Recovery from a fish kill in a semi‐arid Australian river: Can stocking augment natural recruitment processes?

Localized catastrophic events can dramatically affect fish populations. Management interventions, such as stocking, are often undertaken to re‐establish populations that have experienced such events. Evaluations of the effectiveness of these interventions are required to inform future management actions. Multiple hypoxic blackwater events in 2010–2011 substantially reduced fish communities in the Edward‐Wakool river system in the southern Murray‐Darling Basin, New South Wales, Australia. These events led to extensive fish kills across large sections of the entire system following a period of prolonged drought. To expedite recovery efforts, 119 661 golden perch Macquaria ambigua and 59 088 Murray cod Maccullochella peelii fingerlings were stocked at five locations over 3 years. All fish stocked were chemically marked with calcein to enable retrospective evaluation of wild or hatchery origin. Targeted collections were undertaken 3 years post‐stocking to investigate the relative contribution of stocking efforts and recovery via natural recruitment in the system. Of the golden perch retained for annual ageing (n = 93) only nine were of an age that could have coincided with stocking activities. Of those, six were stocked. The dominant year‐class of golden perch were spawned in 2009; before the stocking programme began and prior to blackwater events. All Murray cod retained (n = 136) were of an age that coincided with stocking activities, although only eight were stocked. Among the Murray cod captured, the dominant year‐class was spawned in 2011, after the blackwater events occurred. The results from this study provide first evidence that natural spawning and recruitment, and possibly immigration, were the main drivers of golden perch and Murray cod recovery following catastrophic fish kills. Interpreted in the context of other recent examples, the collective results indicate limited benefit of stocking to existing connected populations already naturally recruiting in riverine systems.     

Distribution of native and introduced fish in the Seven Creeks River system,Victoria

The distribution offish within the Seven Creeks River system, a tributary of the Goulburn River in the Murray–Darling basin, was determined primarily by a survey carried out during the summer of 1975–76. Information on the past occurrence of fish in the system was obtained from historical records. Seventeen species offish, eleven native and six exotic, have been recorded from the system. Habitat characteristics, cohabiting species and food habits are presented for each species recorded during the survey, and factors affecting present distributions are discussed. Siltation appears to have had adverse effects on native Murray cod, Maccullochella peeli, and Macquarie perch, Macquaria australasica, both of which were once common in the lower reaches of the system. The presence of Macquarie perch and the rare native trout cod, Maccullochella macquariensis, in the upper reaches of the system is traced to fish released in 1921 and 1922. A nother native species, the western carp gudgeon, Hypseleotris klunzingeri, was first observed in the system only after it had been introduced into farm dams in the area in the mid 1960s. Relationships between native and introduced fish are complex. Although the food requirements of some native and introduced species overlap and some native fish have been found in the stomachs of introduced species, the only evidence of a substantial effect of an introduced species on a native species is the apparent fragmentation of the range of common mountain galaxiids, Galaxias olidus, by brown trout, Salmo trutta, whose numbers in the system were, until recently, augmented by continual releases of hatchery-reared fish.     

Daily age determination and growth rates of freshwater fish throughout a regulated lotic system of the Murray‐Darling Basin Australia

To facilitate future research in freshwater fish recruitment response to environmental flow delivery, size‐at‐age and growth models are presented for eight fish species occurring in south‐eastern Australia; three small‐bodied species and the juvenile 0+ age classes of five large‐bodied species. Otolith increments were used to estimate the daily age of golden perch Macquaria ambigua, bony bream Nematalosa erebi, common carp Cyprinus carpio; Murray cod Maccullochella peelii, freshwater eel‐tailed catfish Tandanus tandanus, Australian smelt Retropinna semoni, un‐specked hardyhead Craterocephalus stercusmuscarum fulvus and Murray–Darling rainbowfish Melanotaenia fluviatilis. Linear growth models provided the best fit for length‐at‐age data of juvenile 0+ age large‐bodied species; whereas von Bertalanffy growth functions provided the best fit to length‐at‐age data of small‐bodied species. The results provide novel baseline data for future research in this area.     

