Mitogenomic sequences better resolve stock structure of southern Greater Caribbean green turtle rookeries

Analyses of mitochondrial control region polymorphisms have supported the presence of several demographically independent green turtle (Chelonia mydas) rookeries in the Greater Caribbean region. However, extensive sharing of common haplotypes based on 490-bp control region sequences confounds assessment of the scale of natal homing and population structure among regional rookeries. We screened the majority of the mitochondrial genomes of 20 green turtles carrying the common haplotype CM-A5 and representing the rookeries of Buck Island, St. Croix, United States Virgin Islands (USVI); Aves Island, Venezuela; Galibi, Suriname; and Tortuguero, Costa Rica. Five single-nucleotide polymorphisms (SNPs) were identified that subdivided CM-A5 among regions. Mitogenomic pairwise φ(ST) values of eastern Caribbean rookery comparisons were markedly lower than the respective pairwise F(ST) values. This discrepancy results from the presence of haplotypes representing two divergent lineages in each rookery, highlighting the importance of choosing the appropriate test statistic for addressing the study question. Haplotype frequency differentiation supports demographic independence of Aves Island and Suriname, emphasizing the need to recognize the smaller Aves rookery as a distinct management unit. Aves Island and Buck Island rookeries shared mitogenomic haplotypes; however, frequency divergence suggests that the Buck Island rookery is sufficiently demographically isolated to warrant management unit status for the USVI rookeries. Given that haplotype sharing among rookeries is common in marine turtles with cosmopolitan distributions, mitogenomic sequencing may enhance inferences of population structure and phylogeography, as well as improve the resolution of mixed stock analyses aimed at estimating natal origins of foraging turtles.     

Príncipe island hawksbills: Genetic isolation of an eastern Atlantic stock

The hawksbill turtle is a critically endangered species that has been extensively exploited for centuries. Príncipe Island off western Africa harbours one of the species' major nesting populations in the eastern Atlantic, as well as hosting year-round foraging aggregations of juveniles, subadults and adult males. To gain insight into the population's genetic structure and relationships with regional stocks, we analysed mitochondrial DNA (mtDNA) sequences of nesting females (N = 9), foraging adult females (N = 11), adult males (N = 32), subadults (N = 15) and juveniles (N = 80). The nesting population was found to be fixed for a single haplotype (EATL), which had been previously reported in both western and eastern Atlantic hawksbill foraging sites but had no known rookery source prior to this study. Thus it is now possible to confirm the westward transoceanic movement by hawksbills originating from Príncipe Island. Our analyses demonstrated that the Príncipe Island nesting colony is genetically distinct from breeding populations in the western Atlantic and is phylogenetically linked with Indo-Pacific hawksbill clades, suggesting that Príncipe Island was most likely colonised by migrants from the Indian Ocean via the Cape of Good Hope in southern Africa. Mixed stock analyses revealed that the eastern Atlantic appears to be the primary foraging area for Príncipe hawksbills (75%) while most of the foraging juveniles in Príncipe waters originate from the Príncipe rookery (84%). Furthermore, the presence of Caribbean haplotypes at low frequencies (< 5%) suggests that eastward transatlantic movements by juveniles to distant foraging and developmental habitats also take place. Depleted hawksbill populations in the eastern Atlantic combined with the low genetic variability and high genetic distinctiveness found in the Príncipe nesting and foraging aggregations with respect to the western Atlantic, underscore the high degree of isolation and vulnerability of this eastern Atlantic stock. These characteristics are highly relevant for the development of effective conservation programmes and highlight the urgent need to consolidate international cooperation across regional boundaries.     

Island-finding ability of marine turtles

Green turtles (Chelonia mydas) swim from foraging grounds along the Brazilian coast to Ascension Island to nest, over 2200 km distant in the middle of the equatorial Atlantic. To test the hypothesis that turtles use wind-borne cues to locate Ascension Island we found turtles that had just completed nesting and then moved three individuals 50 km northwest (downwind) of the island and three individuals 50 km southeast (upwind). Their subsequent movements were tracked by satellite. Turtles released downwind returned to Ascension Island within 1, 2 and 4 days, respectively. By contrast, those released upwind had far more difficulty in relocating Ascension Island, two eventually returning after 10 and 27 days and the third heading back to Brazil after failing to find its way back to the island. These findings strongly support the hypothesis that wind-borne cues are used by turtles to locate Ascension Island.     

