Distribution of erythrocytic allozymes in two sibling species of greater galago [Galago crassicaudatus E. Geoffroy 1812 and G. garnettii (Ogilby 1838)]

This study investigated the use of erythrocyte enzymes as indicators of the presence or absence of gene flow between the sibling species G. crassicaudatus and G. garnettii. Fifty-five animals deriving from 14 different source populations were included in the analyses. In addition to hemoglobin, eight enzyme systems were examined: acid phosphatase, adenylate kinase, carbonic anhydrase II, esterase D, glucose-6-phosphate dehydrogenase, 6-phosphogluconate dehydrogenase, peptidase A, and peptidase B. of these, adenylate kinase, glucose-6-phosphate dehydrogenase, hemoglobin, peptidase A, and peptidase B showed no interspecific or intraspecific variation. Esterase D was polymorphic in certain populations of G. crassicaudatus but not in others or in G. garnettii. Acid phosphatase and 6-phosphogluconate dehydrogenase were polymorphic in G. garnettii but monomorphic in all G. crassicaudatus populations. The taxa showed fixation for different alleles at the carbonic anhydrase II locus, indicating a lack of gene exchange between the taxa. We suggest that acid phosphatase, 6-phosphogluconate dehydrogenase, and carbonic anhydrase II may be used as genetic markers in the identification of these two taxa.     

Isolation of females prior to parturition reduces neonatal mortality in Galago

Eighteen years of birth records for three species of Galago at the Duke University Primate Center were examined to determine the effects of isolation of pregnant females on neonatal mortality rates. Isolation significantly decreased neonatal mortality rates in all three species over neonatal mortality rates in infants born to unisolated females. The frequency of cannibalism of infants did not differ between isolated and unisolated females. Secondary sex ratio differed significantly from 1:1 for all three species, but higher mortality in males in the first 10 days of life resulted in sex ratios that did not differ from 1:1 in G. garnettii and G. crassicaudatus.     

Morphological analysis of three equivocal sibling species of Deprea (Solanaceae)

Taxonomic confusion among closely related and morphologically similar Deprea species has persisted in the literature and in the identification of species. Morphological variation among three closely related, monophyletic Deprea species was studied to determine if and how they can be distinguished. Their sympatric occurrence in Venezuela afforded an opportunity to couple field study with analysis of herbarium specimens representing their entire geographic range. An analysis of 94 morphological characters resulted in five vegetative and 13 reproductive taxonomically informative traits. Canonical variates analysis clearly separated the three species using six quantitative traits. We conclude that these taxa, although quite variable and similar morphologically, are taxonomically distinct. Results of character analysis indicated that D. orinocensis is morphologically more similar to D. bitteriana than either are to D. paneroi. In D. paneroi, small, sterile anthers on fruit-bearing plants and the absence of fruits on plants possessing large, plllen-bearing anthers, suggest cryptic dioecy. Based on these data, D. granulosa is considered to be a synonym of D. orinocensis: Athenaea bitteriana, a misapplied synonym, is the correct basionym and is applicable to many specimens identified as D. granulosa. We submit a new combination, D. bitteriana (Werderm.) Sawyer & Benítez, and designate a lectotype to accommodate these findings.     

Morphological analysis of male mating organ in the Drosophila virilis species group: a multivariate approach

The shape of the male mating organ differs among 11 closely related species of the Drosophila virilis species group. Multivariate analyses of variation of a suite of 35 morphological traits (indices) describing the phallus shape were carried out in order to characterize interspecies variability of the traits. An overwhelming majority of the traits displayed species‐specific variability. The main result of the investigation was the revelation of the differences involved in the traits studied in the evolution of the D. virilis species group. The structure of species‐specific variability of some traits was discovered to be in accordance with the generally accepted taxonomy of the species group, while that of other traits required isolation of D. virilisper se from lummei phylad (former virilis phylad), and confirmed separation of montana phylad into three subphylads: montana proper, littoralis and kanekoi. Several subsets of traits having separate variability were determined in different parts of the male mating organ which correspond to spots of evolutionarily significant variability.     

Genetics of species re-introductions: Applications of genetic analysis

The value of obtaining genetic information as a prerequisite to management decisions regarding rare plant species is assessed using specific examples. The conclusions derived indicate that specific genetic information can help direct planning, strategy and development and the allocation of resources. However, such information can also be valueless in management terms because the information obtained, by its nature, cannnot always be interpreted unambigously, and thus is unable to provide the predictive certainty that is often required or expected by management personnel. It is important that such caveats be clear to management personnel before applying genetic studies for applied purposes.     

Anthropometric analysis of the face in hypohidrotic ectodermal dysplasia: a family study

Sixteen individuals with hypohidrotic ectodermal dysplasia (HED) were compared to normal standards as well as to 16 unaffected family members by using a series of 20 anthropometric measurements of the head and face. Individuals with HED were generally smaller than normal controls or their unaffected relatives. However, this size reduction was not uniform. Instead, it was most evident in the anterior-posterior dimensions of the lower two-thirds of the face, in facial height, and in the size of the ears, nose, and mouth. A stepwise discriminant function analysis indicated that a function constructed from four variables (depth of the lower face, width of the nose, mandibular arc, and total facial height) could accurately classify 96.7% of the 32 individuals in the combined sample of affected and unaffected individuals. These findings demonstrated that the face of individuals with HED is unique and can be useful in its diagnosis. Additional studies are needed to determine if similar-though-less-pronounced facial abnormalities can be used to detect minimally affected gene carriers of this presumably X-linked condition.     