Differential responses by two closely related native fishes to restoration actions

Globally, river degradation has decimated freshwater fish populations. To help reverse this trend in a southeastern Australia river, we used multiple restoration actions, including reintroduction of instream woody habitat, riparian revegetation, removal of a weir hindering fish movement, fencing out livestock, and controlling riparian weeds. We monitored the responses of native fish at the segment scale (20 km) and reach scale (0.3 km) over 7 years to assess the effectiveness of the different restoration strategies. Two closely related species, Murray cod Maccullochella peeli and trout cod Maccullochella macquariensis, increased at the restored segment compared with the control segment. However, inherent differences between river segments and low sample size hampered assessment of the mechanisms responsible for segment‐scale changes in fish abundance. In contrast, at the reach scale, only M. peeli abundance significantly increased in reaches supplemented with wood. These differential responses by 2 closely related fish species likely reflect species‐specific responses to increased habitat availability and enhanced longitudinal connectivity when the weir improved passage around a fishway. Changes in M. peeli abundance in segments supplemented with and without wood suggest an increase in carrying capacity and not simply a redistribution of individuals within the segment, facilitated the observed expansion. Our findings confirm the need to consider individual fish species' habitat preferences carefully when designing restoration interventions. Further, species‐specific responses to restoration actions provide waterway managers with precise strategies to target fish species for recovery and the potential to predict fish outcomes based on ecological preferences.     

Determining diel variation in fish assemblages downstream of three weirs in a regulated lowland river

The diel variation in boat electrofishing catches was investigated on the lower Murray River (south-eastern Australia), downstream of three low-level weirs. Fish assemblage composition did not differ among three sites, but differed substantially between day and night. Significantly more small-bodied species ( e.g. Australian smelt Retropinna semoni , flyspecked hardyhead Craterocephalus stercusmuscarum , bony herring Nematalosa erebi and Murray rainbowfish Melanotaenia fluviatilis ) and some large-bodied predators ( e.g. golden perch Macquaria ambigua ) were caught during daytime samples. Significantly more flatheaded gudgeon Phylipnodon grandiceps , carp gudgeon Hypseleotris spp. and perch Perca fluviatilis were collected at night. The size composition of the fish assemblage also changed over the diel cycle. Significantly smaller goldfish Carassius auratus , flyspecked hardyhead, bony herring and Australian smelt were sampled during the day, while generally smaller individuals of golden perch and the common carp Cyprinus carpio were caught at night. These findings suggest that sampling during both day and night is required to adequately characterize riverine fish assemblages in the context of fish migration studies.     

Multi-scale habitat selection by Murray cod Maccullochella peelii peelii in two lowland rivers

This study provides information on habitat selection by the threatened Murray cod Maccullochella peelii peelii at two spatial scales in the Ovens and Murray Rivers in south-eastern Australia. Both adult (>450 mm total length, L _T) and age 0 year (<150 mm L _T) M. p. peelii selected macro and microhabitats based on structural variables. At the macrohabitat scale, adults selected channel habitats in the river, floodplain channels at high floods and within Lake Mulwala, whereas the floodplain proper was avoided. Adult and age 0 year fish selected similar microhabitats regardless of site or hydrologic conditions, and selection was primarily influenced by the presence of higher loadings of structural woody habitat, higher c.v. in depth, more overhanging vegetation, shallower comparative depths and lower water velocities, closer to the bank. Age 0 year M. p. peelii appeared to select shallower habitats with greater amounts of structural woody habitat, closer to the river bank than adult fish.     

Comparative movements of four large fish species in a lowland river

A multi‐year radio‐telemetry data set was used to comparatively examine the concurrent movements of the adults of three large‐bodied Australian native freshwater fishes (Murray cod Maccullochella peelii, trout cod Maccullochella macquariensis and golden perch Macquaria ambigua) and the introduced carp Cyprinus carpio. The study was conducted over a reach scale in the regulated Murray River in south‐eastern Australia. Differences were identified in the movements among these species. The predominant behaviour was the use of small movements (<1 km) for all species, and although larger‐scale movements (>1 km) did occur, the frequency varied considerably among species. Large‐scale movements were least evident for M. macquariensis and more common for M. ambigua and C. carpio with these two species also having a greater propensity to change locations. Macquaria ambigua displayed the largest movements and more M. ambigua moved on a ‘continual’ basis. Although a degree of site fidelity was evident for all species, the highest levels were exhibited by M. macquariensis and M. peelii. Homing was also evident to some degree in all species, but was greatest for M. peelii.     

