河流沉积物氮循环主要微生物的生态特征

微生物驱动的氮循环过程是全球生物地球化学循环的重要组成部分,由于人类活动的影响,氮循环负荷加剧,氮素的生态平衡和微生物的功能特征也相应地受到干扰。河流生态系统是陆地与海洋联系的纽带,因人类活动过量活性氮的输入导致水体富营养化,明显影响着河流的生态功能以及河口沿岸海洋生态系统的平衡。富含微生物的沉积物对氮素的转化和去除起着至关重要的作用。本文主要介绍河流沉积物氮循环主要功能微生物,包括氨氧化细菌、氨氧化古菌、亚硝酸盐氧化菌、反硝化细菌和厌氧氨氧化细菌的群落特征和生态功能,总结氮相关营养盐、溶氧和季节变化等环境因子,以及河道控制管理措施和污水处理厂扰动等条件下氮循环过程主要功能类群的生态特征和响应关系。指出还需深入全面地研究河流沉积物生态系统氮循环过程的驱动机制和微生物的贡献效率,加强城市河流沉积物微生物功能作用的研究及河道生物修复技术的开发。     

EFFECT OF NITROGEN SOURCE ON PLATYMONAS (CHLOROPHYTA) CELL COMPOSITION AND AMINO ACID UPTAKE RATES1

The effect of nitrogen source (nitrate, ammonia and/or amino acids) on cell composition and amino acid uptake rates was examined. Substantial levels of free amino acids accumulated intracellularly with all nitrogen sources used. Ammonia accumulated only when provided in the medium. The presence of ammonia in the medium decreased the intracellular accumulation of free amino acids, especially arginine. Amino acid uptake rates were suppressed by the presence of excess nitrogen, especially ammonia. However, the suppression of uptake did not show any particular relation to the nitrogenous cell composition.     

Blue-light-control of the uptake of amino acids and of ammonia in Chlorella mutants

In non-photosynthetic, yellow or colourless mutant cells of Chlorella kessleri , grown with nitrate as sole nitrogen source, blue light inhibited the uptake of the amino acids glycine, proline and arginine and of ammonia in growing cells, while it enhanced the uptake of these amino acids in resting cells. On the other hand, in cells grown with ammonia as the only nitrogen source without nitrate reductase activity, blue light did not influence the uptake of amino acids and of ammonia in growing cells, while it enhanced the uptake of amino acids in resting cells. Addition of methionine sulphoximine, a potent inhibitor of glutamine synthetase, to growing cells, resulted in intracellular ammonia-accumulation and inhibition of uptake of glycine and of ammonia. For the colourless mutant, blue light was shown to activate purified nitrate reductase. These results indicate that in the mutant cells of Chlorella examined, uptake of ammonia seems to be influenced by nitrate reductase and the uptake of amino acids was influenced by both nitrate reductase and an unknown blue-light-receptor(s). The uptake of urea in mutant cells is not influenced by the irradiation with blue light. Uptake of glycine was also increased after addition of glucose (hexose) in the dark. Because blue light is known to enhance the breakdown of starch, a reaction producing glucose for oxidative degradation in the algae used, the role of glucose (hexose) in the blue light-affected uptake of amino acids is discussed.     

Nitrogen mass balances for pilot-scale biofilm stabilization ponds under tropical conditions

Nitrogen removal in biofilm waste stabilization ponds were modeled using nitrogen mass balance equations. Four pilot-scale biofilm maturation ponds were constructed in Uganda. Pond 1 was control; the others had 15 baffles in each of them. Two loading conditions were investigated (period 1, 18.2 g and period 2, 26.8 g NH₄-N d⁻¹). Total nitrogen and TKN mass balances were made. Bulk water and biofilm nitrification rates were determined and used in the TKN mass balance. Results for total nitrogen mass balance showed that for both periods, denitrification was the major removal mechanism. Nitrogen uptake by algae was more important during period 1 than in period 2. The TKN mass balance predicted well effluent TKN for period 2 than period 1. This could be due to fluctuations in algae density and ammonia uptake during period 1, no conclusions on reliability of mass balance model in period 1 was made.     

