The Cashew Frontier in Guinea-Bissau,West Africa: Changing Landscapes and Livelihoods

Guinea-Bissau farmers are replacing shifting cultivation with cashew (Anacardium occidentale) orchards in response to international and national economic and conservation policies, local social changes and perceived increasing climate instability. However, changes from relative food self-provisioning to full dependence on one cash crop and from a complex mosaic of agricultural fields, fallows and forest patches to a homogenous landscape of cashew agroforests impacts both the natural environment and livelihoods. This article on the demise of shifting cultivation in the tropics contributes to the growing body of scholarship on land use-cover change (LUCC) and its multiplex global, national and local drivers, varying across time and space. Further, we argue that instead of adopting an approach exclusively focused on parks, conservation-oriented external interventions should engage with farmers in the development of innovations that both preserve forest ecosystems and enhance food security.     

HIV-1 molecular epidemiology in Guinea-Bissau, West Africa: origin, demography and migrations

The HIV-1 epidemic in West Africa has been dominated by subtype A and the recombinant form CRF02_AG. Little is known about the origins and the evolutionary history of HIV-1 in this region. We employed Maximum likelihood and Bayesian methods in combination with temporal and spatial information to reconstruct the HIV-1 subtype distribution, demographic history and migration patterns over time in Guinea-Bissau, West Africa. We found that CRF02_AG and subsubtype A3 were the dominant forms of HIV-1 in Guinea-Bissau and that they were introduced into the country on at least six different occasions between 1976 and 1981. These estimates also corresponded well with the first reported HIV-1 cases in Guinea-Bissau. Migration analyses suggested that (1) the HIV-1 epidemic started in the capital Bissau and then dispersed into more rural areas, and (2) the epidemic in Guinea-Bissau was connected to both Cameroon and Mali. This is the first study that describes the HIV-1 molecular epidemiology in a West African country by combining the results of subtype distribution with analyses of epidemic origin and epidemiological linkage between locations. The multiple introductions of HIV-1 into Guinea-Bissau, during a short time-period of five years, coincided with and were likely influenced by the major immigration wave into the country that followed the end of the independence war (1963-1974).     

Patterns of Root Dynamics in Mangrove Forests Along Environmental Gradients in the Florida Coastal Everglades,USA

Patterns of mangrove vegetation in two distinct basins of Florida Coastal Everglades (FCE), Shark River estuary and Taylor River Slough, represent unique opportunities to test hypotheses that root dynamics respond to gradients of resources, regulators, and hydroperiod. We propose that soil total phosphorus (P) gradients in these two coastal basins of FCE cause specific patterns in belowground biomass allocation and net primary productivity that facilitate nutrient acquisition, but also minimize stress from regulators and hydroperiod in flooded soil conditions. Shark River basin has higher P and tidal hydrology with riverine mangroves, in contrast to scrub mangroves of Taylor basin with more permanent flooding and lower P across the coastal landscape. Belowground biomass (0–90 cm) of mangrove sites in Shark River and Taylor River basins ranged from 2317 to 4673 g m⁻², with the highest contribution (62–85%) of roots in the shallow root zone (0–45 cm) compared to the deeper root zone (45–90 cm). Total root productivity did not vary significantly among sites and ranged from 407 to 643 g m⁻² y⁻¹. Root production in the shallow root zone accounted for 57–78% of total production. Root turnover rates ranged from 0.04 to 0.60 y⁻¹ and consistently decreased as the root size class distribution increased from fine to coarse roots, indicating differences in root longevity. Fine root biomass was negatively correlated with soil P density and frequency of inundation, whereas fine root turnover decreased with increasing soil N:P ratios. Lower P availability in Taylor River basin relative to Shark River basin, along with higher regulator and hydroperiod stress, confirms our hypothesis that interactions of stress from resource limitation and long duration of hydroperiod account for higher fine root biomass along with lower fine root production and turnover. Because fine root production and organic matter accumulation are the primary processes controlling soil formation and accretion in scrub mangrove forests, root dynamics in the P-limited carbonate ecosystem of south Florida have a major controlling role as to how mangroves respond to future impacts of sea-level rise.     

