Two new species ofLitomosoides (Nematoda: Onchocercidae) from pocket gophers (Rodentia: Geomyidae) in Colorado

Summary Two new species of nematodes representing the genusLitomosoides were obtained from pocket gophers collected in the early 1960s and during 1982 in Colorado. Individuals ofLitomosoides thomomydis n. sp. were recovered from the abdominal cavities of two species of pocket gopher,Thomomys talpoides (Richardson) andT. bottae (Eydoux & Gervais). Nematodes representingL. westi n. sp. were recovered from the abdominal and pleural cavities of the plains pocket gopherGeomys bursarius (Shaw) from eastern Colorado. These two species of filarioid nematodes appear to be restricted in geographical range to those pocket gophers inhabiting the central grasslands and Rocky Mountain region of the United States and Canada. ac]19851217     

Exploring phylogeography and species limits in the Altai vole (Rodentia: Cricetidae)

Natural hybridization between species is not a rare event. In arvicoline rodents, hybridization is known to occur in the wild and/or in captivity. In the Microtus arvalis group, cytogenetic studies revealed that there were two distinct chromosomal forms (2n = 46 but a different fundamental number of autosomes). These forms have been attributed to two cryptic species: the common (arvalis) and Altai (obscurus) voles. Recently, individuals with intermediate karyotypes (F₁ and backcrosses) were discovered in central European Russia, and, for this reason, other studies have regarded obscurus and arvalis as conspecific. In the present study, to address the question of the species limits in the Altai vole and to infer its evolutionary history, a phylogeographical analysis combined with multivariate morphometric methods and original chromosome data was performed. Two obscurus lineages were identified: the Sino‐Russian and South Caucasian lineages. Both lineages are characterized by low genetic diversity, resulting, in the former, from a past bottleneck event caused by encroaching periglacial areas and, in the latter, from recent rapid population divergence. Introgressive hybridization between the Altai and common voles appears to be the result of a secondary contact following the Last Glacial Maximum in central European Russia. Despite the fact that speciation is an ongoing process in most arvicoline species, the common and Altai voles are genetically divergent, morphologically and karyologically distinct, and exhibit contrasting evolutionary histories. For all these reasons, they should be ranked as species: M. arvalis and M. obscurus. © 2013 The Linnean Society of London     

Genetic similarity between species of Akodon (Rodentia, Cricetidae)

Genetic similarity between species of rodents of the Akodon genus (A. dolores, A. molinae, and A. azarae) has been estimated by analysis of electrophoretic zymograms corresponding to 23 loci. Nei's coefficient between A. dolores and A. molinae was within the range usually found in conspecific populations. This evidence plus the successful production of "hybrids" (Merani et al., J. Exp. Zool., 206:343-346, '78) suggests that A. dolores and A. molinae may represent geographic races of the same species.     

A new species of Syphacia (Nematoda: Oxyuridae) from Akodon azarae (Rodentia: Cricetidae) in Argentina

Eight species of Syphacia (Nematoda: Oxyuridae) have been reported from South America in rodents of the Sigmodontinae, only 1 of which has been recorded in Argentina. Syphacia (Syphacia) carlitosi n. sp. is described from the ceca of Akodon azarae bibianae and Akodon azarae hunteri (Sigmodontinae: Akodontini) captured in 3 provinces in the northeast region of Argentina. The new species is differentiated principally by the shape of the cephalic plate; distribution of submedian papillae and amphids; presence, extent, and shape of cervical alae in females; absence of lateral alae; absence of deirids; spicular and gubernaculum length; shape and structure of accessory hook of gubernaculum; and distance of mamelons, excretory pore, and vulva from the anterior extremity. This is the second record of Syphacia parasitizing rodents of the tribe Akodontini.     

A new angiostrongylid (Nematoda) species from the pulmonary arteries of Akodon azarae (Rodentia: Cricetidae) in Argentina

Angiostrongylus morerai n. sp. (Nematoda: Angiostrongylidae) is described from the pulmonary arteries of Azara's grass mouse Akodon azarae (Rodentia: Cricetidae) in Argentina. It is distinguished from its congeners principally by the morphology of the dorsal ray, which is as long, or longer, than the externodorsals and has 2 long branches; the spicule lengths are also greater (400-465 microm). This is the first record of a metastrongyloid from sigmodontine rodents in Argentina.     