Flow-induced alterations to fish assemblages, habitat and fish–habitat associations in a regulated lowland river

Understanding the cause–effect response of aquatic biota to hydrological variability is fundamental to the restoration of regulated rivers. Spatio-temporal variation in fish assemblage structure, microhabitat cover and fish–habitat associations were investigated in the main channel of the regulated lower River Murray, Australia, during a prolonged period of low within-channel flows and following a high flow event and flood. Several small-bodied species (e.g. carp gudgeon, Hypseleotris spp.), were abundant and significantly associated with submerged macrophytes during low flows, but were absent or significantly less abundant following flooding, and the loss of these microhabitats. Large-bodied riverine species that spawn in response to increases in flow (e.g. golden perch, Macquaria ambigua ambigua) or spawn and recruit in inundated floodplain habitats (e.g. common carp, Cyprinus carpio), exhibited flexible microhabitat use and were significantly more abundant following flooding. In the lower River Murray, high flow events appear integral in structuring fish assemblages, indirectly influencing the abundance of small-bodied fish by re-structuring macrophyte cover and directly influencing the abundance of large-bodied species by facilitating critical life history processes (e.g. recruitment). These results highlight species-specific differences in cause–effect responses to flow variability and have implications for managing flow in regulated rivers.     

Ontogeny of feeding in two native and one alien fish species from the Murray-Darling Basin, Australia

Investigations into the feeding of the early stages of fishes can provide insights into processes influencing recruitment. In this study, we examined ontogenetic changes in morphology and feeding behaviour of two native Australian freshwater species, Murray cod, Maccullochella peelii peelii, and golden perch, Macquaria ambigua, and the alien species, common carp, Cyprinus carpio. Murray cod free embryos are large and well developed at the onset of feeding, whereas the other two species begin exogenous feeding much younger and are smaller and less-developed. Carp commence exogenous feeding 3 days earlier than golden perch, and show more advanced development of the eyes and ingestive apparatus. We conducted feeding experiments, presenting larvae of the three species with a standardised prey mix (comprising equal numbers of small calanoid copepods, large calanoid copepods, small Daphnia, and large Daphnia). Larvae of most tested ages and species showed a preference for mid-sized prey (300–500 μm wide). This was true even when their gapes substantially exceeded the largest prey offered. Daphnia were consumed more than similar-sized copepods. The results of this study suggest that survival through their larval period will be threatened in all three species if catchable prey <500 μm in width are not available throughout such time. They also suggest that interspecific competition for prey may occur, especially when larvae are very young. The precocious development of structures involved in feeding and the extended transition from endogenous to exogenous feeding of early carp larvae are likely to have contributed to the success of this species since its introduction to Australia.     

Does flooding affect spatiotemporal variation of fish assemblages in temperate floodplain wetlands?

1. Floodplain wetlands are productive components of lowland rivers and are thought to be important habitat and nurseries for many fish species. Fish assemblages inhabiting floodplain wetlands vary considerably through space and time and are largely shaped by wetting/drying cycles, although there is little understanding how many aspects of flooding (e.g. magnitude, timing, duration, frequency) influence the fish assemblages. As a consequence, decisions on flooding of wetlands by managers aimed at restoring native fish assemblages are often based on limited knowledge. 2. This study examined the importance of total duration of flooding on the temporal and spatial dynamics of wetland fish assemblages in the Murray River, in south‐eastern Australia. The study examined: (i) how the abundance of 0+ and 1+ fish varied with wetland, season and the duration of wetland filling; (ii) how environmental parameters, including food production changed in relation to the duration of wetland filling; (iii) changes in condition indices for the most abundant species and (iv) changes in species richness and total abundance over time. 3. The 0+ fish assemblage varied more through space and time than the 1+ assemblage. Longer cumulative river–wetland filling was associated with greater total abundances of newly recruited (0+) fish; this was particularly true for common carp (Cyprinus carpio, alien) and carp gudgeon (Hypseleotris spp., native). The body condition of carp gudgeon also increased with the duration of filling, even though static measures of food production declined. The small flooding events that occurred as part of this study did not translate into measurable improvements in the fish assemblage over the longer term (3 years), but did prevent wetlands from drying and thus maintained these habitats as refuges.     