Restoration of Biogeochemical Function in Mangrove Forests

Forest structure of mangrove restoration sites (6 and 14 years old) at two locations (Henderson Creek [HC] and Windstar [WS]) in southwest Florida differed from that of mixed‐basin forests (>50 years old) with which they were once contiguous. However, the younger site (HC) was typical of natural, developing forests, whereas the older site (WS) was less well developed with low structural complexity. More stressful physicochemical conditions resulting from incomplete tidal flushing (elevated salinity) and variable topography (waterlogging) apparently affected plant survival and growth at the WS restoration site. Lower leaf fall and root production rates at the WS restoration site, compared with that at HC were partly attributable to differences in hydroedaphic conditions and structural development. However, leaf and root inputs at each restoration site were not significantly different from that in reference forests within the same physiographic setting. Macrofaunal consumption of tethered leaves also did not differ with site history, but was dramatically higher at HC compared with WS, reflecting local variation in leaf litter processing rates, primarily by snails (Melampus coffeus). Degradation of leaves and roots in mesh bags was slow overall at restoration sites, however, particularly at WS where aerobic decomposition may have been more limited. These findings indicate that local or regional factors such as salinity regime act together with site history to control primary production and turnover rates of organic matter in restoration sites. Species differences in senescent leaf nitrogen content and degradation rates further suggest that restoration sites dominated by Laguncularia racemosa and Rhizophora mangle should exhibit slower recycling of nutrients compared with natural basin forests where Avicennia germinans is more abundant. Structural development and biogeochemical functioning of restored mangrove forests thus depend on a number of factors, but site‐specific as well as regional or local differences in hydrology and concomitant factors such as salinity and soil waterlogging will have a strong influence over the outcome of restoration projects.     

The genusDaphnia in Cameroon,West Africa

Three species of the genusDaphnia are recorded from Cameroon.Daphnia obtusa was found in a single lake out of 37 sampled.Daphnia laevis was found in the same lake asD. obtusa and in two other lakes, whileD. rosea was found in three other lakes. All the lakes were at altitudes over 1 000 m. The records can be interpreted either as altitudinal survivals of continually dispersing species, or as relicts in an area whereDaphnia is usually very rare or absent.     

Direct Detection by the Xpert MTB/RIF Assay and Characterization of Multi and Poly Drug-Resistant Tuberculosis in Guinea-Bissau,West Africa

BackgroundThis study aimed to evaluate the usefulness of the Xpert MTB/RIF assay for the rapid direct detection of M. tuberculosis complex (MTBC) strains and rifampicin resistance associated mutations in a resource-limited setting such as Guinea-Bissau and its implications in the management of tuberculosis (TB) and drug resistant tuberculosis, complementing the scarce information on resistance and genotypic diversity of MTBC strains in this West African country.ConclusionsThe Xpert MTB/RIF assay was reliable for the detection of rifampicin resistant MTBC strains directly from sputum samples of patients undergoing first-line treatment for two months, being more trustworthy than the simple presence of acid-fast bacilli in the smear. Its implementation is technically simple, does not require specialized laboratory infrastructures and is suitable for resource-limited settings when a regular source of electricity and maintenance is available as well as financial and operation sustainability is guaranteed by the health authorities. A high prevalence of MDR-TB among patients at risk of MDR-TB after two months of first-line treatment was found, in support of the WHO recommendations for its use in the management of this risk group.     