2 new species of Stilestrongylus (Nematoda: Heligmonellidae) parasites of Peromyscus (Rodentia: Cricetidae) from Mexico

Stilestrongylus peromysci n. sp. collected from Peromyscus difficilis (Hidalgo state, México), differs from other species in the genus in number of the spines (30) in the synlophe (both sexes) and because the eighth ray arises from the root of the ninth ray; S. hidalguensis n. sp. parasitised Peromyscus sp. and differs from all other congeneric species in the presence of 24 spines in the male synlophe and in the arrangement of the bursal rays (2-2-1 in the right lobe and 2-3 in the left lobe). A key to the species of Stilestrongylus is provided.     

Taxonomic validity of species groups in the genus Akodon (Rodentia,Cricetidae)

In an effort to evaluate the four Akodon species groups, phylogenetic relationships among individuals of the genus Akodon, selected from throughout South America, were examined using cytochrome b and a concatenated data set consisting of data from cytochrome b, exon 6 of the dentin matrix protein 1 and the nuclear intron thyrotropin. Both the cytochrome b data set and the combined data set were analysed under maximum parsimony, maximum likelihood and Bayesian criteria. Like previous studies, a monophyletic Akodon clade was recovered. Monophyly of the boliviensis and cursor groups was supported, and the two form a strongly supported sister relationship. Akodon azarae is basal to and forms a monophyletic group with the boliviensis + cursor clade, resolving the placement of A. azarae but leaving it unassignable to a current Akodon species group. The aerosus and varius groups are paraphyletic as four members of the varius group (A. glaucinus, A. simulator, A. tartareus and A. varius) fall within the aerosus group. Akodon lindberghi is formally placed in the cursor group. Akodon caenosus is recognized as a species distinct of A. lutescens, A. orientalis is recognized as a species distinct of A. orophilus, and A. aerosus, A. baliolus and A. surdus are recognized as three separate species. Based upon chronophylogenetic analysis, the initial divergence within Akodon likely began during the late Pliocene and ancestors of the four extant species groups (aerosus, boliviensis, cursor and dolores) appeared around the Pleistocene–Pliocene boundary or shortly thereafter.     

Description of a new species of Moniliformis (Acanthocephala: Moniliformidae) from Peromyscus hylocetes (Rodentia: Cricetidae) in Mexico

Moniliformis ibunami n. sp., is described from the intestine of the transvolcanic deermouse Peromyscus hylocetes Merriam 1898 (Cricetidae) from Parque Nacional Nevado de Colima “El Floripondio”, Jalisco, Mexico. The new species can be distinguished morphologically from the other 18 congeneric species of Moniliformis by a combination of morphological and molecular characters including the number of hooks on the proboscis (12 longitudinal rows, each one with six to eight transversally arranged unrooted hooks), the proboscis length (230–270 μm), the female trunk length (159–186 mm) and egg size (40–70 × 20–40). For molecular distinction, nearly complete sequences of the small subunit (SSU) and large subunit (LSU) of the nuclear ribosomal DNA and cytochrome oxidase subunit 1 (cox 1) of the mitochondrial DNA of the new species were obtained and compared with available sequences downloaded from GenBank. Phylogenetic analyses inferred with the three molecular markers consistently showed that Moniliformis ibunami n. sp. is sister to other congeneric species of Moniliformis. The genetic distance with cox 1 gene among Moniliformis ibunami n. sp., M. saudi, M. cryptosaudi, M. kalahariensis, M. necromysi and M. moniliformis ranged from 20 to 27%. Morphological evidence and high genetic distance, plus the phylogenetic analyses, indicate that acanthocephalans collected from the intestines of transvolcanic deer mice represent a new species which constitutes the seventh species of the genus Moniliformis in the Americas.     

DNA barcoding of Murinae (Rodentia: Muridae) and Arvicolinae (Rodentia: Cricetidae) distributed in China

Identification of rodents is very difficult mainly due to high similarities in morphology and controversial taxonomy. In this study, mitochondrial cytochrome oxidase subunit I (COI) was used as DNA barcode to identify the Murinae and Arvicolinae species distributed in China and to facilitate the systematics studies of Rodentia. In total, 242 sequences (31 species, 11 genera) from Murinae and 130 sequences (23 species, 6 genera) from Arvicolinae were investigated, of which 90 individuals were novel. Genetic distance, threshold method, tree‐based method, online BLAST and BLOG were employed to analyse the data sets. There was no obvious barcode gap. The average K2P distance within species and genera was 2.10% and 12.61% in Murinae, and 2.86% and 11.80% in Arvicolinae, respectively. The optimal threshold was 5.62% for Murinae and 3.34% for Arvicolinae. All phylogenetic trees exhibited similar topology and could distinguish 90.32% of surveyed species in Murinae and 82.60% in Arvicolinae with high support values. BLAST analyses yielded similar results with identification success rates of 92.15% and 93.85% for Murinae and Arvicolinae, respectively. BLOG successfully authenticated 100% of detected species except Leopoldamys edwardsi based on the latest taxonomic revision. Our results support the species status of recently recognized Micromys erythrotis, Eothenomys tarquinius and E. hintoni and confirm the important roles of comprehensive taxonomy and accurate morphological identification in DNA barcoding studies. We believe that, when proper analytic methods are applied or combined, DNA barcoding could serve as an accurate and effective species identification approach for Murinae and Arvicolinae based on a proper taxonomic framework.     