Ammonia transformations and abundance of ammonia oxidizers in a clay soil underlying a manure pond

Unlined manure ponds are constructed on clay soil worldwide to manage farm waste. Seepage of ammonia-rich liquor into underlying soil layers contributes to groundwater contamination by nitrate. To identify the possible processes that lead to the production of nitrate from ammonia in this oxygen-limited environment, we studied the diversity and abundance of ammonia-transforming microorganisms under an unlined manure pond. The numbers of ammonia-oxidizing bacteria and anammox bacteria were most abundant in the top of the soil profile and decreased significantly with depth (0.5 m), correlating with soil pore-water ammonia concentrations and soil ammonia concentrations, respectively. On the other hand, the numbers of ammonia-oxidizing archaea were relatively constant throughout the soil profile (10(7) amoA copies per g(soil)). Nitrite-oxidizing bacteria were detected mainly in the top 0.2 m. The results suggest that nitrate accumulation in the vadose zone under the manure pond could be the result of complete aerobic nitrification (ammonia oxidation to nitrate) and could exist as a byproduct of anammox activity. While the majority of the nitrogen was removed within the 0.5-m soil section, possibly by combined anammox and heterotrophic denitrification, a fraction of the produced nitrate leached into the groundwater.     

Spatial and seasonal distribution of heterotrophic bacteria in pond water and sediments under different management practices

Population densities and generation time of heterotrophic bacteria were estimated in water and sediments of fish ponds used for polyculture, monoculture and traditional systems of fish farming over a period of two and a half years. Spatial differences in microbial densities in the ponds were related to the organic loadings of the farm site and farm management. A number of environmental factors such as nitrogen, dissolved organic carbon, bicarbonate and phosphate of water were found to be responsible for the seasonal changes of heterotrophic bacteria in these ponds.     

Nitrogen cycle of Lake Vechten: concentration patterns and internal mass-balance

Concentration patterns of ammonia, nitrate and particulate- and dissolved organic nitrogen in Lake Vechten (The Netherlands) are given. The main processes playing a role in the lake's nitrogen cycle are inventorized. During spring and summer, the uptake of ammonia and nitrate by primary producers, accompanied by sedimentation of organic matter, result in significant nitrogen losses from the 0–6 m stratum. Ammonia accumulates during the stratification in the hypolimnion and after the autumn overturn is recirculated over the whole water column. In winter, release of ammonia from the sediments and nitrification further restore the lake's nutrient supply. The changes in nitrogen content of the different compartments are quantified, giving a basis for more detailed research.     

Amino acid uptake in deciduous and coniferous taiga ecosystems

We measured in situ uptake of amino acids and ammonium across deciduous and coniferous taiga forest ecosystems in interior Alaska to examine the idea that late successional (coniferous) forests rely more heavily on dissolved organic nitrogen (DON), than do early successional (deciduous) ecosystems. We traced ¹⁵N-NH₄⁺ and ¹³C-¹⁵N-amino acids from the soil solution into plant roots and soil pools over a 24 h period in stands of early successional willow and late successional black spruce. Late successional soils have much higher concentrations of amino acid in soil solution and a greater ratio of DON to dissolved inorganic N (DIN) (ammonium plus nitrate) than do early successional soils. Moreover, late successional coniferous forests exhibit higher rates of soil proteolytic activity, but lower rates of inorganic N turnover. Differences in ammonium and amino acid uptake by early successional willow stands were insignificant. By contrast, the in situ uptake of amino acid by late successional black spruce forests were approximately 4-fold greater than ammonium uptake. The relative difference in uptake of ammonium and amino acids in these forests was approximately proportional to the relative difference of these N forms in the soil solution. Thus, we suggest that differences in uptake of different N forms across succession in these boreal forests largely reflect edaphic variation in available soil N (composition), rather than any apparent physiological specialization to absorb particular forms of N. These finding are relevant to our understanding of how taiga ecosystems may respond to increases in temperature, fire frequency, N deposition, and other potential consequences of global change.     

