Holocene reef evolution in a macrotidal setting: Buccaneer Archipelago,Kimberley Bioregion,Northwest Australia

This study uses information derived from cores to describe the Holocene accretion history of coral reefs in the macrotidal (up to 11 m tidal range) Buccaneer Archipelago of the southern Kimberley coast, Western Australia. The internal architecture of all cored reefs is broadly similar, constituting well-preserved detrital coral fragments, predominantly branching Acropora, in a poorly sorted sandy mud matrix. However, once the reefs reach sea level, they diverge into two types: low intertidal reefs that maintain their detrital character and develop relatively narrow, horizontal or gently sloping reef flats at approximately mean low water spring, and high intertidal reefs that develop broad coralline algal-dominated reef flats at elevations between mean low water neap and mean high water neap. The high intertidal reefs develop where strong, ebb-dominated, tidal asymmetry retains seawater over the low tide and allows continued accretion. Both reef types are ultimately constrained by sea level but differ in elevation by 3–4 m.     

Dissolution of Dead Corals by Euendolithic Microorganisms Across the Northern Great Barrier Reef (Australia)

Spatial and temporal variabilities in species composition, abundance, distribution, and bioeroding activity of euendolithic microorganisms were investigated in experimental blocks of the massive coral Porites along an inshore–offshore transect across the northern Great Barrier Reef (Australia) over a 3-year period. Inshore reefs showed turbid and eutrophic waters, whereas the offshore reefs were characterized by oligotrophic waters. The euendolithic microorganisms and their ecological characteristics were studied using techniques of microscopy, petrographic sections, and image analysis. Results showed that euendolithic communities found in blocks of coral were mature. These communities were dominated by the chlorophyte Ostreobium quekettii, the cyanobacterium Plectonema terebrans, and fungi. O. quekettii was found to be the principal agent of microbioerosion, responsible for 70–90% of carbonate removal. In the offshore reefs, this oligophotic chlorophyte showed extensive systems of filaments that penetrated deep inside coral skeletons (up to 4.1 mm) eroding as much as 1 kg CaCO₃ eroded m⁻² year⁻¹. The percentage of colonization by euendolithic filaments at the surface of blocks did not vary significantly among sites, while their depths of penetration, especially that of O. quekettii (0.6–4.1 mm), increased significantly and gradually with the distance from the shore. Rates of microbioerosion (0.1–1.4 kg m⁻² after 1 year and 0.2–1.3 kg m⁻² after 3 years of exposure) showed a pattern similar to the one found for the depth of penetration of O. quekettii filaments. Accordingly, oligotrophic reefs had the highest rates of microbioerosion of up to 1.3 kg m⁻² year⁻¹, whereas the development of euendolithic communities in inshore reefs appeared to be limited by turbidity, high sedimentation rates, and low grazing pressure (rates <0.5 kg m⁻² after 3 years). Those results suggest that boring microorganisms, including O. quekettii, have a significant impact on the overall calcium carbonate budget of coral reef ecosystems, which varies according to environmental conditions.     

Seasonality of a Diverse Beetle Assemblage Inhabiting Lowland Tropical Rain Forest in Australia

One of the least understood aspects of insect diversity in tropical rain forests is the temporal structuring, or seasonality, of communities. We collected 29,986 beetles of 1473 species over a 4-yr period (45 monthly samples), with the aim to document the temporal dynamics of a trophically diverse beetle assemblage from lowland tropical rain forest at Cape Tribulation, Australia. Malaise and flight interception traps were used to sample adult beetles at five locations at both ground and canopy levels. Beetles were caught throughout the year, but individual species were patchy in their temporal distribution, with the 124 more abundant species on average being present only 56 percent of the time. Climatic variables (precipitation, temperature, and solar radiation) were poorly correlated with adult beetle abundance, possibly because: (1) seasonality of total beetle abundance was slight; (2) the peak activity period (September–November) did not correspond to any climatic maxima or minima; or (3) responses were nonlinear owing to the existence of thresholds or developmental time-lags. Our results do not concur with the majority of tropical insect seasonality studies suggesting a wet season peak of insect activity, perhaps because there is no uniform pattern of insect seasonally for the humid tropics. Herbivores showed low seasonality and individual species' peaks were less temporally aggregated compared to nonherbivores. Canopy-caught and larger beetles (> 5 mm) showed greater seasonality and peaked later in the year compared to smaller or ground-caught beetles. Thus seasonality of adult beetles varied according to the traits of feeding ecology, body size, and habitat strata.     