Soil Respiration and Belowground Carbon Allocation in Mangrove Forests

Mangrove forests cover large areas of tropical and subtropical coastlines. They provide a wide range of ecosystem services that includes carbon storage in above- and below ground biomass and in soils. Carbon dioxide (CO₂) emissions from soil, or soil respiration is important in the global carbon budget and is sensitive to increasing global temperature. To understand the magnitude of mangrove soil respiration and the influence of forest structure and temperature on the variation in mangrove soil respiration I assessed soil respiration at eleven mangrove sites, ranging from latitude 27°N to 37°S. Mangrove soil respiration was similar to those observed for terrestrial forest soils. Soil respiration was correlated with leaf area index (LAI) and aboveground net primary production (litterfall), which should aid scaling up to regional and global estimates of soil respiration. Using a carbon balance model, total belowground carbon allocation (TBCA) per unit litterfall was similar in tall mangrove forests as observed in terrestrial forests, but in scrub mangrove forests TBCA per unit litter fall was greater than in terrestrial forests, suggesting mangroves allocate a large proportion of their fixed carbon below ground under unfavorable environmental conditions. The response of soil respiration to soil temperature was not a linear function of temperature. At temperatures below 26°C Q10 of mangrove soil respiration was 2.6, similar to that reported for terrestrial forest soils. However in scrub forests soil respiration declined with increasing soil temperature, largely because of reduced canopy cover and enhanced activity of photosynthetic benthic microbial communities.     

Global Patterns of Pre-Dispersal Propagule Predation in Mangrove Forests1

Mangroves in disparate families produce viviparous seedlings (propagules) that are attacked by many crab and insect predators both before and after dispersal. While post-dispersal predation is viewed as an important factor in structuring many mangrove communities, pre-dispersal predation rates and agents have been characterized for few species. Ten species of mangrove and 3299 propagules were surveyed for pre-dispersal propagule predation at 42 sites around the world. Pre-dispersal predation rates were variable among sites and species, ranging from 0 to 93 percent within sands, with a global total predation rate of 23.3 percent (across all propagules examined) and a mean level of 28.3 percent across sites. Grapsid crabs, Coleoptera and Lepidoptera were the primary predators identified. Forests near human population centers and stands occurring at high intertidal sites exhibited higher levels of propagule predation than those in unpopulated or low-intertidal sites. Predation rates on a species were weakly, negatively correlated with conspecific seedling density at a site. To explore temporal variation in, and ramifications of pre-dispersal predation for propagule growth and abscission dynamics, Rhizophora mangle propagules were monitored over two years at three sites in Belize, Central America. Predation did not significantly reduce hypocotylar growth of germinated propagules on the parent tree, but nearly doubled the abscission rate of premature propagules. Pre-dispersal propagule predation is a ubiquitous feature of mangrove forests world-wide, and must be accounted for in estimates of reproductive output, stand health, and propagule availability for forestry and restoration efforts.     

Woody Debris in the Mangrove Forests of South Florida1

Woody debris is abundant in hurricane‐impacted forests. With a major hurricane affecting South Florida mangroves approximately every 20 yr, carbon storage and nutrient retention may be influenced greatly by woody debris dynamics. In addition, woody debris can influence seedling regeneration in mangrove swamps by trapping propagules and enhancing seedling growth potential. Here, we report on line‐intercept woody debris surveys conducted in mangrove wetlands of South Florida 9–10 yr after the passage of Hurricane Andrew. The total volume of woody debris for all sites combined was estimated at 67 m³/ha and varied from 13 to 181 m³/ha depending upon differences in forest height, proximity to the storm, and maximum estimated wind velocities. Large volumes of woody debris were found in the eyewall region of the hurricane, with a volume of 132 m³/ha and a projected woody debris biomass of approximately 36 t/ha. Approximately half of the woody debris biomass averaged across all sites was associated as small twigs and branches (fine woody debris), since coarse woody debris >7.5 cm felled during Hurricane Andrew was fairly well decomposed. Much of the small debris is likely to be associated with post‐hurricane forest dynamics. Hurricanes are responsible for large amounts of damage to mangrove ecosystems, and components of associated downed wood may provide a relative index of disturbance for mangrove forests. Here, we suggest that a fine:coarse woody debris ratio ≤0.5 is suggestive of a recent disturbance in mangrove wetlands, although additional research is needed to corroborate such findings.     