Diet of Murray cod (<Emphasis Type="Italic">Maccullochella peelii peelii</Emphasis>) (Mitchell) larvae in an Australian lowland river in low flow and high flow years

Researchers have hypothesised that influxes of pelagic zooplankton to river channels after floods and high flows are necessary for strong recruitment of some native fish species, including Murray cod (Maccullochella peelii peelii) (Mitchell), in the Murray–Darling river system, Australia. This study investigated the composition of the diet and gut fullness of drifting Murray cod larvae weekly during two spawning seasons with contrasting flows, to determine if pelagic zooplankton comprised a greater proportion of the gut contents and guts were fuller in a high flow (2000) than in a low flow (2001) year. Gut fullness and yolk levels of 267 larvae were ranked, and prey identified to family level. Approximately 40 and 70% of individuals had been feeding in 2000 and 2001, respectively. Gut fullness increased with declining yolk reserves. Larvae in both the years had an almost exclusively benthic diet, irrespective of the flow conditions at the time. Substantial inundation of dry ground in 2000, albeit restricted to in-channel benches, anastomosing channels and oxbow lakes, did not lead to an influx of pelagic, floodplain-derived zooplankton subsequently exploited by Murray cod larvae. These results have the implications for the management of regulated temperate lowland rivers: high flows cannot automatically be assumed to be beneficial for the fish larvae of all species and their food resources, and caution should be exercised with the timing of flow releases.     

Small fish use the hypoxic pelagic zone as a refuge from predators

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Has the invasive round goby caused new links in Baltic food webs?

The Ponto-Caspian round goby (Neogobius melanostomus, Pallas 1814) most probably was established in the Gulf of Gdańsk, Baltic Sea, in the late 1980’s and has since become one of the dominant species in the region. In this study we assess the role of round gobies as prey for two important fish species in the Gulf of Gdańsk, cod (Gadus morhua) and perch (Perca fluviatilis). We compared their present diet with stomach analyses from the area prior the round goby establishment, as well as with diet analysis from Baltic regions where round gobies are absent. There were large differences in the diet between cods from the Gulf of Gdańsk 2003–2006 compared to cods in earlier studies (1977–1981) from the Southern Baltic Sea. There were also large differences in cod and perch diets from areas with and without round goby. Presently, round goby constitutes the most important prey for medium sized cods in Gulf of Gdańsk, and perch from the same area almost exclusively feed on gobiids. Stomach analysis, trophic level estimates, and stable isotope analyses all indicated that cod and perch in Gulf of Gdańsk after the round goby establishment belonged to a similar trophic level. Beside round goby, no mussel feeding fish contributed much to the diet of cod or at all to the diet of perch. Thus, it is likely that round gobies constitute a new energetic pathway from mussels to top predators. However, due to the short time elapsed after round goby establishment, we can only speculate on the species future impacts on Baltic food webs.     

Geomorphology variables predict fish assemblages for forested and endorheic rivers of two continents

Stream fishes are restricted to specific environments with appropriate habitats for feeding and reproduction. Interactions between streams and surrounding landscapes influence the availability and type of fish habitat, nutrient concentrations, suspended solids, and substrate composition. Valley width and gradient are geomorphological variables that influence the frequency and intensity that a stream interacts with the surrounding landscape. For example, in constrained valleys, canyon walls are steeply sloped and valleys are narrow, limiting the movement of water into riparian zones. Wide valleys have long, flat floodplains that are inundated with high discharge. We tested for differences in fish assemblages with geomorphology variation among stream sites. We selected rivers in similar forested and endorheic ecoregion types of the United States and Mongolia. Sites where we collected were defined as geomorphologically unique river segments (i.e., functional process zones; FPZs) using an automated ArcGIS‐based tool. This tool extracts geomorphic variables at the valley and catchment scales and uses them to cluster stream segments based on their similarity. We collected a representative fish sample from replicates of FPZs. Then, we used constrained ordinations to determine whether river geomorphology could predict fish assemblage variation. Our constrained ordination approach using geomorphology to predict fish assemblages resulted in significance using fish taxonomy and traits in several watersheds. The watersheds where constrained ordinations were not successful were next analyzed with unconstrained ordinations to examine patterns among fish taxonomy and traits with geomorphology variables. Common geomorphology variables as predictors for taxonomic fish assemblages were river gradient, valley width, and valley slope. Significant geomorphology predictors of functional traits were valley width‐to‐floor width ratio, elevation, gradient, and channel sinuosity. These results provide evidence that fish assemblages respond similarly and strongly to geomorphic variables on two continents.     

