s extensive collections that represent the past and present tree of life. Twelve years ago, the Peabody began a series of new programs that explored biodiversity and evolution as it relates to human health. Modern evolutionary theory contributes significantly to our understanding of health and disease, and medical topics provide many excellent and relevant examples to explore evolutionary concepts. The Peabody developed a program on vector-borne diseases, specifically Lyme disease and West Nile virus, which have become endemic in the United States. Both of these diseases have complex transmission cycles involving an intricate interplay among the pathogen, host, and vector, each of which is subject to differing evolutionary pressures. Using these stories, the museum explored evolutionary concepts of adaptation (e.g., the evolution of blood feeding), coevolution (e.g., the “arms race” between host and vector), and variation and selection (e.g., antibiotic resistance) among others. The project included a temporary exhibition and the development of curriculum materials for middle and high school teachers and students. The popularity of the exhibit and some formal evaluation of student participants suggested that this educational approach has significant potential to engage wide audiences in evolutionary issues. In addition it demonstrated how natural history museums can incorporate evolution into a broad array of programs.     

Reconstructing long‐term human impacts on plant communities: an ecological approach based on lake sediment DNA

Paleoenvironmental studies are essential to understand biodiversity changes over long timescales and to assess the relative importance of anthropogenic and environmental factors. Sedimentary ancient DNA (sedaDNA) is an emerging tool in the field of paleoecology and has proven to be a complementary approach to the use of pollen and macroremains for investigating past community changes. SedaDNA‐based reconstructions of ancient environments often rely on indicator taxa or expert knowledge, but quantitative ecological analyses might provide more objective information. Here, we analysed sedaDNA to investigate plant community trajectories in the catchment of a high‐elevation lake in the Alps over the last 6400 years. We combined data on past and present plant species assemblages along with sedimentological and geochemical records to assess the relative impact of human activities through pastoralism, and abiotic factors (temperature and soil evolution). Over the last 6400 years, we identified significant variation in plant communities, mostly related to soil evolution and pastoral activities. An abrupt vegetational change corresponding to the establishment of an agropastoral landscape was detected during the Late Holocene, approximately 4500 years ago, with the replacement of mountain forests and tall‐herb communities by heathlands and grazed lands. Our results highlight the importance of anthropogenic activities in mountain areas for the long‐term evolution of local plant assemblages. SedaDNA data, associated with other paleoenvironmental proxies and present plant assemblages, appear to be a relevant tool for reconstruction of plant cover history. Their integration, in conjunction with classical tools, offers interesting perspectives for a better understanding of long‐term ecosystem dynamics under the influence of human‐induced and environmental drivers.     

Rarity value and species extinction: the anthropogenic Allee effect

Standard economic theory predicts that exploitation alone is unlikely to result in species extinction because of the escalating costs of finding the last individuals of a declining species. We argue that the human predisposition to place exaggerated value on rarity fuels disproportionate exploitation of rare species, rendering them even rarer and thus more desirable, ultimately leading them into an extinction vortex. Here we present a simple mathematical model and various empirical examples to show how the value attributed to rarity in some human activities could precipitate the extinction of rare species—a concept that we term the anthropogenic Allee effect. The alarming finding that human perception of rarity can precipitate species extinction has serious implications for the conservation of species that are rare or that may become so, be they charismatic and emblematic or simply likely to become fashionable for certain activities.     

Geo-environmental impact assessment of Jinshazhou area in Guangzhou City

The geo-environmental impact of anthropogenic activities in Jinshazhou area is predicted by assessing the geo-environmental problems susceptibility under the condition of nature and anthropogenic activities in the study. An evaluation factor system including natural and anthropogenic factors is setup and the principal component analysis-fuzzy comprehensive evaluation model is selected. Results are shown in four grades, including very low, low, high, and very high. Under the natural condition, the very low, low, high, and very high susceptible regions of geo-environmental problems take up 67.73%, 0.71%, 7.30%, and 24.26%, respectively. Under the condition of anthropogenic activities, the very low, low, high, and very high susceptible regions of geo-environmental problems take up 69.18%, 5.88%, 5.88%, and 19.06%, respectively. Comparing the susceptibility of geo-environmental problems under two conditions, it can be predicted that there is a greatly negative impact of anthropogenic activities in the southern surrounding region of Jinshazhou tunnel; while in the north of the study area, such as Poly West Coast, anthropogenic activities have a positive impact on geo-environment. The present distribution of geo-environmental problems has shown that the new evaluation technique system can be successfully applied to predict the urban geo-environmental impact of anthropogenic activities.     