A new genus of phreatoicidean isopod (Crustacea) from the north Kimberley region, Western Australia

A new genus and species of phreatoicidean isopod, Crenisopus acinifer, has been collected from a freshwater spring in the northern Kimberley region of Western Australia. Empirical cladistic analysis of 10 exemplars of phreatoicidean genera found a single cladogram. The new genus and species assumed a basal position in the Phreatoicidea, placing it within the family Amphisopodidae sensu lata. This family, however, was not monophyletic in the preliminary cladogram, suggesting that the taxonomic structure of the suborder must be revised. The cladogram provided evidence for the monophyly of the Phreatoicidae and its New Zealand clade. The analysis suggested that clades of modern phreatoicideans diverged from one another during the Mesozoic Era after they entered fresh water, but prior to the fragmentation of East Gondwana.     

A modern soft-bottom, shallow-water crinoid fauna (Echinodermata) from the Great Barrier Reef, Australia

A recent preliminary survey revealed that 12 species of unstalked crinoids occur on a gentle sandy slope (12–18 m depth) at Lizard Island, Great Barrier Reef, Australia; five of which are also found on coral reefs. The other seven appear to constitute a unique assemblage restricted to unconsolidated substrates, where most cling to algae or hide beneath rubble or sponges. Members of this assemblage exhibit all of the basic feeding postures found among reef-dwelling species. However, Comatula rotalaria, which lacks anchoring cirri and bears uniquely differentiated short and long arms, exhibits a posture different from other living crinoids. Quantitative transects reveal apparent depth-related differences in species composition: C. rotalaria dominated the 12 transects in 12–13 m (84% of 82 specimens), while Comatella nigra, Comatula cf. purpurea, Amphimetra cf. tessellata and Zygometra microdiscus accounted for 96% of 54 specimens observed along 12 transects in 16–17 m.     

A new species of Halacarsantia Wolff, 1989 (Crustacea, Isopoda, Asellota, Santiidae) from Wistari Reef, southern Great Barrier Reef, Australia

Halacarsantia acutasp. n. is described from Wistari Reef, Capricorn Group, southern Great Barrier Reef, the first record of the genus from Australia. The new species differs from its congeners in having antenna flagellum composed of 8 articles; epipod apically acute, without setae, broad maxilliped endite and pereopod 1 basis with a short projection. A key to species of the genus is provided.     

Unusual Symbiotic Cyanobacteria Association in the Genetically Diverse Intertidal Marine Sponge Hymeniacidon perlevis (Demospongiae,Halichondrida)

Cyanobacteria represent one of the most common members of the sponge-associated bacterial community and are abundant symbionts of coral reef ecosystems. In this study we used Transmission Electron Microscopy (TEM) and molecular techniques (16S rRNA gene marker) to characterize the spatial distribution of cyanobionts in the widely dispersed marine intertidal sponge Hymeniacidon perlevis along the coast of Portugal (Atlantic Ocean). We described new sponge associated cyanobacterial morphotypes (Xenococcus-like) and we further observed Acaryochloris sp. as a sponge symbiont, previously only reported in association with ascidians. Besides these two unique cyanobacteria, H. perlevis predominantly harbored Synechococcus sp. and uncultured marine cyanobacteria. Our study supports the hypothesis that the community of sponge cyanobionts varies irrespective of the geographical location and is likely influenced by seasonal fluctuations. The observed multiple cyanobacterial association among sponges of the same host species over a large distance may be attributed to horizontal transfer of symbionts. This may explain the absence of a co-evolutionary pattern between the sponge host and its symbionts. Finally, in spite of the short geographic sampling distance covered, we observed an unexpected high intra-specific genetic diversity in H. perlevis using the mitochondrial genes ATP6 (π = 0.00177), COI (π = 0.00241) and intergenic spacer SP1 (π = 0.00277) relative to the levels of genetic variation of marine sponges elsewhere. Our study suggests that genotypic variation among the sponge host H. perlevis and the associated symbiotic cyanobacteria diversity may be larger than previously recognized.     