Ontogeny of critical and prolonged swimming performance for the larvae of six Australian freshwater fish species

Critical (<30 min) and prolonged (>60 min) swimming speeds in laboratory chambers were determined for larvae of six species of Australian freshwater fishes: trout cod Maccullochella macquariensis, Murray cod Maccullochella peelii, golden perch Macquaria ambigua, silver perch Bidyanus bidyanus, carp gudgeon Hypseleotris spp. and Murray River rainbowfish Melanotaenia fluviatilis. Developmental stage (preflexion, flexion, postflexion and metalarva) better explained swimming ability than did length, size or age (days after hatch). Critical speed increased with larval development, and metalarvae were the fastest swimmers for all species. Maccullochella macquariensis larvae had the highest critical [maximum absolute 46·4 cm s^?1 and 44·6 relative body lengths (L_B) s^?1] and prolonged (maximum 15·4 cm s^?1, 15·6 L_B s^?1) swimming speeds and B. bidyanus larvae the lowest critical (minimum 0·1 cm s^?1, 0·3 L_B s^?1) and prolonged swimming speeds (minimum 1·1 cm s^?1, 1·0 L_B s^?1). Prolonged swimming trials determined that the larvae of some species could not swim for 60 min at any speed, whereas the larvae of the best swimming species, M. macquariensis, could swim for 60 min at 44% of the critical speed. The swimming performance of species with precocial life‐history strategies, with well‐developed larvae at hatch, was comparatively better and potentially had greater ability to influence their dispersal by actively swimming than species with altricial life‐history strategies, with poorly developed larvae at hatch.     

Habitat preferences and habitat restoration options for small‐bodied and juvenile fish species in the northern Murray–Darling Basin

Degradation of instream habitats in the northern Murray–Darling Basin has occurred through numerous stressors, including siltation, clearing of bankside vegetation, intrusion of livestock and impacts of pest species. A better understanding of habitat preferences of native fish species could help guide future instream habitat restoration actions. The habitat choices of seven native fish species, juvenile Murray Cod (Maccullochella peelii), juvenile Golden Perch (Macquaria ambigua ambigua), juvenile Silver Perch (Bidyanus bidyanus), adult Murray–Darling Rainbowfish (Melanotaenia fluviatilis), adult Olive Perchlet (Ambassis agassizii), adult Un‐specked Hardyhead (Craterocephalus stercusmuscarum fulvus) and adult carp gudgeons (Hypseleotris spp.) were tested in preference troughs to help inform potential habitat restoration actions in the Condamine catchment. Each species was given a choice between pair combinations of open sandy habitat, submerged macrophytes, emergent plants and rocky rubble. Habitat preferences varied between species. Murray Cod, Golden Perch, carp gudgeons and Olive Perchlets preferred structure over open sandy habitat, whilst juvenile Silver Perch, Un‐specked Hardyhead and Murray–Darling Rainbowfish did not avoid open sandy habitats. Juvenile Murray Cod preferred rocky rubble habitat over all other habitat choices. Use of complex rock piles to provide nursery habitat for Murray Cod populations is a potential restoration option. Introduction of rock could also benefit Golden Perch and carp gudgeons. Use of emergent plants, submerged macrophytes and rocky rubble for habitat restoration all appear to have merit for one or more species of small‐bodied fishes or juvenile stages of larger sized fishes. Rocky rubble or floating attached macrophytes could be viable restoration options in areas too turbid to establish submerged macrophytes. These habitat interventions would complement existing actions such as re‐snagging and provision of fish passage to assist with sustainable management of native fish populations.     