Phylogenetic relationships among species of the genus Oligoryzomys (Rodentia,Cricetidae) from Central and South America

González‐Ittig, R. E., Salazar‐Bravo, J., Barquez, R. M. & Gardenal, C. N. (2010). Phylogenetic relationships among species of the genus Oligoryzomys (Rodentia, Cricetidae) from Central and South America. —Zoologica Scripta, 39, 511–526. The genus Oligoryzomys includes several species very similar in external morphology, which has resulted in a confusing specific taxonomy. Accurate species identification is particularly important because several species of Oligoryzomys act as natural hosts of hantaviruses affecting humans. Here, we assign specific status to individuals from a wide geographical area of Argentina and Chile using sequences of the mtDNA control region. We also compare cytochrome b sequences of 14 species recognized from Central and South America to infer the phylogenetic relationships within the genus. In addition, the results were analysed using available data on chromosome numbers, and the host–parasite relationships reported for the genus Hantavirus. We confirm the geographical distribution of Oligoryzomys longicaudatus (Argentina, Chile), Oligoryzomys nigripes (Argentina, Paraguay, Brazil), Oligoryzomys chacoensis (Argentina, Bolivia, Paraguay), Oligoryzomys fornesi (Argentina, Paraguay), Oligoryzomys destructor (Argentina, Bolivia) and Oligoryzomys microtis (Bolivia, Brazil). Oligoryzomys longicaudatus is strongly related to the Oligoryzomys flavescens complex, which comprises four clades; O. nigripes is closely related to Oligoryzomys stramineus, and Oligoryzomys vegetus, to Oligoryzomys fulvescens from Central America. Oligoryzomys chacoensis, O. destructor, O. fornesi, O. longicaudatus, O. microtis, O. nigripes, O. stramineus, Oligoryzomys moojeni, Oligoryzomys rupestris, O. fulvescens and O. vegetus are confirmed as valid species, whereas O. flavescens, Oligoryzomys magellanicus, Oligoryzomys griseolus, Oligoryzomys victus, Oligoryzomys andinus and Oligoryzomys arenalis need exhaustive revision. The sister species to all the remaining entities of the genus was O. microtis, suggesting an Amazonian origin for the genus.     

A new species of Syphacia (Nematoda: Oxyuridae) from Calomys laucha (Rodentia: Cricetidae) in an agroecosystem of central Argentina

A new oxyurid nematode Syphacia hodarae n. sp. is described from the cecum and rectum of the cricetid rodent Calomys laucha Fischer, 1814 (Sigmodontinae, Phyllotini), captured in an agroecosystem of central Argentina. The new species is distinguished from other members of the genus mainly by the shape of the cephalic plate, presence of cervical alae in females, absence of lateral alae, and absence of deirids. Some characters are shared with Syphacia carlitosi, a parasite of Akodon azarae from the wetlands in Argentina. However, S. hodarae can be differentiated from this species by the absence of ornamentation on the accessory hook of the gubernaculum, length of spicule and gubernaculum, size of the eggs, and distance to the vulva from the anterior end. This is the first record of a Syphacia species from the tribe Phyllotini in Argentina, and the first time a Syphacia species is reported from C. laucha .     

A new genus and species of lungworm (Nemata: Metastrongyloidea) from Akodon mollis Thomas, 1894 (Rodentia: Cricetidae) in Peru

Akodonema luzsarmientae n.g., n.sp. (Nemata: Metastrongyloidea) is described from the pulmonary arteries and heart from several individuals of "soft grass mouse," Akodon mollis (Rodentia: Cricetidae), collected in the region of Ancash, Peru. The new genus and species is distinguished by a reduction of the dorsal ray to 2 small widely separated papillae.     