Extensive Use of Intertidal Habitat by Shorebirds Outside Protected Nesting Areas

Conservation of shorebirds throughout their breeding and migratory ranges has become a priority as shorebird populations decline globally. Along the North Atlantic Coast, management efforts have particularly focused on preserving nesting habitat for piping plovers (Charadrius melodus), which are protected under the Endangered Species Act. It is unclear whether these conservation measures suffice to protect foraging habitat for piping plovers and other shorebirds on stopover during migration along the Atlantic Flyway. To evaluate the extent to which conservation of piping plover nesting areas extends to all habitats used by plovers, and to determine whether these protections also benefited non-breeding migratory shorebirds in the region, we conducted weekly shorebird surveys, recording the number and locations of piping plovers and other species, during northward and southward migration on Fire Island and Westhampton Island, New York, USA, from 2014–2016. We used canonical correspondence analysis (CCA) to assess the degree of spatiotemporal overlap between breeding plovers, foraging plovers, and other migratory shorebirds that temporarily stage at the site. The spatiotemporal distribution of migratory shorebirds matched more closely with piping plovers seen during foraging than piping plovers observed tending nests and engaging in other breeding activities. Migratory shorebirds and foraging piping plovers were more abundant and frequent in wet intertidal zones outside of fenced-off nesting areas, which were not protected under current management regimes. Therefore, additional protection of piping plover foraging habitat could benefit plovers and migratory shorebirds that use similar feeding grounds during stopover on northward and southward migration. © 2020 The Wildlife Society.     

Trypanosoma cruzi infection in Didelphis marsupialis in Santa Catarina and Arvoredo Islands, southern Brazil

Between 1984 and 1993 the prevalence of the Trypanosoma cruzi infection in opossums (Didelphis marsupialis) was studied in Santa Catarina and Arvoredo Islands, State of Santa Catarina, Brazil. The association of the triatomine bug Panstrongylus megistus with opossums nests and the infection rate of these triatomines by T. cruzi was also studied. Thirteen different locations were studied in Santa Catarina Island (SCI), in which 137 D. marsupialis were collected. Sixty two opossums were collected at the Arvoredo Island (AI), located 12 miles north from SCI. All captured animals were submitted to parasitological examinations that revealed the presence of T. cruzi in 21.9% of the opossums captured in SCI and 45.2% among opossums captured in the AI. The presence of P. megistus was detected in most of the D. marsupialis nests collected in the SCI, however, in the non-inhabited AI only eight triatomines were collected during the whole study. The presence of T. cruzi-infected D. marsupialis associated with P. megistus in human dwellings in the SCI, and the high infection rate of D. marsupilais by T. cruzi in the absence of a high vector density are discussed.     

Foraging activity of leaf‐cutting ants changes light availability and plant assemblage in Atlantic forest

1. Leaf‐cutting ants (LCAs) have often been denoted as ecosystem engineers because of their multifarious effects on the vegetation, particularly via nest‐driven environmental changes. However, the non‐trophic impacts of LCAs on forest dynamics via foliage harvesting across sizeable foraging zones (so‐called associated ecosystem engineering) are still poorly investigated. 2. Here, light availability and sapling assemblages were assessed within foraging areas and ant‐free control zones of 16 Atta cephalotes colonies located in a large remnant of Atlantic forest in northeastern Brazil. 3. Canopy openness and total light transmission were 1.4 and 1.6 times higher in foraging zones than in control areas. In parallel, sapling density and species richness decreased constantly from control to foraging zone plots. Additionally, shade‐tolerant species exhibited reduced abundance across foraging zones. A non‐metric multidimensional scaling ordination based on taxonomic similarity primarily segregated foraging zone and control plots; foraging zone plots converged to be more similar to each other as well. Finally, some plant species emerged as indicators of LCA‐free zones. 4. These results suggest that LCA foraging activity in the forest canopy directly increases the light availability and indirectly affects the recruitment and the structure of local plant assemblages. 5. Such a biologically significant effect on the light environment and its cascades confirms LCAs as potent ecosystem engineers, particularly as a plant assembly force, which operates beyond the spatial reach of their well‐described nest effects.     