Daily rhythms of body temperature and heat production of sibling Mastomys species from different ecosystems--the response to photoperiod manipulations

We compared body temperature (T_b) and metabolic rates, measured as oxygen consumption (VO₂), daily rhythms of two sibling species of the genus Mastomys. We also studied their responses to long day (16L: 8D, LD) and short day (8L: 16D, SD) photoperiod manipulations at a constant ambient temperature of 26 + 1 °C. We noted significant differences in T_b and VO₂ daily rhythm patterns, under SD and LD-acclimation between the sibling species. These differences explain adaptation to the climatic conditions that prevail in the different ecosystems where these species live. To the best of our knowledge, this is the first time that physiological differences between the two siblings are measured by using chronobiological methods.     

Morphological studies on the Sulawesi macaques I: Phyletic analysis of body color

The body color of Sulawesi macaques was measured quantitatively and compared among the different monkeys. As a result, divergence models for extant Sulawesi macaques, withtonkeana as the starting point and fading as the sole direction of color change, were inferred as follows: (1) fading slightly on the upper half of the body—nigra, fading more on the proximal part of the body—nigrescens; (2) fading over the whole body—maura; (3) fading greatly on the legs—hecki; and (4) fading on the distal part of the body—ochreata, fading more over the whole body, including the proximal part of the body—brunnescens. The color changed progressively in the order of (1) through (4). The divergence model, excluding the position ofhecki (3), supports the speciation model ofFooden (1969). If the proto-Sulawesi macaques had a body color pattern similar to the livingnemestrina, darkening would have been necessary for the evolution of the Sulawesi macaques after their immigration, and it may have been acquired as an adaptation to the ground (forest floor) living nature of the Sulawesi macaques, together with influences deriving from the insularity and/or from the absence of predators.     

Prairie plant guilds: a multivariate analysis of prairie species based on ecological and morphological traits

An ecomorphological analysis of the tallgrass prairie of central North America divided representative species of the native grassland flora into eight guilds or groups of species with similar life-form, phenology, and ecology. The guilds, segregated by multivariate analysis, are: (1) warm-season graminoids with Kranz anatomy and the Hatch-Slack photosynthetic pathway (C4 grasses); (2) cool-season graminoids without Kranz anatomy, but with the common Calvin or C3 photosynthetic pathway (C3 grasses and sedges); (3) annuals and biennial forbs; (4) ephemeral spring forbs; (5) spring forbs; (6) summer/fall forbs; (7) legumes; and (8) woody shrubs. The study was based on 158 plant species indigenous to three upland prairie sites in northeastern Kansas. Each species was scored for 32 traits which fall into five broad categories: plant habit, leaf characteristics, stem structures, root structures, and reproductive traits, including phenology. A multivariate, detrended correspondence analysis sorted the 158 species into the eight principal groups or guilds. These groups were further supported by a cluster analysis and discriminant function analysis of the same data set. The discriminant function analysis determined that 94.3% of the species were correctly classified in their respective guilds, and that the guilds were statistically different. Results indicate that guild analysis offers a basis for detailed classification of grassland vegetation that is more ecologically focused than species composition, as the myriad of species (about 1,000 prairie species on the central plains of North America) vary in presence, cover, and importance with their individualistic distribution.Abbreviations C3= C3 photosynthesis - C4= C4 photosynthesis - LSD= least significant difference     

Colony genetic structure in the mono- and polygynous sibling species of the antsCamponotus nawai andCamponotus yamaokai: DNA fingerprint analysis

Using the ant-derived probe (pMY7), we performed DNA fingerprinting in monogynous and polygynous sibling ant speciesCamponotus nawai andCamponotus yamaokai. In monogynousC. nawai, band-sharing probabilities were low between unrelated individuals (mean 0.09), but those and relatedness estimates were consistently high between workers of the same nest (mean 0.85 and 0.74–0.83, respectively), suggesting that the queen mated once and nestmate workers are super-sisters. It also suggested monoandry: that is, that all nestmate workers shared most of the bands which were considered to have derived from a male. In polygynousC. yamaokai, band-sharing probabilities were low between queens of different populations (mean 0.13), moderate between queens of different nests in the same population (mean 0.25), but very high between queens of the same nest (within-nest means were 0.84–0.96). These results suggest that nestmate queens are genetically closely related with each other. Relatedness estimates between colony members sometimes reached 1. This might result from successive intranidal mating (inbreeding or large Wahlund effect) and adoption of new queens into the natal nests.     