Fate of nitrate acquired by the tubeworm Riftia pachyptila

The hydrothermal vent tubeworm Riftia pachyptila lacks a mouth and gut and lives in association with intracellular, sulfide-oxidizing chemoautotrophic bacteria. Growth of this tubeworm requires an exogenous source of nitrogen for biosynthesis, and, as determined in previous studies, environmental ammonia and free amino acids appear to be unlikely sources of nitrogen. Nitrate, however, is present in situ (K. Johnson, J. Childress, R. Hessler, C. Sakamoto-Arnold, and C. Beehler, Deep-Sea Res. 35:1723-1744, 1988), is taken up by the host, and can be chemically reduced by the symbionts (U. Hentschel and H. Felbeck, Nature 366:338-340, 1993). Here we report that at an in situ concentration of 40 microM, nitrate is acquired by R. pachyptila at a rate of 3.54 micromol g(-1) h(-1), while elimination of nitrite and elimination of ammonia occur at much lower rates (0. 017 and 0.21 micromol g(-1) h(-1), respectively). We also observed reduction of nitrite (and accordingly nitrate) to ammonia in the trophosome tissue. When R. pachyptila tubeworms are exposed to constant in situ conditions for 60 h, there is a difference between the amount of nitrogen acquired via nitrate uptake and the amount of nitrogen lost via nitrite and ammonia elimination, which indicates that there is a nitrogen "sink." Our results demonstrate that storage of nitrate does not account for the observed stoichiometric differences in the amounts of nitrogen. Nitrate uptake was not correlated with sulfide or inorganic carbon flux, suggesting that nitrate is probably not an important oxidant in metabolism of the symbionts. Accordingly, we describe a nitrogen flux model for this association, in which the product of symbiont nitrate reduction, ammonia, is the primary source of nitrogen for the host and the symbionts and fulfills the association's nitrogen needs via incorporation of ammonia into amino acids.     

Regeneration of inorganic phosphorus and nitrogen from decomposition of seston in a freshwater sediment

The mineralization of phosphorus and nitrogen from seston was studied in consolidated sediment from the shallow Lake Arreskov (July and November) and in suspensions without sediment (July). In the suspension experiment, phosphorus and nitrogen were mineralized in the same proportions as they occurred in the seston. During the 30 days suspension experiment, 47 and 43% of the particulate phosphorus and nitrogen, respectively, was mineralized with constant rates.Addition of seston to the sediment had an immediate enhancing effect on oxygen uptake, phosphate and ammonia release, whereas nitrate release decreased due to denitrification. The enhanced rates lasted for 2–5 weeks, while the decrease in nitrate release persisted throughout the experiment. The increase in oxygen uptake (equivalent to 21% of the seston carbon) was, however, only observed in the July experiment. The release of phosphorus and nitrogen from seston decomposing on the sediment surface differed from the suspension experiments. Thus, between 91 and 111% of the phosphorus in the seston was released during the experiments. Due to opposite directed effects on ammonium and nitrate release, the resulting net release of nitrogen was relatively low.A comparison of C/N/P ratios in seston, sediment and flux rates indicated that nitrogen was mineralized faster than phosphorus and carbon. Some of this nitrogen was lost through denitrification and therefore not measurable in the flux of inorganic nitrogen ions. This investigation also suggests that decomposition of newly settled organic matter in sediments have indirect effects on sediment-water exchanges (e.g. by changing of redox potentials and stimulation of denitrification) that modifies the release of mineralized phosphate and nitrogen from the sediment.     

Does N2 fixation meet the nitrogen requirements of heterocystous blue-green algae in shallow eutrophic lakes?

Summary Phytoplankton net carbon uptake and nitrogen fixation were studied in two shallow, eutrophic lakes in South Sweden. Ranges of diurnal net carbon uptake were estimated by subtracting 24-h respiration rates corresponding to 5–20% of P _max, respectively, from daytime carbon uptake values. total nitrogen requirement of the phytoplankton assemblage was determined from the diurnal net carbon uptake, assuming a phytoplankton C:N ratio of 9.5:1. Nitrogen supplied by nitrogen fixation only occasionally corresponded to the demands of the total phytoplankton assemblage. When heterocystous algae made up a substantial proportion (10%) of the total phytoplankton biomass, nitrogen fixation could meet the requirements of heterocystous blue-green algae on c. 50% of the sampling occasions. Nitrogen deficiencies in heterocystous algae were most probably balanced by the simultaneous or sequential assimilation of dissolved inorganic nitrogen. It was concluded that uptake of ammonium or nitrate, regenerated from lake seston and sediment, is the main process by which growth of phytoplankton is maintained during summer in the lake ecosystems studied.     