Multilocus phylogenetics of a rapid radiation in the genus Thomomys (Rodentia: Geomyidae)

Species complexes undergoing rapid radiation present a challenge in molecular systematics because of the possibility that ancestral polymorphism is retained in component gene trees. Coalescent theory has demonstrated that gene trees often fail to match lineage trees when taxon divergence times are less than the ancestral effective population sizes. Suggestions to increase the number of loci and the number of individuals per taxon have been proposed; however, phylogenetic methods to adequately analyze these data in a coalescent framework are scarce. We compare two approaches to estimating lineage (species) trees using multiple individuals and multiple loci: the commonly used partitioned Bayesian analysis of concatenated sequences and a modification of a newly developed hierarchical Bayesian method (BEST) that simultaneously estimates gene trees and species trees from multilocus data. We test these approaches on a phylogeny of rapidly radiating species wherein divergence times are likely to be smaller than effective population sizes, and incomplete lineage sorting is known, in the rodent genus, Thomomys. We use seven independent noncoding nuclear sequence loci (total approximately 4300 bp) and between 1 and 12 individuals per taxon to construct a phylogenetic hypothesis for eight Thomomys species. The majority-rule consensus tree from the partitioned concatenated analysis included 14 strongly supported bipartitions, corroborating monophyletic species status of five of the eight named species. The BEST tree strongly supported only the split between the two subgenera and showed very low support for any other clade. Comparison of both lineage trees to individual gene trees revealed that the concatenation method appears to ignore conflicting signals among gene trees, whereas the BEST tree considers conflicting signals and downweights support for those nodes. Bayes factor analysis of posterior tree distributions from both analyses strongly favor the model underlying the BEST analysis. This comparison underscores the risks of overreliance on results from concatenation, and ignoring the properties of coalescence, especially in cases of recent, rapid radiations.     

Locomotory adaptations in entoptychine gophers (Rodentia: Geomyidae) and the mosaic evolution of fossoriality

Pocket gophers (family Geomyidae) are the dominant burrowing rodents in North America today. Their fossil record is also incredibly rich; in particular, entoptychine gophers, a diverse extinct subfamily of the Geomyidae, are known from countless teeth and jaws from Oligocene and Miocene-aged deposits of the western United States and Mexico. Their postcranial remains, however, are much rarer and little studied. Yet, they offer the opportunity to investigate the locomotion of fossil gophers, shed light on the evolution of fossoriality, and enable ecomorphological comparisons with contemporaneous rodents. We present herein a quantitative study of the cranial and postcranial remains of eight different species of entoptychine gophers as well as many contemporary rodent species. We find a range of burrowing capabilities within Entoptychinae, including semifossorial scratch-digging animals and fossorial taxa with cranial adaptations to burrowing. Our results suggest the repeated evolution of chisel-tooth digging across genera. Comparisons between entoptychine gophers and contemporaneous rodent taxa show little ecomorphological overlap and suggest that the succession of burrowing rodent taxa on the landscape may have had more to do with habitat partitioning than competition.     

Genome analysis of Peromyscus (Rodentia,Cricetidae)

A satellite DNA fraction from P. eremicus, having a buoyant density of 1.705 g/ml in neutral CsCl density gradients, was isolated. In situ hybridization experiments, using 3H-RNA complementary to this DNA fraction indicated that the short (heterochromatic) arms of most of the autosomes contained this sequence. Conversely, in situ hybridization using 3H-complementary DNA (cDNA) synthesized from the cytoplasmic poly (A) RNA of P. eremicus (comprising a substantial fraction of total messenger RNA) showed that the number of silver grains in the long arms (euchromatin) was significantly higher than that in the short arms. The X chromosomes showed a distinct localization pattern of both sequences.     

Hidden heterochromatin: Characterization in the Rodentia species Cricetus cricetus, Peromyscus eremicus (Cricetidae) and Praomys tullbergi (Muridae)

The use of in situ restriction endonuclease (RE) (which cleaves DNA at specific sequences) digestion has proven to be a useful technique in improving the dissection of constitutive heterochromatin (CH), and in the understanding of the CH evolution in different genomes. In the present work we describe in detail the CH of the three Rodentia species, Cricetus cricetus, Peromyscus eremicus (family Cricetidae) and Praomys tullbergi (family Muridae) using a panel of seven REs followed by C-banding. Comparison of the amount, distribution and molecular nature of C-positive heterochromatin revealed molecular heterogeneity in the heterochromatin of the three species. The large number of subclasses of CH identified in Praomys tullbergi chromosomes indicated that the karyotype of this species is the more derived when compared with the other two genomes analyzed, probably originated by a great number of complex chromosomal rearrangements. The high level of sequence heterogeneity identified in the CH of the three genomes suggests the coexistence of different satellite DNA families, or variants of these families in these genomes.