Long-term trends in abundance of green sea turtles (Chelonia mydas) assessed by non-lethal capture rates in a coastal fishery

Sea turtle populations underwent severe decline in historical times, mainly through harvesting eggs and adults on nesting beaches. With the reduction of this threat in many areas, coupled with other conservation actions, some populations have demonstrated encouraging recovery, although remaining below their previous levels and undergone additional modern threats such as incidental capture in fisheries and pollution. Trends in sea turtle populations have usually been assessed through monitoring of females or nests on nesting beaches. Here we present data from a 22-year monitoring period for a juvenile green sea turtle Chelonia mydas mixed-stock in southeastern Brazil that were incidentally captured in passive non-lethal pound nets. A total of 3639 green turtles were captured in 5323 fishing days.pound⁻¹ with mortality rate of 2%. Captures occurred in all months, but bycatch rates, excluding recapture events, were higher in September and October, probably due to the recruitment of turtles migrating from southern areas, as well as recruits from the oceanic zone. Capture rates increased by 9.2% per year in the period from 1995 to 2016, in line with increasing source populations, particularly the main source contributor at Ascension Island, but also Trindade Island (Brazil) and Aves Island (Venezuela). Mean Curved Carapace Length of green turtles was higher during austral summer/early autumn and decreased markedly in May, probably due to the small-sized individuals that recruited to the study site. We show that the incidental capture of sea turtles in non-lethal fisheries, such as Brazilian pound nets, could also provide data on trends of populations nesting in distant places, and can contribute to the assessment of population status of sea turtles within Regional Management Units throughout the Atlantic Ocean.     

Foraging movements of Leach's storm‐petrels Oceanodroma leucorhoa during incubation

Knowledge of foraging movements during the breeding season is key to understanding energetic stresses faced by seabirds. Using archival light loggers (geolocators), a Bayesian state–space model, and stable isotope analysis, we compared foraging movements of Leach's storm‐petrels Oceanodroma leucorhoa during their incubation periods in 2012 and 2013. Data were collected from two colonies, Bon Portage Island and Country Island, which are 380 km apart along the coast of Nova Scotia, Canada. Based on allometry for procellariiform mass, predicted foraging ranges for Leach's storm‐petrels are 200 km; however, observed maximum distances from the colony were 3 to 5 times that. Storm‐petrels from Country Island travelled 1015 ± 238 km southeast to the Laurentian fan and south of the Grand Banks whereas storm‐petrels from Bon Portage Island travelled 613 ± 167 km southeast, beyond the continental slope, east of Georges Bank. The average distance travelled in a return trip was 2287 ± 603 km and 1303 ± 351 km for Country Island and Bon Portage Island, respectively. There were no differences between years in cumulative distances travelled within islands, but foraging trips did not last as long in 2013 (4.7 ± 1.5 d) as they did in 2012 (6.2 ± 2.1 d). Stable isotope analyses indicated that, during the incubation period, prey items from Country Island were from higher trophic levels and possibly had higher energy content than those from Bon Portage Island, perhaps explaining the more distant and longer foraging trips for Country Island birds.     

Photo-identification and satellite telemetry connect southern right whales from South Georgia Island (Islas Georgias del Sur) with multiple feeding and calving grounds in the southwest Atlantic

The sub-Antarctic waters of South Georgia Island (Islas Georgias del Sur, SG/IG) are a regularly visited feeding ground for southern right whales (Eubalaena australis, SRW) in the southwest Atlantic. Satellite telemetry and photo-identification records were compared to better understand the role of SG/IG in the SRW migratory network. We present the first insights from SRW satellite-tracked from the SG/IG feeding ground, habitat use patterns in the Scotia Arc, and movements to Antarctic habitats. Photo-identification comparisons to calving and feeding areas across the South Atlantic and a review of sightings of cetaceans reported from Bird Island (west of SG/IG) since 1979 illuminate long-term habitat use patterns in SG/IG. We present the first recorded migratory movement between SG/IG and multiple countries: Argentina, Uruguay, and Brazil. Photo-identification (1) linked SG/IG to a female SRW with a long-term sighting history in Brazil, and (2) provided the first match between SG/IG and the western Antarctic Peninsula, suggesting the latter could extend the feeding area for southwest Atlantic SRW. Satellite tracking and opportunistic sightings suggest that shelf and coastal waters west of SG/IG represent an important multi-season SRW feeding habitat and add to our overall understanding of habitats and ranges occupied by recovering southwest Atlantic SRW.     

