A novel trade-off of insect diapause affecting a sequestered chemical defense

Diapause allows insects to temporally avoid conditions that are unfavorable for development and reproduction. However, diapause may incur a cost in the form of reduced metabolic energy reserves, reduced potential fecundity, and missed reproductive opportunities. This study investigated a hitherto ignored consequence of diapause: trade-offs involving sequestered chemical defense. We examined the aristolochic acid defenses of diapausing and non-diapausing pipevine swallowtail butterflies, Battus philenor. Pipevine swallowtail larvae acquire these chemical defenses from their host plants. Butterflies that emerge following pupal diapause have significantly less fat, a female fitness correlate, compared to those that do not diapause. However, butterflies emerging from diapaused pupae are more chemically defended compared to those that have not undergone diapause. Furthermore, non-diapausing butterflies are confronted with older, lower quality host plants on which to oviposit. Thus, a trade-off exists where butterflies may have greater energy reserves at the cost of less chemical defense and sub-optimal food resources for their larvae, or have substantially less energetic reserves with the benefit of greater chemical defense and plentiful larval food resources.     

The fast mandible strike in the trap-jaw ant Odontomachus

Ants of the ponerine genus Odontomachus employ a trap-jaw mechanism that allows them to instantaneously close their long, sturdy mandibles to catch prey or to defend themselves. Photoelectric scanning has revealed that these trap-jaws can be closed in less than 0.5 ms and that they decelerate before they collide with each other. The mandible strike is released in a reflexlike action when particular trigger hairs are touched. This reflex takes 4 to 10 ms and is probably the fastest reflex yet described for any animal. This speed is based on a catch mechanism in the mandible joint that keeps the extended mandibles open during contraction of the powerful closer muscle and allows the potential energy it produces to be stored within cuticular elements, apodemes, and the closer muscle itself. During a strike a relatively small specialized trigger muscle unlocks the catch, instantaneously releasing the stored energy to accelerate the mandible.     

A Biosemiotic Perspective of the Resource Criterion: Toward a General Theory of Resources

Describing resources and their relationships with organisms seems to be a useful approach to a ‘unified ecology’, contributing to fill the gap between natural and human oriented processes, and opening new perspectives in dealing with biological complexity. This Resource Criterion defines the main properties of resources, describes the mechanisms that link them to individual species, and gives a particular emphasis to the biosemiotic approach that allows resources to be identified inside a heterogeneous ecological medium adopting the eco-field model. In particular, this Criterion allows to couple matter, structured energy and information composing the ecological systems to the biosemiotic and cognitive mechanisms adopted by individual species to track resources, transforming neutral surroundings into meaningful species-specific Umwelten. The expansion of the human semiotic niche that is a relevant evolutionary process of the present time, assigns the role of powerful and efficient agency to the Resources Criterion to evaluate the effect of human intrusion into the natural systems with habits of key stone species, under the challenge of a growing use of alloctonous, immaterial and symbolic resources of the actual globalized societal models. The Resource Criterion interprets the ecological dynamics contributing to complete the epistemology of the ecology, to open a bridge toward economy and other societal sciences, and to contribute to formulate a General Theory of Resources.     

Refining the conditions for sympatric ecological speciation

Can speciation occur in a single population when different types of resources are available, in the absence of any geographical isolation, or any spatial or temporal variation in selection? The controversial topics of sympatric speciation and ecological speciation have already stimulated many theoretical studies, most of them agreeing on the fact that mechanisms generating disruptive selection, some level of assortment, and enough heterogeneity in the available resources, are critical for sympatric speciation to occur. Few studies, however, have combined the three factors and investigated their interactions. In this article, I analytically derive conditions for sympatric speciation in a general model where the distribution of resources can be uni‐ or bimodal, and where a parameter controls the range of resources that an individual can exploit. This approach bridges the gap between models of a unimodal continuum of resources and Levene‐type models with discrete resources. I then test these conditions against simulation results from a recently published article (Thibert‐Plante & Hendry, 2011, J. Evol. Biol. 24 : 2186–2196) and confirm that sympatric ecological speciation is favoured when (i) selection is disruptive (i.e. individuals with an intermediate trait are at a local fitness minimum), (ii) resources are differentiated enough and (iii) mating is assortative. I also discuss the role of mating preference functions and the need (or lack thereof) for bimodality in resource distributions for diversification.     