Geomorphological characteristics of the Wabash River,USA: Influence on fish assemblages

River hydrogeomorphology is a potential predictor of ecosystem and assemblage variation. We tested for fish assemblage variation as a function of hydrogeomorphology in a Midwestern US large river, the Wabash River. Fish data were classified by taxonomy and traits and we tested if assemblages varied with river hydrogeomorphology or river distance, defined into 10‐km distinct reaches. Three unique geomorphological units, Functional Process Zones (FPZ), were identified using an ArcGIS hydrogeomorphic model, based primarily on channel width, floodplain width, and down valley slope. Five locations were identified as FPZ A with narrow stream channel, high down valley slope, and an expansive floodplain. Ten locations were identified as FPZ B with a wide river channel and wide floodplain. Thirty‐five locations were identified as FPZ C with wide river channel and a constrained floodplain. The sites were categorized into three stream orders: 5, 6, and 7. We found hydrogeomorphology classified by unique FPZs or by river distance influenced taxonomic and functional fish assemblages for the Wabash River. There was high overlap among fish occurrences among FPZs, but nine species resulted as significant indicators of specific FPZs. Five traits were significant indicators of FPZs: an intermediate Swim Factor score, medium tolerance to silt, small‐large stream size preference, and two Shape Factor categories. Our conclusions are that fish assemblages respond strongly to local geomorphology and river distance, fitting the riverine ecosystem synthesis and the river continuum concept.     

Method-integrated fish assemblage structure at two spatial scales along a free-flowing stretch of the Austrian Danube

Fish assemblages in large rivers are highly diverse communities. However, a single method to describe these complex systems adequately is not available as of yet. In this paper we propose a combination of normalized catch-per-unit-effort data of three fish sampling methods, thus providing a more inclusive representation of the overall assemblage. We investigate fish species occurrence and abundance in a survey at three consecutive sites in the free-flowing main channel of the Austrian Danube east of Vienna. Using boat and wading electrofishing, as well as longline fishing we collected data in four mesohabitats at each site. We analysed richness, assemblage structure and abundance of single species and tested site and mesohabitat as differentiating forces on the fish assemblage structure, applying PERMANOVA and NMDS. The investigated sites are populated by a species-rich fish assemblage, of which we collected a total of 36 species. The composition of the assemblage was rather consistent except for the occasional occurrence of rare species. At the smaller mesohabitat scale, however, the assemblages differed considerably and hydromorphological conditions were apparently the major structuring force. Overall, the combination of methods considerably improves the assessment across sites and mesohabitats and contributes to our understanding of large river fish assemblages.     

Linking silver carp habitat selection to flow and phytoplankton in the Mississippi River

Invasive silver carp (Hypothalmichthys molitrix) occurs throughout much of the Mississippi River and threatens the Laurentian Great Lakes. To quantify habitat selection relative to river flow and potential phytoplankton food, 77 adult silver carp were implanted with ultrasonic transmitters during spring 2008 through spring 2009 in adjacent upstream dammed and downstream undammed reaches (48 km total) of the Mississippi River. Sixty-seven percent of the fish were located. Selection of major river habitat features (dammed vs. undammed, backwaters, channel border, wing dikes, island side channels, and the main channel) was quantified. Flow rates and chlorophyll a concentration were compared between silver carp locations and random sites. Foregut chlorophyll a concentrations plus presence of macrozooplankton and detritus of 240 non-tagged silver carp were quantified. About 30% of silver carp moved upstream into the dammed reach, where average flow was slower and chlorophyll a concentration was higher. Silver carp selected wing dike areas of moderate flow (about 0.3 m/s) and elevated chlorophyll a (about 7 μg/L) relative to random sites. No silver carp occurred in areas where flow was absent. Wing dikes were preferred while the main channel was avoided. Chlorophyll a concentrations in guts were positively related to temperature and were unrelated to flow or river chlorophyll a concentration. Macrozooplankton and detritus were rare in guts. Silver carp seek areas of low flow and successfully forage across a range of temperatures, flows, and chlorophyll a concentrations that occur in rivers and large lakes.