Consequences of foraging trip duration on provisioning behaviour and fledging condition of common murres Uria aalgae

We examine the provisioning constraints of a pursuit‐diving seabird in a cold ocean regime by comparing the behaviour of common murres Uria aalge rearing chicks at two colonies in the Northwest Atlantic during 1998‐2000. Funk Island is the largest (340,000–400,000 breeding pairs) and most offshore (60 km) colony of common murres in eastern Canada. Seventy‐five percent of the Northwest Atlantic population of common murres breeds on this island. Great Island is one island within the Witless Bay Ecological Reserve, which is the second largest breeding aggregation (100 000 breeding pairs) and is located near‐shore (2 km). The primary forage fish species in Newfoundland waters is capelin Mallotus villosus, which spawns on or near coastal beaches during summer. Therefore, the two study colonies differ in their distance to food resources and colony size. It is within this natural context that we compare: (1) prey types and frequency of delivery (amount of prey), (2) parental time budgets, and (3) the mass and condition (mass/wing length) of fledglings at both colonies. Similarly sized female capelin (100–150 mm) were delivered to chicks at both colonies. Foraging time per day per parent, a proxy of foraging effort, was similar at both colonies (Great Island: 5.1 h; Funk Island: 5.5 h), as was the percentage of time spent with mates (Great Island: 12.3%; Funk Island: 10.9%). Foraging trips, however, were longer at Funk Island (4.1 h) than at Great Island (2.9 h). This resulted in lower feeding rates of chicks (0.17 feeds per h) and poorer condition of fledglings (2.9 g/mm) at Funk Island compared to those at Great Island (0.22 feeds per h; 3.9 g/mm). We hypothesize that provisioning efforts are constrained at Funk Island by (1) distant food resources and increased competitor density, resulting in longer foraging trip durations and (2) the time spent paired with mates at the colony, which may reflect a minimum time required to maintain breeding sites due to higher breeding densities at Funk Island compared to Great Island. Demographic consequences of this poor fledgling condition at Funk Island are unknown, but fledglings may sufficiently accelerate growth at sea due to their closer proximity to an important nursery area. If fledgling survival is compromised, however, the lower potential for growth at Funk Island will impact the entire Northwest Atlantic population of common murres.     

Green turtle (Chelonia mydas) genetic diversity at Paranaguá Estuarine Complex feeding grounds in Brazil

Sea turtles are marine reptiles that undertake long migrations through their life, with limited information regarding juvenile stages. Feeding grounds (FGs), where they spend most of their lives, are composed by individuals from different natal origins, known as mixed stock populations. The aim of this study was to assess genetic composition, natal origins and demographic history of juvenile green turtles (Chelonia mydas) at the Paranaguá Estuarine Complex (PEC), Brazil, considered a Natural World Heritage site. Tissue samples of stranded animals were collected (n = 60), and 700 bp mitochondrial DNA sequences were generated and compared to shorter sequences from previously published studies. Global exact tests of differentiation revealed significant differences among PEC and the other FGs, except those at the South Atlantic Ocean. Green turtles at PEC present genetic signatures similar to those of nesting females from Ascension Island, Guinea Bissau and Aves Island/Surinam. Population expansion was evidenced to have occurred 20–25 kYA, reinforcing the hypothesis of recovery from Southern Atlantic refugia after the last Glacial Maximum. These results contribute to a better understanding of the dynamics of green turtle populations at a protected area by providing knowledge on the dispersion patterns and reinforcing the importance of the interconnectivity between nesting and foraging populations.     