Neural and molecular dissection of a C. elegans sensory circuit that regulates fat and feeding

A major challenge in understanding energy balance is deciphering the neural and molecular circuits that govern behavioral, physiological, and metabolic responses of animals to fluctuating environmental conditions. The neurally expressed TGF-β ligand DAF-7 functions as a gauge of environmental conditions to modulate energy balance in C. elegans. We show that daf-7 signaling regulates fat metabolism and feeding behavior through a compact neural circuit that allows for integration of multiple inputs and the flexibility for differential regulation of outputs. In daf-7 mutants, perception of depleting food resources causes fat accumulation despite reduced feeding rate. This fat accumulation is mediated, in part, through neural metabotropic glutamate signaling and upregulation of peripheral endogenous biosynthetic pathways that direct energetic resources into fat reservoirs. Thus, neural perception of adverse environmental conditions can promote fat accumulation without a concomitant increase in feeding rate.     

Economics of comb wax salvage by the red dwarf honeybee, <Emphasis Type="Italic">Apis florea</Emphasis>

Colonies of Apis florea, which only abscond a short distance, usually return to salvage old nest wax; but, those colonies, and all other honeybee species which go considerably further, do not. Wax salvage would clearly be counter-productive unless the energy input/energy yield threshold was a profitable one. There are two possible trade-offs in this scenario, the trade-off between the energy expended to recover the wax (recovering hypothesis) as against that of replacing the wax by new secretion (replacing hypothesis). In order to compare the two hypotheses, the fuel costs involved in salvaging wax on one return trip, the average flower handling time, flight time and relative values for substituting the salvaged wax with nectar were calculated. Moreover, the energy value of the wax was determined. Net energy gains for salvaged wax were calculated. The energy value of the salvaged wax was 42.7 J/mg, thus too high to be the limiting factor since salvaging costs are only 642.76 mJ/mg (recovering hypothesis). The recovery costs (642.76 mJ/mg) only fall below the replacement costs for absconding distance below 115 m thus supporting the replacing hypothesis. This energetic trade-off between replacing and recycling plus the small absconding range of A. florea might explain why A. florea is probably the only honeybee species known to salvage wax and it parsimoniously explains the underlying reasons why A. florea only salvages wax from the old nest if the new nesting site is less than 100–200 m away—energetically, it pays off to recycle.     

Pollination niche overlap between a parasitic plant and its host

Niche theory predicts that species which share resources should evolve strategies to minimise competition for those resources, or the less competitive species would be extirpated. Some plant species are constrained to co-occur, for example parasitic plants and their hosts, and may overlap in their pollination niche if they flower at the same time and attract the same pollinators. Using field observations and experiments between 1996 and 2006, we tested a series of hypotheses regarding pollination niche overlap between a specialist parasitic plant Orobanche elatior (Orobanchaceae) and its host Centaurea scabiosa (Asteraceae). These species flower more or less at the same time, with some year-to-year variation. The host is pollinated by a diverse range of insects, which vary in their effectiveness, whilst the parasite is pollinated by a single species of bumblebee, Bombus pascuorum, which is also an effective pollinator of the host plant. The two species therefore have partially overlapping pollination niches. These niches are not finely subdivided by differential pollen placement, or by diurnal segregation of the niches. We therefore found no evidence of character displacement within the pollination niches of these species, possibly because pollinators are not a limiting resource for these plants. Direct observation of pollinator movements, coupled with experimental manipulations of host plant inflorescence density, showed that Bombus pascuorum only rarely moves between inflorescences of the host and the parasite and therefore the presence of one plant is unlikely to be facilitating pollination in the other. This is the first detailed examination of pollination niche overlap in a plant parasite system and we suggest avenues for future research in relation to pollination and other shared interactions between parasitic plants and their hosts.     