红树林生态系统微生物驱动的氮素循环过程研究进展

微生物驱动的氮循环过程在红树林生态系统物质循环、净化外来污染物、维持生态系统平衡等方面起重要作用。相较于其他自然生态系统,因红树林处于沿海陆地交界地带,其氮循环过程及其相关微生物的种类丰富,受交错复杂的环境因素影响与调控。本文梳理了红树林土壤性质及特性,综述了红树林生态系统中由微生物驱动的固氮、氮素矿化、硝化、厌氧氨氧化、反硝化、异化硝酸盐还原为铵等主要的氮循环过程,并讨论了氮循环与其他循环的耦合过程。最后讨论pH、盐度、季节、螃蟹活动、红树林树种等环境因素对氮循环过程及其相关微生物丰度、多样性的影响。本综述以期为红树林湿地生态系统的保护和修复提供理论参考。     

湖泊氮素氧化及脱氮过程研究进展

自然界中氮的生物地球化学循环主要由微生物驱动,由固氮作用、硝化作用、反硝化作用和氨化作用来完成。过去数十年间,随着异养硝化、厌氧氨氧化和古菌氨氧化作用的发现,人们对环境中氮素循环认识逐步深入,提出了多种脱氮途径新假说。对湖泊生态系统中氮素的输入、输出及其在水体、沉积物和水土界面的迁移转化过程进行了概括,对湖泊生态系统中反硝化和厌氧氨氧化脱氮机理及脱氮效率的最新研究进展进行了探讨,并对以后的氮素循环研究进行了展望。     

Modeling nitrogen removal in water hyacinth ponds receiving effluent from waste stabilization ponds

We developed a dynamic model to predict nitrogen removal in water hyacinth ponds (WHPs) receiving effluent from waste stabilization ponds (WSPs). The model is based on the biofilm reaction on the root surface of plant and pond walls. The model consists of mass balances of six main substrates including: particulate organic nitrogen (PON), dissolved organic nitrogen (DON), ammonium (NH₄⁺), nitrite and nitrate (NOx), soluble chemical oxygen demand (SCOD), and particulate chemical oxygen demand (PCOD). The model, incorporating major nitrogen transformation mechanisms such as hydrolysis, mineralization, and nitrification–denitrification, accounts also for carbon consumption and plant uptake. The model's application to a pilot plant showed good agreement between measured and predicted values. According to the modeling results, in the WHPs, nitrification and denitrification were the predominant nitrogen removal processes occurring simultaneously. Temperature and hydraulic retention time (HRT) had a profound effect on the performance of nitrogen removal while an algae biomass (PCOD) accumulated in the WHPs, was a useful carbon source for denitrification.     

Nitrogen Limitation of Pond Ecosystems on the Plains of Eastern Colorado

Primary production in freshwater ecosystems is often limited by the availability of phosphorus (P), nitrogen (N), or a combination of both (NP co-limitation). While N fixation via heterocystous cyanobacteria can supply additional N, no comparable mechanism for P exists; hence P is commonly considered to be the predominant and ultimate limiting nutrient in freshwater ecosystems. However, N limitation can be maintained if P is supplied in stoichiometric excess of N (including N fixation). The main objective of this study was to examine patterns in nutrient limitation across a series of 21 vernal ponds in Eastern Colorado where high P fluxes are common. Across all ponds, water column dissolved inorganic N steadily decreased throughout the growth season due to biological demand while total dissolved P remained stable. The water column dissolved inorganic N to total dissolved P ratios suggested a transition from NP co-limitation to N limitation across the growth season. Periphyton and phytoplankton %C was strongly correlated with %N while %P was assimilated in excess of %N and %C in many ponds. Similarly, in nutrient addition bottle assays algae responded more strongly to N additions (11 out of 18 water bodies) than P additions (2 out of 18 water bodies) and responded most strongly when N and P were added in concert (12 out of 18 water bodies). Of the ponds that responded to nutrient addition, 92% exhibited some sort of N limitation while less than 8% were limited by P alone. Despite multiple lines of evidence for N limitation or NP co-limitation, N fixation rates were uniformly low across most ponds, most likely due to inhibition by water column nitrate. Within this set of 18 water bodies, N limitation or NP co-limitation is widespread due to the combination high anthropogenic P inputs and constrained N fixation rates.     

Nitrogen nutrition in the cyanobacterium Nostoc ANTH, a symbiotic isolate from Anthoceros: uptake and assimilation of inorganic-n and amino acids

Amino acid uptake and utilization of various nitrogen sources (amino acids, nitrite, nitrate and ammonia) were studied in Nostoc ANTH and i ts mu tant (Het(-)Nif(-)) isolate defective in heterocyst formation and N2-fixation. Both parent and its mutant grew at the expense of glutamine, asparagine and arginine as a source of fixed-nitrogen. Growth was better in glutamine-and asparagine-media as compared to that in arginine media. Glutamine and asparagine repressed heterocyst formation, N2-fixation and nitrate reduction in Nostoc ANTH, but arginine did so only partially. The poor growth in arginine-medium was not due to poor uptake rates, since the uptake rates were not significantly different from those for glutamine or asparagine. The glutamine synthetase activity remained unaffected during cultivation in media containing any one of the three amino acids tested. The uptake of amino acids was substrate-inducible, energy-dependent and required de novo protein synthesis. Nitrate and ammonium repressed ammonium uptake, but did not repress uptake of amino acids. In N2-medium (BG-11(0)), the uptake of ammonium and amino acids in the mutant was significantly higher than its parent strain. This was apparently due to nitrogen limitation since the mutant was unable to fix N2 and the growth medium lacked combined-N.     