Variation in spatial distribution of juvenile loggerhead turtles in the eastern Atlantic and western Mediterranean Sea

Loggerhead sea turtles (Caretta caretta) originating from the Western Atlantic carry out one of the largest marine migrations, reaching the eastern Atlantic and Mediterranean Sea. It has been proposed that this transatlantic journey is simply a consequence of drifting, with the lack of a target destination and a passive dispersal with oceanic currents. This predicts that the size of the source populations and geographic distance to the feeding grounds should play important roles in defining stock composition in the eastern Atlantic and Mediterranean Sea. Under this scenario, near pelagic stocks would have no genetic structure, and would be composed of similar cohorts from regional rookeries. To address this question, we sampled individuals from one important eastern Atlantic feeding ground, the Canary Islands, and sequenced a fragment of the mitochondrial DNA control region. We compared the composition of this feeding stock with published data of other proximal areas: Madeira, Azores and Andalusia. “Rookery-centric” mixed stock analysis showed that the distribution of loggerhead sea turtles along the eastern Atlantic feeding grounds was in latitudinal accordance to their natal origin: loggerhead turtles from Florida were significantly more abundant in Azores (30%) than in Canary Islands (13%), while those from Mexico had a poor representation in Azores (13%) but were more prevalent in Canary Islands (34%). Also, genetic stability in temporal and size analyses of the Canary Island aggregation was found, showing a long period of residency. These results indicate a non-random distribution of loggerhead juveniles in oceanic foraging grounds. We discuss possible explanations to this latitudinal variation.     

Competition, mortality and diversity in South Atlantic coastal boulder communities

Boulder shores are common at all latitudes and dominate the intertidal and subtidal zones of sub-Antarctic coastlines. The encrusting benthos of boulders was examined on similar shore types at four locations: Tierra del Fuego, East Falkland, West Falkland and Bird Island (off South Georgia). Bird Island is unusual in experiencing high trampling and organic enrichment from fur seals. The results were compared to a Patagonian site and a non-trampled South Georgia site (Husvik) and other sites taken from the literature. Principal Component Analysis revealed South Atlantic/Southern Ocean encrusting faunas formed a distinct cluster when compared to assemblages from elsewhere at similar latitudes. Bray Curtis cluster analysis of the South Atlantic-Southern Ocean sites showed the major division was between Southern Ocean and South Atlantic Ocean sites, beyond which there were three distinct clusters centred around Patagonia (Magellanic), the Falklands and Southern Ocean sites. The organisation of competitive interactions between species was mostly determinate and transitive (essentially hierarchical). The transitivity index scores were higher than most similar assemblages studied to date. The diversity of encrusting assemblages ranged from Shannon Weaver H values of 2.38–0.77 (East Falkland and Bird Island, respectively) in the intertidal to 1.27–0.73 (Patagonia and South Georgia, respectively) in the subtidal zone. Annual mortality (of bryozoan colonies) varied from 85–97% in the intertidal to 65–92% in the subtidal, being higher in the Southern Ocean than South Atlantic sites, largely due to ice scour and wave action. The Bird Island mortality values may be high even for a Southern Ocean site. Accepted: 5 October 2000     

Fruiting phenology of palms and trees in an Atlantic rainforest land-bridge island

Tropical forests show periods of scarcity and high fruit production in the same year and/or between years. Palms are an important component of Neotropical rainforests and a significant food resource for several frugivores. Therefore, their role as keystone resource may be exacerbated in highly impoverished areas. In Anchieta Island, São Paulo/Brazil, human settlements have modified and impoverished the forest, mainly through overharvesting and the introduction of exotic plants and several mammal species. We assessed the offer of fruits consumed by vertebrate frugivores at this island, the vegetation of which is belonging to the Brazilian Atlantic rainforest. We compared whether the fruiting patterns and fruit fall differ between palms and trees, and discuss the importance of palms as a food resource for frugivores and the implications for Anchieta Island conservation. Phenological patterns were seasonal for both trees and palms; however, the times of fruiting occurrence differed. Fruit fall biomass was at least twice lower than reported for other Atlantic rain forests and was also different between trees and palms. Palms contributed more than 80% of the overall fruit fall biomass. Palms may constitute an alternative food resource in periods of low fruit availability, although they do not provide resources for the entire assemblage of vertebrate frugivores. Energy-rich fruits, such as those produced by palms, may play an important role in the maintenance of frugivore populations in isolated, disturbed environments with a high density of vertebrate frugivores, low diversity of fruiting species and fruit biomass such as those found on Anchieta Island.     