To share or not to share: clonal integration in a submerged macrophyte in response to light stress

The ability of clonal plant species to share resources has been studied in many experiments. The submerged macrophyte Potamogeton perfoliatus produces interconnected ramets within short time intervals and hence may or may not share resources with ramets growing in less favourable microhabitats. From a genet point of view, sharing with ramets growing under less favourable conditions might not be an optimal strategy when photosynthates could be used to establish other ramets growing under more favourable conditions. To analyse the plasticity in clonal integration of P. perfoliatus, we set up a factorial aquaria experiment with unshaded or shaded recipient ramets (offspring), which were connected to or separated from donor ramets (parents). Increased biomass production of offspring in parent–offspring systems compared with severed offspring in both light and shade showed that ramets share resources through clonal integration. The relative translocation to the first- and second-offspring generation was influenced by habitat quality: If first-offspring ramets grew in a shaded microhabitat, second-offspring ramets clearly profited. This may be at least partially because of the fact that resources are shifted from first-offspring to second-offspring ramets, indicating controlled senescence of the first-offspring. This complex sharing behaviour might be relevant when plants produce ramets within a dense patch of macrophytes, where support of a shaded ramet might not pay off.     

The sharing of water between society and ecosystems: from conflict to catchment-based co-management

Human uses of freshwater resources are increasing rapidly as the world population rises. As this happens, less water is left to support aquatic and associated ecosystems. To minimize future human water shortages and undesirable environmental impacts, more equitable sharing of water resources between society and nature is required. This will require physical quantities and social values to be placed on both human and aquatic ecosystem requirements. Current water valuation systems are dominated by economic values and this paper illustrates new quantification and valuation methods that take more account of human well-being and environmental impacts. The key to the effective implementation of these more equitable water allocation methods is the use of catchment-based integrated water resources management. This holistic framework makes it possible for human and ecosystem water requirements and the interactions between them to be better understood. This knowledge provides the foundation for incorporating relevant social factors so that water policies and laws can be developed to make best use of limited water resources. Catchment-based co-management can therefore help to ensure more effective sharing of water between people and nature.     

The backpropagation algorithm in J, a fast prototyping tool for researching neural networks

This paper illustrates the use of a powerful language, called J, that is ideal for simulating neural networks. The use of J is demonstrated by its application to a gradient descent method for training a multilayer perceptron. It is also shown how the back-propagation algorithm can be easily generalized to multilayer networks without any increase in complexity and that the algorithm can be completely expressed in an array notation which is directly executable through J. J is a general purpose language, which means that its user is given a flexibility not available in neural network simulators or in software packages such as MATLAB. Yet, because of its numerous operators, J allows a very succinct code to be used, leading to a tremendous decrease in development time.     

Low Contents of Carbon and Nitrogen in Highly Abundant Proteins: Evidence of Selection for the Economy of Atomic Composition

Proteins that assimilate particular elements were found to avoid using amino acids containing the element, which indicates that the metabolic constraints of amino acids may influence the evolution of proteins. We suspected that low contents of carbon, nitrogen, and sulfur may also be selected for economy in highly abundant proteins that consume large amounts of the resources of cells. By analyzing recently available proteomic data in Escherichia coli, Saccharomyces cerevisiae, and Schizosaccharomyces pombe, we found that at least the carbon and nitrogen contents in amino acid side chains are negatively correlated with protein abundance. An amino acid with a high number of carbon atoms in its side chain generally requires relatively more energy for its synthesis. Thus, it may be selected against in highly abundant proteins either because of economy in building blocks or because of economy in energy. Previous studies showed that highly abundant proteins preferentially use cheap (in terms of energy) amino acids. We found that the carbon content is still negatively correlated with protein abundance after controlling for the energetic cost of the amino acids. However, the negative correlation between protein abundance and energetic cost disappeared after controlling for carbon content. Building blocks seem to be more restricted than energy. It seems that the amino acid sequences of highly abundant proteins have to compromise between optimization for their biological functions and reducing the consumption of limiting resources. By contrast, the amino acid sequences of weakly expressed proteins are more likely to be optimized for their biological functions. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Western lowland gorillas (Gorilla gorilla gorilla) change their activity patterns in response to frugivory