Species Composition of Corals in Silty Shallows of the Bai Thu Long Archipelago (Gulf of Tonkin,South China Sea)

Coral communities were investigated on 16 reefs in open and closed bays, in straits, and around capes of different islands of the Bai Thu Long Archipelago (Gulf of Tonkin, South China Sea). Variations observed in the communities of Acropora aspera + Goniopora columna, Goniopora stokesi + Galaxea fascicularis, Acropora aspera, Goniopora columna, and Pavona decussata + Pavona cactus are caused by different ecological conditions and may be linked with sedimentation flux within the water column and near the bottom, as well as with the rate of integral water exchange and resuspension above the coral settlements.     

Spatial Variation in Abundance,Size and Orientation of Juvenile Corals Related to the Biomass of Parrotfishes on the Great Barrier Reef,Australia

For species with complex life histories such as scleractinian corals, processes occurring early in life can greatly influence the number of individuals entering the adult population. A plethora of studies have examined settlement patterns of coral larvae, mostly on artificial substrata, and the composition of adult corals across multiple spatial and temporal scales. However, relatively few studies have examined the spatial distribution of small (≤50 mm diameter) sexually immature corals on natural reef substrata. We, therefore, quantified the variation in the abundance, composition and size of juvenile corals (≤50 mm diameter) among 27 sites, nine reefs, and three latitudes spanning over 1000 km on Australia’s Great Barrier Reef. Overall, 2801 juveniles were recorded with a mean density of 6.9 (±0.3 SE) ind.m⁻², with Acropora, Pocillopora, and Porites accounting for 84.1% of all juvenile corals surveyed. Size-class structure, orientation on the substrate and taxonomic composition of juvenile corals varied significantly among latitudinal sectors. The abundance of juvenile corals varied both within (6–13 ind.m⁻²) and among reefs (2.8–11.1 ind.m⁻²) but was fairly similar among latitudes (6.1–8.2 ind.m⁻²), despite marked latitudinal variation in larval supply and settlement rates previously found at this scale. Furthermore, the density of juvenile corals was negatively correlated with the biomass of scraping and excavating parrotfishes across all sites, revealing a potentially important role of parrotfishes in determining distribution patterns of juvenile corals on the Great Barrier Reef. While numerous studies have advocated the importance of parrotfishes for clearing space on the substrate to facilitate coral settlement, our results suggest that at high biomass they may have a detrimental effect on juvenile coral assemblages. There is, however, a clear need to directly quantify rates of mortality and growth of juvenile corals to understand the relative importance of these mechanisms in shaping juvenile, and consequently adult, coral assemblages.     

Heavy Metal Pollution in Reef Corals of Tuticorin Coast,Southeast Coast of India

This work investigates the metal pollution documented in the skeletons of selected coral species like Acropora formosa, Montipora digitata and Porites andrewsi from the Tuticorin Coast, one of the least studied areas in the Bay of Bengal. Relating heavy metal concentrations to morphological features of skeletons, highest concentrations of all the metals (except Cu and Zn) were found in ramose or branching types of corals. Irrespective of their growth characteristics or patterns, all these species displayed higher concentrations of Pb, Ni, Mn, and Cd within the skeletal part. The study area is currently exposed to a larger degree of metal pollution (natural and anthropogenic) than even before, as a result of the increasing environmental contamination from sewage discharges, the misuse of agricultural chemicals and fertilizers, and top soil erosion. The concentrations of heavy metals obtained in the present study are compared with values from earlier works around the world. This study indicates that corals are vulnerable to the accumulation of high concentrations of heavy metals in their skeletons and therefore can serve as proxies to monitor environmental pollution.     