Evolution and medicine in undergraduate education: a prescription for all biology students

The interface between evolutionary biology and the biomedical sciences promises to advance understanding of the origins of genetic and infectious diseases in humans, potentially leading to improved medical diagnostics, therapies, and public health practices. The biomedical sciences also provide unparalleled examples for evolutionary biologists to explore. However, gaps persist between evolution and medicine, for historical reasons and because they are often perceived as having disparate goals. Evolutionary biologists have a role in building a bridge between the disciplines by presenting evolutionary biology in the context of human health and medical practice to undergraduates, including premedical and preprofessional students. We suggest that students will find medical examples of evolution engaging. By making the connections between evolution and medicine clear at the undergraduate level, the stage is set for future health providers and biomedical scientists to work productively in this synthetic area. Here, we frame key evolutionary concepts in terms of human health, so that biomedical examples may be more easily incorporated into evolution courses or more specialized courses on evolutionary medicine. Our goal is to aid in building the scientific foundation in evolutionary biology for all students, and to encourage evolutionary biologists to join in the integration of evolution and medicine.     

Impact of climatic changes and anthropogenic activities on ecosystem net primary productivity in India during 2001–2019

Climate change and anthropogenic activities have altered the terrestrial ecosystem dynamics around the globe. Due to the complex ecosystem-atmosphere interactions at different scales, these impacts are difficult to quantify and are poorly understood, especially in developing countries with limited ground-based observations. This study analyzed the impact of climatic changes and anthropogenic activities on ecosystem net primary productivity (NPP) in India using remote sensing-based observations, correlation analysis, and Residual Trend analysis (RESTREND). Using different climate variables such as precipitation, temperature, and solar radiation, along with Land Use and Land Cover (LULC) and NPP maps, we first classified the ecosystems (ES) into two categories: natural ecosystems – influenced only by climate change (ES_c), covering about 19.7% of the area, and human-influenced ecosystems – influenced by both climate change and anthropogenic activities (ES_c+a), covering about 80.3% of the area. RESTREND analysis was performed on both ES_c and ES_c+a to analyze the relative contributions of climate change and human activities to changes in NPP. The correlation analysis between NPP and climate variables suggested that precipitation was the dominant control of NPP in about 72% area, whereas temperature and solar radiation controlled NPP in Himalayan and forest-dominated regions, respectively. The human-influenced ecosystems (ES_c+a) experienced an increasing trend in NPP, whereas natural ecosystems (ES_c) experienced a decreasing trend, particularly in forest-dominated regions. Overall, NPP increased in the country during the study duration. The contributions of climatic changes and anthropogenic activities varied spatially and temporally. In general, climatic factors enhanced the NPP, whereas human activities contributed to a slight decline in NPP. These findings improve our understanding of how ecosystems in India are influenced by climate change and anthropogenic activities in recent decades. The results from this study will aid in identifying ecological hotspots and key drivers for better ecosystem management strategies.     

Widespread parallel population adaptation to climate variation across a radiation: implications for adaptation to climate change

Global warming will impact species in a number of ways, and it is important to know the extent to which natural populations can adapt to anthropogenic climate change by natural selection. Parallel microevolution within separate species can demonstrate natural selection, but several studies of homoplasy have not yet revealed examples of widespread parallel evolution in a generic radiation. Taking into account primary phylogeographic divisions, we investigate numerous quantitative traits (size, shape, scalation, colour pattern and hue) in anole radiations from the mountainous Lesser Antillean islands. Adaptation to climatic differences can lead to very pronounced differences between spatially close populations with all studied traits showing some evidence of parallel evolution. Traits from shape, scalation, pattern and hue (particularly the latter) show widespread evolutionary parallels within these species in response to altitudinal climate variation greater than extreme anthropogenic climate change predicted for 2080. This gives strong evidence of the ability to adapt to climate variation by natural selection throughout this radiation. As anoles can evolve very rapidly, it suggests anthropogenic climate change is likely to be less of a conservation threat than other factors, such as habitat loss and invasive species, in this, Lesser Antillean, biodiversity hot spot.     

Temporal dynamics of bird community composition: an analysis of baseline conditions from long-term data

Numerous anthropogenic activities threaten the biodiversity found on earth. Because all ecological communities constantly experience temporal turnover due to natural processes, it is important to distinguish between change due to anthropogenic impact and the underlying natural rate of change. In this study, we used data sets on breeding bird communities that covered at least 20 consecutive years, from a variety of terrestrial ecosystems, to address two main questions. (1) How fast does the composition of bird communities change over time, and can we identify a baseline of natural change that distinguishes primeval systems from systems experiencing varying degrees of human impact? (2) How do patterns of temporal variation in composition vary among bird communities in ecosystems with different anthropogenic impacts? Time lag analysis (TLA) showed a pattern of increasing rate of temporal compositional change from large-scale primeval systems to disturbed and protected systems to distinctly successional systems. TLA slopes of <0.04 were typical for breeding bird communities with natural turnover, while communities subjected to anthropogenic impact were characterised by TLA slopes of >0.04. Most of the temporal variability of breeding bird communities was explained by slow changes occurring over decades, regardless of the intensity of human impact. In most of the time series, medium- and short-wave periodicity was not detected, with the exception of breeding bird communities subjected to periodic pulses (e.g. caterpillar outbreaks causing food resource peaks).     