The most important environmental factor explaining interspecies variation in ecology and sociality of the great apes is likely to be variation in resource availability. Relatively little is known about the activity patterns of western lowland gorillas (Gorilla gorilla gorilla), which inhabit a dramatically different environment from the well‐studied mountain gorillas (G. beringei beringei). This study aims to provide a detailed quantification of western lowland gorillas' activity budgets using direct observations on one habituated group in Bai Hokou, Central African Republic. We examined how activity patterns of both sexes are shaped by seasonal frugivory. Activity was recorded with 5‐min instantaneous sampling between December 2004 and December 2005. During the high‐frugivory period the gorillas spent less time feeding and more time traveling than during the low‐frugivory period. The silverback spent less time feeding but more time resting than both females and immatures, which likely results from a combination of social and physiological factors. When compared with mountain gorillas, western lowland gorillas spend more time feeding (67 vs. 55%) and traveling (12 vs. 6.5%), but less time resting (21 vs. 34%) and engaging in social/other activities (0.5 vs. 3.6%). This disparity in activity budgets of western lowland gorillas and mountain gorillas may be explained by the more frugivorous diet and the greater dispersion of food resources experienced by western lowland gorillas. Like other apes, western lowland gorillas change their activity patterns in response to changes in the diet. Am. J. Primatol. 71:91–100, 2009. © 2008 Wiley‐Liss, Inc.     

Protein-protein interaction in transport

The transport of histidine in the gram negative bacterium S. typhimurium has been studied over a number of years and found to occur through five transport systems (Ames, 1972). Of these, the one with the highest affinity has been studied in detail from the genetic, physiological and biochemical point of view. This system, known as the high-affinity histidine permease, is composed of two subsystems, the J-P and K-P systems, which have a component in common, the P protein, presumed to be membrane-bound. The J-P system, moreover, is known to require the presence of a periplasmic histidine-binding protein, the J protein. The J protein is coded for by the hisJ gene and the P protein is coded for by the hisP gene. Both of these genes have been mapped at 75 min on the Salmonella chromosomal map. Adjacent to them is a regulatory gene, the dhuA gene. The periplasmic histidine-binding protein J has been shown to interact directly with the second component of transport, the P protein (Ames and Spudich, 1976). In accordance with this, histidine-binding protein J has been shown to contain, besides the histidine-binding site, a second site, essential for function, the interaction site (Kustu and Ames, 1974). We have recently shown that a mutant J protein with a defective interaction site but an intact histidine-binding site cannot function in histidine transport, unless an appropriate compensating mutation is introduced in the P protein. The interaction between the J and P proteins is an obligatory step in transport. The mutation in the interaction site of the J protein has been shown to map in the hisJ gene, and the compensating supressor mutation in the P protein has been shown to map in the hisP gene. Our contention that the J and P proteins engage in a functional interaction assumes further strength from other studies on protein-protein interaction in bacteriophage development and in ribosomal structure. Among the possible functions of the J-P interaction in histidine transport, a likely one is the transmission of information to the P protein, concerning whether or not the histidine-binding site on the J protein is occupied. Appropriate conformational changes then can occur in either the J or the P protein, or both, such that the histidine is released in the correct location and direction on the inside of the cell. This could occur either by a pore-formation mechanism or by binding-site translocation. Another alternative is that the P protein is part of an energy transducing mechanism in which energy is transmitted to the J protein, through the interaction site, as a prerequisite for the J protein participation in translocation. Among the interesting findings coming out of this work, is also the fact that the P protein performs a central function in transport being involved in the permeation of other substrates besides histidine. It is likely that other binding proteins besides the J protein require the P protein. Thus an interesting question which we are trying to answer at present is whether the P protein has separate interaction sites for each of these other binding proteins requiring its function, or whether they all interact at one common site.     

Dynamic Behavior of DNA Replication Domains

Like many nuclear processes, DNA replication takes place in distinct domains that are scattered throughout the S-phase nucleus. Recently we have developed a fluorescent double-labeling procedure that allows us to visualize nascent DNA simultaneously with “newborn” DNA that had replicated earlier in the same nucleus during the same S-phase. Using this procedure we have shown that all DNA in a replication domain is replicated within 1 h (Manderset al.,1992,J. Cell Sci.103, 857–862). Here we extend these studies by analyzing the behavior of replication domains on a time scale of less than 1 h. We have carried out a series of double-labeling experiments in which we varied the time interval between nascent DNA and newborn DNA from 0 to 60 min. Subsequently, we determined from the confocal, 3D images the spatial position of replicated DNA domains and identified pairs of nearest neighbor domains containing newborn and nascent DNA, respectively. The distance between the centers of the two domains in a pair gradually increases. Accurate measurements show that domains containing nascent DNA and domains containing newborn DNA gradually separate from each other at a rate that is on the order of 0.5 μm/h. This indicates that either newly synthesized DNA moves away from sites of replication activity or the replication machinery is moving itself. This rate is essentially the same during early and late S-phase.     