Uptake of picophytoplankton,bacterioplankton and virioplankton by a fringing coral reef community (Ningaloo Reef,Australia)

We examined the importance of picoplankton and virioplankton to reef trophodynamics at Ningaloo Reef, (north-western Australia), in May and November 2008. Picophytoplankton (Prochlorococcus, Synechococcus and picoeukaryotes), bacterioplankton (inclusive of bacteria and Archaea), virioplankton and chlorophyll a (Chl a) were measured at five stations following the consistent wave-driven unidirectional mean flow path of seawater across the reef and into the lagoon. Prochlorococcus, Synechococcus, picoeukaryotes and bacterioplankton were depleted to similar levels (~40% on average) over the fore reef, reef crest and reef flat (=‘active reef’), with negligible uptake occurring over the sandy bottom lagoon. Depletion of virioplankton also occurred but to more variable levels. Highest uptake rates, m, of picoplankton occurred over the reef crest, while uptake coefficients, S (independent of cell concentration), were similarly scaled over the reef zones, indicating no preferential uptake of any one group. Collectively, picophytoplankton, bacterioplankton and virioplankton accounted for the uptake of 29 mmol C m⁻² day⁻¹, with Synechococcus contributing the highest proportion of the removed C. Picoplankton and virioplankton accounted for 1–5 mmol N m⁻² day⁻¹ of the removed N, with bacterioplankton estimated to be a highly rich source of N. Results indicate the importance of ocean–reef interactions and the dependence of certain reef organisms on picoplanktonic supply for reef-level biogeochemistry processes.     

Some nemerteans (Nemertea) from Queensland and the Great Barrier Reef, Australia

Three species of marine nemerteans described and illustrated from Queensland and the Great Barrier Reef, Australia, include one new genus and two new species: these are the monostiliferous hoplonemerteans Thallasionemertes leucocephala gen. et sp. nov. and Correanemertes polyophthalma sp. nov. A new colour variety of the heteronemertean Micrura callima is also reported, this species previously only being known from Rottnest Island, Western Australia. A key for the field identification of the marine nemerteans recorded from coastal Queensland and the Great Barrier Reef is provided.     

Composite Trace Fossil Assemblage in a Distal Carbonate Setting from the Tethys (Middle Jurassic,Betic Cordillera,Southern Spain)

Ichnological analysis of a Middle Jurassic carbonate surface from the Betic Cordillera (southern Spain) reveals a complex trace fossil assemblage, including softground Ophiomorpha, firmground Arenicolites, Thalassinoides and Gastrochaenolites, and hardground Trypanites as well as possible Gastrochaenolites. The ecological replacement in the macrobenthic community is interpreted according to successive suites that are controlled mainly by substrate consistency. Variations in composition and abundance of trace fossils between suites can be ecologically and/or taphonomically determined.     

Hemiuridae (Digenea) from marine fishes of the Great Barrier Reef,Queensland, Australia

The following species are described, figured and/or recorded from the Great Barrier Reef at Heron Island or Lizard Island, Queensland, with comparative material reported from other areas of the ocean around Australia or New Guinea: Dinurus longisinus (new synonym: D. hippuri) from Seriola lalandi, Heron Island and Coryphaena hippurus, Papua New Guinea; Ectenurus trachuri from Caranx sexfasciatus, Diploprion bifasciatus, Pterocaesio marri, Seriola lalandi and Atherinomorus capricorniensis, Heron Island; Erilepturus hamati (with 25 new synonyms) from Lutjanus carponotatus, Lizard Island, Platycephalus bassensis, Coff's Harbour, NSW, P. fuscus, Coff's Harbour, NSW and Moreton Bay, Queensland, P. endrachtensis, Sillago analis, S. maculata, S. ciliata, Pseudorhombus arsius and Polydactylus sp. from Moreton Bay, Queensland and Lates calcarifer, Darwin, Northern Territory; Tubulovesicula angusticauda from Echeneis naucrates and Lethrinus miniatus, Heron Island and Anguilla reinhardtii, Moreton Bay and Bribie Island, Queensland; Elytrophalloides humerus from Trachinotus botla and T. coppingeri, Heron Island; Lecithochirium kawakawa from Euthynnus affinis Heron Island and Lizard Island: Lecithochirium cirrhiti (new synonyms: L. sammarae, L. nohu) from Sargocentron rubrum, Heron Island; Lecithochirium caesionis from Pterocaesio marri, heron Island; Plerurus digitatus (new synonyms: P. cynoglossi, P. atulis, P. scomberomori) from Plectropomus leopardus, Heron Island, Lutjanus erythropterus, Variola louti, Scomberomorus semifasciatus, Grammatorcynus bicarinatus and Carangoides embureyi, C. gymnostethoides, Lizard Island, Scomberomorus commerson, Heron Island, Lizard Island, New Britain, Papua New Guinea, Point Lookout, Queensland and Moreton Bay, Queensland, Euthynnus affinis Heron Island, Lizard Island and New Britain, Papua New Guinea, Sphyraena barracuda, Heron Island and Lizard Island, Scomberomorus munroi, S. queenslandicus and Saurida undosquamis, Moreton Bay, Queensland and Chirocentrus dorab, Bundaberg, Queensland. The Lecithochirium species-group Cirrhiti is considered indistiguishable from the species-group Lotellae.     