Nitrogen processing and retention in Hungarian carp farms

Based upon a detailed study carried out 20 years ao on the sediment nitrogen content in the commercial carp ponds of Horv?thpuszta intensive farm and upon the reexamination of the same 19 ponds, we found an average annual rate of nitrogen accumulation of 174 pg N g^-' dry sediment. Nitrogen budgeting for the 20 years (1970–1990) was completed for input nitrogen sources of inorganic fertilization, duck feed, fish feed, manure, atmosphere deposition, filling water and nitrogen fixation, as well as for output sources of alfalfa, fish, rice, duck yield, drainage water and denitrification. The average annual nitrogen retention of 93 kg ha^-1 corresponded well to the 174 μg Ng^-1 measured value of nitrogen accumulation. During the 20 years of nitrogen accumulation on industrialized agricultural land of Hungary, the intensive fish farm received altogether 1246 tonnes of nitrogen and released only 686 tonnes to the environment. Therefore removing, processing and accumulating most of the available nitrogen while minimizing the pollution to the environment is one of the challenges for the future for both aquacultural and agricultural activities.     

Nitrogen metabolite repression of nitrate reductase in Neurospora crassa.

The effect of different nitrogen compounds on the induction of reduced nicotinamide adenine dinucleotide phosphate-nitrate reductase was examined in Neurospora crassa. Whereas in the wild-type strain several amino acids and ammonia inhibit the formation of nitrate reductase, only glutamine, cysteine, and histidine are shown to inhibit the synthesis of nitrate reductase in a glutamine-requiring auxotroph. None of the amino acids inhibited nitrate reductase activity in vitro. The effects of cysteine and histidine are nonspecific, these amino acids being inhibitory of the growth of the organism. The effect of glutamine on the induction of nitrate reductase is not due to an inhibition of the uptake of the inducer nitrate. By the use of histidine-, pyrimidine-, and arginine-requiring auxotrophs, it was shown that glutamine appears to act per se and does not seem to be converted to another product in order to be effective in repression. The repression of nitrate reductase by ammonia appears, from the results described herein, to be indirect; ammonia has to be converted first to glutamine in order to be effective in repression.     

Nitrogen metabolism in plant cell suspension cultures: I. Effect of amino acids on growth

Certain amino acids inhibit growth of tobacco (Nicotiana tabacum L. var. xanthi), tomato (Lycopersicon esculentum) carrot (Daucus carota), and soybean (Glycerine max L. co. Mandarin) cell cultures when nitrate or urea are the nitrogen sources but not when ammonia is the nitrogen source. These amino acids also inhibit development of nitrate reductase activity (NADH:nitrate oxidoreductase EC 1.6.6.1) in tobacco and tomato cultures. Threonine, the most inhibitory amino acid, also inhibits nitrate uptake in tobacco cells. Arginine, and some other amino acids, abolish the inhibition effects caused by other amino acids. We suggest that amino acids inhibit assimilation of intracellular ammonium into amino acids in cells grown on nitrate or urea.     

Apparent and Measured Rates of Nitrification in the Hypolimnion of a Mesotrophic Lake

Three distinct phases were observed in the change of dissolved inorganic nitrogen concentrations in the hypolimnion of Grasmere. The second phase of decreasing ammonia and increasing nitrate concentrations was typical of the nitrification process. Observations on nitrate concentration gradients between surface sediments and the water column and experiments using the nitrification inhibitor N-Serve indicated the in situ activity of chemolithotrophic nitrifying organisms. Nitrification rates were estimated throughout the period of stratification by using the N-Serve and [¹⁴C]bicarbonate uptake method. Comparison of the field nitrate concentrations with the predicted nitrate concentrations (from estimates of the nitrification rate) indicated that the method underestimated the true rate of nitrification. Possible reasons for this are discussed.