Seascapes of fear: evaluating sublethal predator effects experienced and generated by marine mammals

The notion that predators can affect their prey without killing them is widely supported in the ecological literature yet rarely applied by marine mammal studies. We present three case studies in which patterns of time allocation by individual marine mammal foragers were used to index the sublethal effects of predators on bottlenose dolphins (Tursiops sp.), harbor seals (Phoca vitulina), and dugongs (Dugong dugon). In each case, foraging individuals optimized energy gain and safety from predators by spending less time in more profitable but dangerous patches or decreasing their use of risky feeding tactics that would increase net energy gain. By implication, marine mammals are subject to the non consumptive effects of their predators (i.e., to intimidation), and fear can mediate their impacts on their resources. We suggest, therefore, that future studies quantify patterns of time allocation to measure sublethal effects of predators on marine mammals, as well as the capacity of marine mammals to have sublethal effects on their own prey. We argue that such an approach is important because non consumptive effects may be of greater magnitude than lethal effects of predators, and information on sublethal effects of predators can inform conservation plans and studies of community structure.     

Masting uncoupling: mast seeding does not follow all mast flowering episodes in a dioecious juniper tree

Evolutionary selective forces, like predator satiation and pollination efficiency, are acknowledged to be major causes of masting (the variable, periodic and synchronic production of seeds in a population). However, a number of recent studies indicate that resources might also play an important role on shaping masting patterns. Dioecious masting species offer a privileged framework to study the role of resources on masting variation, since male and female plants often experience different reproductive costs and selective pressures. We followed masting and reproductive investment (RI) of the dioecious tree Juniperus thurifera in two populations along 10 years and studied the different response of males and females to experimentally increased water and nutrient availability in a third population. Juniperus thurifera females invested in reproduction three times more resources than males. Such disparity generated different resource‐use strategies in male and female trees. Tree‐ring growth and water use efficiency (WUE) confirmed that sexes differed in their resource investment temporal pattern, with males using current resources for reproduction and females using resources accumulated during longer periods. Watered and fertilized female trees presented significantly higher flowering reproductive investments than males and experienced an extraordinary mast‐flowering event. However, seeding RI and mast seeding were not affected by the treatment. This suggests that although resource availability affects the reproductive output of this species, there are other major forces regulating masting on J. thurifera. During 10 years, J. thurifera male and female trees presented high and low flowering years more or less synchronously. However, not all mast flowering episodes resulted in mast seeding, leading to masting uncoupling between flowering and seeding. Since flowering costs represent only 1% of females’ total reproductive investments, masting uncoupling could be a beneficial bet‐hedging strategy to maximize reproductive output in spite of unpredictable catastrophic events.     

The effects of essential oils and their major compounds on fish bacterial pathogens – a review

The increased resistance of fish pathogens to conventional treatments has lead researchers to investigate the antibacterial properties of natural resources, such as essential oils (EOs) of plants, in an effort to find products that are less harmful to the environment. The objective of this review is to provide an overview of the studies, in vivo and in vitro, that addressed the use of EOs and their major compounds as antimicrobial agents in fish, to identify the best EOs and compounds to investigate considering feasibility of application and suggest possible future studies. To date, studies suggest that the use of EOs in the prevention and/or treatment of infectious diseases in fish may be a promising strategy to reduce the use of conventional antibiotics in aquaculture, since several EOs effectively reduce or avoid the effects of bacterial infections in fish. The use of EOs through nanotechnology delivery systems, especially in dietary supplementation experiments, is promising. This form of application of the EOs allows a potentiation and targeting of the desired effect of the EOs and also allows the protection of EOs active constituents against enzymatic hydrolysis, deserving further study.     