Structure of ground‐dwelling ant communities in burned and unburned areas in Brazilian subtropical grasslands

Fire is frequently used in the management of pastures in southern Brazil, but its effects on ground‐dwelling ant communities in Brazilian subtropical grasslands is still poorly understood. Here, we compared ant species richness and composition between periodically burned and unburned areas in native grasslands of the Atlantic Forest biome. In total, we found 35 epigeic ant species in burned and unburned areas. There was slightly higher species richness in burned than in unburned areas, independent of the sampling period (season). There was a significant difference in richness over the sampling period (season effect). Species composition varied significantly between the areas, in which nine species (26%) occurred only in burned areas, eight (23%) occurred only in unburned areas, and 18 (51%) occurred in both. Four species showed a significant preference for burned sites (Camponotus crassus, Linepithema humile and two undetermined species of Pheidole and Solenopsis). Although this study did not separate fire effects on ground‐dwelling ant communities (due to sampling design), it provides new information regarding subtropical native grasslands that can be used as a baseline for future studies.     

Individual foraging site fidelity in lactating New Zealand fur seals: Continental shelf vs. oceanic habitats

Wide‐ranging marine central place foragers often exhibit foraging site fidelity to oceanographic features over differing spatial scales (i.e., localized coastal upwellings and oceanic fronts). Few studies have tested how the degree of site fidelity to foraging areas varies in relation to the type of ocean features used. In order to determine how foraging site fidelity varied between continental shelf and oceanic foraging habitats, 31 lactating New Zealand fur seals (Arctocephalus australis forsteri 1 ) were satellite tracked over consecutive foraging trips (14–108 d). Thirty‐seven foraging trips were recorded from 11 females that foraged on the continental shelf, in a region associated with a coastal upwelling, while 65 foraging trips were recorded from 20 females that foraged in oceanic waters. There were no significant differences in the mean bearings (to maximum distance) of individual's consecutive foraging trips, suggesting individual fidelity to foraging areas. However, overlap in area and time spent in area varied considerably between continental shelf and oceanic foragers. Females that foraged on the continental shelf had significantly greater overlap in consecutive foraging trips when compared to females that foraged in oceanic waters (overlap in 5 × 5 km grid cells visited on consecutive trips 55.9%± 20.4% and 13.4%± 7.6%, respectively). Females that foraged on the continental shelf also spent significantly more time within the same grid cell than females that foraged in oceanic waters (maximum time spent in 5 × 5 km grid cells: 14%± 5% and 4%± 2%, respectively). This comparatively high foraging site fidelity may reflect the concentration of productivity associated with a coastal upwelling system, the Bonney Upwelling. Lower foraging site fidelity recorded by seals that foraged in oceanic waters implies a lower density/larger scale habitat, where prey are more dispersed or less predictable at fine scales, when compared to the continental shelf region.     

DISTRIBUTION OF KILLER WHALE PODS IN PRINCE WILLIAM SOUND, ALASKA 1984–1996

Thirteen years of encounter data (1984–1996) were used to examine killer whale distribution within Prince William Sound, Alaska. Four patterns of area use were found, which comprised differences between resident pods and transient groups and differences among resident groups. Resident pods frequented large open passages, while transient groups used the narrow passages and bays in the southwest. This dichotomy likely reflects resident use of salmon and transient use of pinniped prey resources, as well as the different foraging strategies required for these prey types. Four resident pods (AB, AI, AJ, and AN) used Knight Island Passage more than other areas of the Sound; two (AE and AK) used all areas of the Sound more evenly. Use of the Sound by the AT1 transient whales declined in the latter part of the study. Nearshore foraging for pinniped prey by the AT1 transient whales was more common in areas where these whales spend a disproportionate amount of time, suggesting that these areas were critical foraging habitat for them. No similar pattern emerged for Open-water Foraging for cetaceans by AT1 whales, nor for foraging by the resident whales.     

Ethnobotany of Atlantic Forest Coastal Communities: II. Diversity of Plant Uses at Sepetiba Bay (SE Brazil)

This is an ethnobotanical study of Atlantic Forest coastal communities located at Sepetiba Bay, Rio de Janeiro State, Brazil. Atlantic Forest remnants are top priority conservation areas, and include native communities that depend on fish and small-scale agriculture. We conducted fieldwork in the community of Calhaus (Jaguanum Island) from 1989 to 1991, and interviewed adults on their use of plants. We examined the diversity of medicinal plants used among communities of different islands and found results similar to previous research at Gamboa (Itacuruçá Island); communities living in smaller islands and on islands further from the coast use a lower diversity of plants. Also, older islanders show a deeper knowledge of medicinal plants than younger islanders.