Hepatitis B and Delta Virus Are Prevalent but Often Subclinical Co-Infections among HIV Infected Patients in Guinea-Bissau,West Africa: A Cross-Sectional Study

BackgroundCo-infection with human immunodeficiency virus (HIV) and hepatitis B virus (HBV) may lead to accelerated hepatic disease progression with higher rates of liver cirrhosis and liver-related mortality compared with HBV mono-infection. Co or super-infection with hepatitis Delta virus (HDV) may worsen the liver disease and complicate treatment possibilities.MethodsIn this cross-sectional study we included HIV-infected individuals who had a routine blood analysis performed at an HIV clinic in Bissau, Guinea-Bissau between the 28^th of April and 30^th of September 2011. All patients were interviewed, had a clinical exam performed and had a blood sample stored. The patients'' samples were tested for HBV and HDV serology, and HBV/HDV viral loads were analyzed using in-house real-time PCR methods.ResultsIn total, 576 patients (417 HIV-1, 104 HIV-2 and 55 HIV-1/2) were included in this study. Ninety-four (16.3%) patients were HBsAg positive of whom 16 (17.0%) were HBeAg positive. In multivariable logistic regression analysis, CD4 cell count <200 cells/ µl and animist religion were significantly associated with HBsAg positivity. Due to scarcity of available plasma, virological analyses were not performed for eight patients. HBV DNA was detected in 42 of 86 samples (48.8%) positive for HBsAg and genotyping was performed in 26 patients; 25 of whom had genotype E and one genotype D. Among 9 patients on antiretroviral treatment (ART), one patient had the [L180M, M204V] mutation associated with lamivudine resistance. Among the HBsAg positive patients 25.0% were also positive for anti-HDV and 4/9 (44.4%) had detectable HDV RNA.ConclusionHBV and HDV were frequent co-infections among HIV positive patients in Guinea-Bissau and chronic infection was associated with severe immunosuppression. Lamivudine was widely used among HBsAg positive patients with the risk of developing resistant HBV.     

Environmental Effects of Canopy Gap Formation in High-Rainfall Mangrove Forests1

This study investigated the importance of gap formation in mangrove swamps on the island of Kosrae, Federated States of Micronesia, in order to understand better both natural processes of forest development and the effects of harvesting trees for firewood in these wetlands. Measurements were concentrated in seven plots located near four rivers: three in fringe zones and four in basin zones. Each plot was a cluster of five points and covered an area of ca 1.3 ha. From every point in each of the seven plots, the nearest canopy gap ≥10 m² was located; 25 of the 35 gaps were formed by harvesting. Porewater salinity was significantly higher under the canopy in fringe mangrove forests than in basin mangrove forests. Although gaps were small (mean gap size = 158 m²; median gap size = 92 m²), soil temperatures were significantly higher in gaps of both zones. Soil redox potential was significantly lower and porewater salinity significantly higher in the gaps than under the canopy in the basin zone only. Higher porewater salinity may be attributed to high evaporation rates from the soil and high transpiration rates from trees surrounding gaps. There were significantly more seedlings in gaps than under the canopy only in the fringe zones. Although gap formation alters the soil environment of Kosraean mangrove swamps, high freshwater input may buffer these effects in basin mangrove swamps by reducing porewater salinity. Current harvesting rates do not appear to be changing canopy species composition, but large gaps, especially in mangrove forests in more arid areas, may lead to major changes.     

Ranging,Activity and Habitat Use by Tigers in the Mangrove Forests of the Sundarban

The Sundarban of India and Bangladesh (about 6000 km²) are the only mangrove forests inhabited by a sizeable population of tigers. The adjoining area also supports one of the highest human densities and experiences severe human-tiger conflicts. We used GPS-Satellite and VHF radio-collars on 6 (3 males and 3 female) tigers to study their ranging patterns and habitat preference. The average home range (95% Fixed Kernel) for resident females was 56.4 (SE 5.69) and for males it was 110 (SE 49) km². Tigers crossed an average of 5 water channels > 30 meters per day with a mean width of 54 meters, whereas channels larger than 400 meters were rarely crossed. Tigers spent over 58% of their time within Phoenix habitat but compositional analysis showed a habitat preference of the order Avicennia-Sonneratia > Phoenix > Ceriops > Barren > Water. Average daily distance moved was 4.6 km (range 0.1–23). Activity of tigers peaked between 05:00 hours and 10:00 hours showing some overlap with human activity. Territory boundaries were demarcated by large channels which tigers intensively patrolled. Extra caution should be taken while fishing or honey collection during early morning in Avicennia-Sonneratia and Phoenix habitat types along wide channels to reduce human-tiger conflict. Considering home-range core areas as exclusive, tiger density was estimated at 4.6 (SE range 3.6 to 6.7) tigers/100 km² giving a total population of 76 (SE range 59–110) tigers in the Indian Sundarban. Reluctance of tigers to cross wide water channels combined with increasing commercial boat traffic and sea level rise due to climate change pose a real threat of fragmenting the Sundarban tiger population.     