Microbiological assessment of a disease outbreak on corals from Magnetic Island (Great Barrier Reef, Australia)

Unusual disease lesions were observed in Montipora corals on the fringing reef of Magnetic Island (Great Barrier Reef, Australia) following a period of high water temperature in early January 2002. Tissue death in Montipora spp. appeared as a black layer that spread rapidly across the colony surface, though this appeared as the final phase of disease progression (with three previous disease phases now identified, S. Anthony, unpublished). Culture and molecular-based microbial analysis of this layer did not identify a likely microbial pathogen. Despite this, DNA sequencing of microbial 16S rDNA indicated a shift in the bacterial population associated with affected coral tissue. A clone library of the healthy coral sample predominantly contained sequences within the -Proteobacteria. A disease coral sample representing the margin of the black lesion and healthy coral tissue was dominated by sequences, which demonstrated low sequence identity to a range of -Proteobacteria, -Proteobacteria and cyanobacteria. The microbes identified in the diseased Montipora spp. samples are likely to be opportunistic rather than the causative agent of the observed lesion. Studies are in progress to further characterise the ecology of this disease and describe the potential microbial pathogen(s).     

Sponge gardens of Ningaloo Reef (Carnarvon Shelf, Western Australia) are biodiversity hotspots

During a multi-agency Australian Government initiative sponges were sampled at three areas from Carnarvon Shelf, NW Australia. Sponges were identified to lowest possible level, largely as morphospecies (84%). A searchable and interactive taxonomic catalogue was created and is publicly accessible through the Ningaloo Atlas collated by the Australian Institute for Marine Science. The sponge gardens on Carnarvon Shelf are patchily distributed but highly diverse and occasionally extremely dense. We examined 754 specimens and distinguished 261 species belonging to 112 genera. Species accumulation curves indicate that this species number does not represent local sponge biodiversity, which is projected to reach up to 840 species with additional sampling. Many observed species appear to be new to science, 81% occurred only at one of the three areas, about 56% were singletons, and 76% had a wet weight of ≤500 g. Detailed spatial analyses were difficult due to sampling design, but general trends could be detected. The northern areas, where the Australian continental shelf is narrowest, favour sponges with a higher content of inorganic skeleton and growth forms able to withstand the strong tidal currents and exposure typical for this area. Sponges were most abundant at the shelf edge, where massive forms dominated. While the central and northern areas are protected by zoning regulations, the southern area had the highest species diversity, the largest individuals and the densest distributions, suggesting additional conservation measures may be required. Western Australia is clearly an important, but under-studied bioregion for sponges, and future research foci are proposed.     

Enhanced particle-feeding capacity of corals on turbid reefs (Great Barrier Reef, Australia)

Reef corals occur across a wide range of habitats, from offshore clear waters to nearshore sediment-laden environments. This study tests the hypothesis that corals from turbid nearshore areas have greater capacity to utilise suspended sediment as a food source than conspecifics from less turbid and midshelf areas. The hypothesis was tested on two common and widespread coral species on the Great Barrier Reef (Pocillopora damicornis and Acropora millepora). The particle clearance rates of samples from more turbid reefs were two-fourfold those of conspecifics from less turbid and midshelf reefs. Rates of sediment ingestion were generally a linear function of sediment load indicating no significant saturation within the concentration range of 1–30 mg dry weight l⁻¹. Estimated assimilation efficiency of particulate ¹⁴C varied between 50 and 80%, and was maximised for midshelf A. millepora at the lowest sediment concentration, suggesting that heterotrophy is more efficient in oligotrophic habitats. Based on feeding-response curves, assimilation efficiencies, and published records of ambient particle concentrations, representatives of these species on turbid inshore reefs are 10–20 times more heterotrophic on suspended sediment than their conspecifics on less turbid and midshelf reefs. Accepted: 7 September 1999