A taphonomic approach to the genetic interpretation of clypeasteroid accumulations from the Miocene of Tarragona,NE Spain

Belaústegui, Z., Nebelsick, J.H., Gibert, J.M. de, Domènech, R. & Martinell, J. 2012: A taphonomic approach to the genetic interpretation of clypeasteroid accumulations from the Miocene of Tarragona, NE Spain. Lethaia, Vol. 45, pp. 548–565. Clypeasteroid accumulations are common in Cenozoic shallow marine sediments, particularly in the Neogene, as they are also in analogue modern environments. In this article, four clypeasteroid accumulations from Miocene (Serravallian) shallow marine carbonates of the El Camp de Tarragona Basin (NE Spain) are studied. Two of them are dominated by flat‐shaped Parascutella, whereas the other two consist exclusively of bell‐shaped Clypeaster. The combination of the taphonomic analysis of the tests, the palaeoecological and taphonomic information provided by the associated fossils, and the stratigraphical and sedimentological context of each one of these beds allows interpreting them as autochthonous/parautochthonous accumulations resulting from in situ reworking in moderate energy settings, except for one that constitutes a true sand dollar coquina deposited by a storm event. This contribution explores the potential of thorough taphonomic analysis of marine invertebrate skeletal concentrations and substantiates the importance of clypeasteroid echinoids as producers of shell beds in the Neogene. □ Clypeasteroids, Echinoids, Miocene, Taphonomy, Tarragona.     

Optimum body size: effects of food quality and temperature,when reproductive growth rate is restricted,with examples from aphids

Most models of optimum energy partitioning predict variability in adult size, although not always explicitly. Increase in size is usually attributed to an increase in the growth rate or decline in mortality. The model presented shows that this may not always be the case. Even when mortality is kept constant in organisms with overlapping generations, a constraint on the maximum reproductive growth rate may lead, when the rate of overall growth increases, to either an increase or a decline in the optimum adult body size. It is shown that adult size could be a consequence of the differential responses of life history traits to changes in temperature and food quality. This is clearly advantageous for short lived organisms, like aphids, each generation of which only experience a very small part of the great seasonal range in conditions. This hypothesis complements Iwasa's (1991) explanation of the phenotypic plasticity observed in long lived organisms. The predictions are illustrated with empirical data from aphids. The model presented, which has been verified against a very large data set, indicates that for aphids the adult weight observed at a particular combination of temperature and food quality is that at which the population growth rate, r_m, is maximized. We conclude that predictions about adult size from models based on the partitioning of energy are more likely to apply to organisms that scramble for resources, i.e., “r” selected species. The size of organisms that contest for resources is more likely to be determined by competitive status and avoidance of natural enemies.     

Reducing dissolved phosphorus loading to the Salton Sea with aluminum sulfate

Terrestrial support of aquatic food webs is becoming well established in the science of ecology. However, while terrestrial subsidies of energy have been shown to exert strong effects on aquatic food webs, it is less clear how variations in these subsidies, via natural or anthropogenic factors, will affect recipient ecosystems. To assess the influence of variations in terrestrial subsidies on an aquatic food web, we manipulated leaf-litter inputs in artificial ponds. Decreasing litter inputs did not affect any of the response variables in artificial ponds. This may be because the minimal amount of terrestrial carbon present combined with autochthonous production was enough to sustain the food web and/or the food web was altered in ways not detected by the experimental design. However, increasing leaf-litter inputs increased the percent survival and developmental rate of larval wood frogs (Rana sylvatica). Conversely, increasing litter input appeared to have no influence on zooplankton or salamander larvae. Increasing litter inputs also increased the dissolved organic carbon content and decreased the percent saturation of dissolved oxygen in artificial ponds. As system respiration in aquatic systems is frequently dominated by microbial respiration, we hypothesize that the effects of increasing litter input on wood frogs were the result of an increase food resources (i.e., microbes) for tadpoles. The lack of a response by salamander larvae and zooplankton may be due to the densities of zooplankton in tanks providing enough food for salamanders in all treatments, variation among specific zooplankton species in their ability to exploit these resources and transfer energy to salamanders, or omnivory among zooplankton offsetting the affects of leaf-litter inputs. Additional work is needed to determine the influence of litter inputs on zooplankton and salamanders in this community. These data demonstrate that variations in leaf-litter inputs can influence food web structure; however, the importance of these variations will likely be dependent upon the trophic position of various consumers. Handling editor: J. Cole