Latitudinal Patterns of Herbivory in Mangrove Forests: Consequences of Nutrient Over-Enrichment

Ecosystems in the tropics are predicted to have stronger responses to nutrient enrichment, greater diversity, and more intense biotic interactions than in temperate areas. Mangrove forests, which occur across a broad biogeographic range from warm temperate to tropical, provide a unique opportunity to test these hypotheses by investigating the responses of herbivores to nutrient enrichment in temperate versus tropical latitudes. Mangroves are complex intertidal ecosystems with spatial differences in structure and diversity along tidal gradients and are threatened globally by human activities including nutrient over-enrichment. In this study, we used long-term fertilization experiments at the Indian River Lagoon, FL; Twin Cays, Belize; and Bocas del Toro, Panamá to determine how increased nutrients impact herbivore abundance and herbivory of Rhizophora mangle at the tree, forest, and regional scales. At these locations, which span approximately 2185 km and 18.4º of latitude, we fertilized individual trees with one of three treatments (Control, +N, +P) in two zones (fringe, scrub) along transects perpendicular to the shoreline and measured their responses for 4 years. Herbivory was measured as folivory, loss of yield, and tissue mining. Although nutrient enrichment altered plant growth, leaf traits, and nutrient dynamics, these variables had little effect on folivory at any location. Our results did not support the prediction that herbivory and per capita consumption are greatest at the most tropical location. Instead, folivory was highest at the most temperate location and lowest at the intermediate location. Folivory was generally higher in the fringe than in the scrub zone, but the pattern varied by location, herbivore, and nutrient treatment. Folivory by a dominant herbivore, Aratus pisonii, decreased from the highest to the lowest latitude. Our data suggest that factors controlling population dynamics of A. pisonii cascade to the mangrove canopy, linking herbivory to crab densities.     

The Herbivore Assemblage, Herbivory and Leaf Chemistry of the Mangrove Kandelia obovata in Two Contrasting Forests in Hong Kong

The herbivore assemblage, intensity of herbivory and factors determining herbivory levels on the mangrove Kandelia obovata (previously K. candel, Rhizophoraceae) were studied over a 13-month period at two forests with contrasting growing conditions in Hong Kong. Mai Po was part of an eutrophic embayment in the Pearl River estuary and generally offered more favourable conditions for mangrove growth, whereas Ting Kok had a rocky substratum and oceanic salinity. Twenty-four insect herbivore species were recorded on K. obovata, with lepidopteran larvae that consume leaf lamina being the dominant species. While leaf litter production was similar at the two forests, herbivory level at Mai Po (mean = 3.9% in terms of leaf area loss) was more severe than that at Ting Kok (mean = 2.3%). Peak herbivory levels were found in summer at both locations (6.5% for Mai Po and 3.8% for Ting Kok). Young leaves of K. obovata at both locations were generally preferred by the herbivores from the period of late spring to summer. Concentrations of most feeding deterrents (ash, crude fibre, and total soluble tannins) were significantly higher in both young and mature leaves at Ting Kok, whereas leaf nutrients (total nitrogen and water) were the same at the two sites. Young leaves at Ting Kok contained about 30% more tannins than their counterparts at Mai Po. Significant differences in leaf chemistry also existed between young and mature leaves at either site. The differences were concomitant with the observed patterns of leaf herbivory on K. obovata, and suggest a potential relationship between environmental quality and plant defence against herbivory.