Huastec noncrop resource management: Implications for prehistoric rain forest management

The Huastec have interacted with elements of a diverse flora in northeastern Mexico for 30 centuries. A Huastec plant-management model is derived from patterns reflected in all anthropogenic vegetation zones, from the dooryard to the forest, and used to discuss the possible effects of human activities upon the prehistoric rain forest. Huastec plant management is discussed from an analytical perspective which views plant management as resulting from the integration of two types of plant manipulation: the manipulation of vegetation en masse and the manipulation of individual plants. Decisions about plant manipulation reflect a concern for minimal labor investment to place the resource at hand. Noncrop plant manipulation practices potentially influence the evolution of individual plants and plant communities primarily by affecting species' distribution and population parameters. Since the impact of plant-management practices clearly goes beyond domestication, ways of evaluating such practices in order to expand our understanding of ethnobotanical interactions and their impact are suggested.     

Evolution and Religion: Attitudes of Scottish Bioscience Students to the Teaching of Evolutionary Biology

In a questionnaire-based survey, the proportion of Glasgow University first year biology students who rejected evolution in 2009–2011 was about 7%, similar to the previously reported average figure for 1987–1999. However, by final year, evolution rejection was absent in students who studied evolution beyond first year and 4% among those who did not. Evolution rejection was closely related to accepting a religion-based alternative, whereas acceptance was related to finding the evidence convincing. Although many religious students accepted evolution, 50% of Islamic students were rejecters, compared to 25% of Christians. A question testing acceptance of several scientific propositions showed no evidence that evolution rejecters were generally more skeptical of science than accepters. Rejecters were overall less secure than accepters in their identification of the correct definition for terms related to evolution and creationism, but, surprisingly, more than 10% of final year students chose a Lamarckian definition for Darwinian evolution. Accepters and rejecters responded equally poorly to a question on Darwin’s history, but level 4 was much better. A breakdown of evolution into three components (human origins, macroevolution, and microevolution) found that some evolution rejecters accepted some components, with microevolution having the highest acceptance and human origins the lowest. These findings are discussed in terms of strategies for evolution education and the phenomenon of evolution rejection worldwide.     

Evolution of population genetic structure of the British roe deer by natural and anthropogenic processes (Capreolus capreolus)

Human influence typically impacts on natural populations of conservation interest. These interactions are varied and sometimes complex, and may be negative and unintended or associated with conservation and management strategy. Understanding the details of how these interactions influence and are influenced by natural evolutionary processes is essential to the development of effective conservation strategies. In this study, we investigate a species in Britain that has experienced both negative impact through overhunting in historical times and management efforts through culls and translocations. At the same time, there are regional populations that have been less affected by human influence. We use mtDNA and nuclear microsatellite DNA markers to investigate patterns of connectivity and diversity and find multiple insular populations in Britain that probably evolved within the Holocene (when the habitat was free of ice). We identify three concurrent processes. First, surviving indigenous populations show highly provincial patterns of philopatry, maintaining and generating population structure on a small geographic scale. Second, founder populations into habitat extirpated of native populations have expanded, but remained largely insular. Third, introductions into established populations generate some admixture. We discuss the implications for the evolution of diversity of the integration of natural processes with anthropogenic influences on population size and distribution.     

孢粉记录的重庆岩溶槽谷区700年来植被演替与喀斯特石漠化

在精确AMS¹⁴C测年的基础上,对采自重庆中梁山岩溶洼地的剖面样品进行了孢粉分析,并结合详细的历史文献资料,获取了该地区近700年以来的植被变迁与石漠化演化记录。结果显示：（1）1274-1553 cal a AD研究区周围主要分布以松属、柏科/杉科占优势的亚热带常绿针叶林,伴人植物花粉少量出现,人类活动相对较弱。（2）1553-1780 cal a AD,针叶树松属、柏科/杉科花粉含量下降,伴人植物花粉增多,指示研究区人类活动开始加强。（3）1780-1840 cal a AD,松属花粉含量急剧下降,灌木和伴人植物花粉急剧增加,指示该地区人类活动加剧,石漠化现象出现。（4）1840-2000 cal a AD,玉米花粉含量大幅度增加,表明人类活动更加强烈,石漠化现象进一步加剧。近700年来不断增加的人类活动是重庆地区植被退化、石漠化现象严重的重要因素。该研究结果对重庆岩溶地区的全面治理,恢复和重建自然生态环境具有重要的指示意义。     

A No-Holds-Barred Evolution Curriculum for Elementary and Junior High School Students

Understanding the basic mechanism of evolution by natural selection together with examples of how it works in nature is crucial for explaining and teaching the workings of biology and ecology to young students. Dobzhansky said it best in his advice to educators of biology: “Nothing in biology makes sense except in the light of evolution.” This premise is true at all levels of biology but especially so in the elementary years where foundations of science knowledge are laid. Elementary students are capable of learning cohesive and connected stories of biological principles and learning them within a no-holds-barred arena wherein concepts and processes usually reserved for high school years are taught with special care, appropriate exercises, and patient explanations. This story must include solid introductions to the fundamental principles of evolution by natural selection that are threaded within and alongside those of basic biology and ecology. This paper attempts to make the case for the inclusion of connected stories of biology in the earliest years of education and to include within that education the unifying theme of all biology and ecology studies—evolution.