Overstory vegetation and successional trends of Land Between The Lakes,USA

133 stands from the uplands of Land Between The Lakes (LBL) were sampled. Stand data were ordinated to identify clinal patterns in the overstory vegetation. A coeno-cline, accounting for 52% of the species variance, was developed from the first ordination axis. Classification of stands identified nine dominance types: Pinus echinata-Quercus spp., Q. prinus, Q. prinus-Q. alba, Q. stellata-Q. alba, Q. velutina-Q. alba, Q. alba, Q. alba-Q. rubra, Acer saccharum-Q. alba-Fagus grandifolia sadF. grandifolia-A. saccharum. Compositionally-stable (climax) and unstable (successional) stands were analyzed separately. Trajectories of unstable stands include the succession of P. echinata to Quercus-dominated communities on xeric sites and of Quercus types to more mesophytic communities (e.g. A. saccharum and F. grandifolia) onmesic sites. These shifts indicate the nature of the future climax overstory composition at LBL. The first axis DCCA ordination for climax stands accounted for 45% of the vegetation variance. Factor Analysis identified two significant suites of variables related to vegetation: soil chemistry/soil moisture and soil texture. Specific variables related to variation in the climax vegetation include soil pH, calcium and magnesium, effective soil depth, available water capacity, percent rock in the soil, slope position, aspect, elevation and distance to the opposing slope. Modal positions of species along the direct gradient ordination were similar in rank order to those derived from the indirect gradient ordination of all stands. The latter ordination represents the present forest vegetation pattern at LBL. Climax stands showed a shift in modes of Quercus spp. toward the xeric end of the gradient and increases in habitat width of mesophytic species. Following a reduction in disturbance, species appear to adjust to changes in competition and available habitat. That is, the dimensions of realized niches (i.e. habitat widths) change with succession. The climax vegetation at LBL appears to show centrifugal organization.     

Morphological and genetic relationships of the Crocidura monticola species complex (Soricidae: Crocidurinae) in Sundaland

Small Crocidurinae shrews (weight <8 g) from Southeast Asia have been poorly studied to date, mainly because of the difficulty to catch them and the concomitant paucity of reference specimens available in museums. Hence their systematics is still debated, and most small Crocidura shrews from Sundaland are assigned to the monticola species complex. Here, we report a study based on a survey of shrews caught with large pitfalls set on forest floors in Peninsular Malaysia. Morphometric analyses based on 14 skull measurements showed that these shrews tend to be larger with increasing altitude, but showed otherwise no consistent variation. When compared to museum specimens of the monticola species complex sampled in the Sundaland (total: 77 specimens), the Malay shrews tend also to be larger than those living on Kalimantan (Borneo) and Sumatra. All are, however, morphologically distinct from the other species, C. maxi, found in eastern Java and on the Lesser Sundas. Molecular analyses of a subset of these small shrews and based on a mitochondrial (cytochrome b) and a nuclear gene (Apolipoprotein B) suggest that samples from the central region of Peninsular Malaysia (Bukit Rengit and Ulu Gombak) genetically differ from other Malaysian populations (by about 7% K2P distance at the cyt b gene) and are more closely related to some samples from Sumatra and Borneo. These differences did not correlate with the altitudinal variation evidenced from the morphological analysis. Reference sequences from the terra typica of monticola and maxi (both species were originally described from Java) are however needed to determine if these unexpected genetic differences warrant additional taxonomic subdivision within the Sundaland.     

Comparing G: multivariate analysis of genetic variation in multiple populations

The additive genetic variance–covariance matrix (G) summarizes themultivariate genetic relationships among a set of traits. The geometry of Gdescribes the distribution of multivariate genetic variance, and generates geneticconstraints that bias the direction of evolution. Determining if and how the multivariategenetic variance evolves has been limited by a number of analytical challenges incomparing G-matrices. Current methods for the comparison of G typically shareseveral drawbacks: metrics that lack a direct relationship to evolutionary theory, theinability to be applied in conjunction with complex experimental designs, difficultieswith determining statistical confidence in inferred differences and an inherentlypair-wise focus. Here, we present a cohesive and general analytical framework for thecomparative analysis of G that addresses these issues, and that incorporates andextends current methods with a strong geometrical basis. We describe the application ofrandom skewers, common subspace analysis, the 4th-order genetic covariance tensor and thedecomposition of the multivariate breeders equation, all within a Bayesian framework. Weillustrate these methods using data from an artificial selection experiment on eighttraits in Drosophila serrata, where a multi-generational pedigree was availableto estimate G in each of six populations. One method, the tensor, elegantlycaptures all of the variation in genetic variance among populations, and allows theidentification of the trait combinations that differ most in genetic variance. The tensorapproach is likely to be the most generally applicable method to the comparison ofG-matrices from any sampling or experimental design.     

Near infrared spectroscopy, cluster and multivariate analysis hyphenated to thin layer chromatography for the analysis of amino acids

Summary. A method based on near-infrared spectroscopy (NIRS) was developed for the rapid and non-destructive determination and quantification of solid and dissolved amino acids. The statistical results obtained after optimisation of measurement conditions were evaluated on the basis of statistical parameters, Q-value (quality of calibrations), R², standard error of estimation (SEE), standard error of prediction (SEP), BIAS applying cluster and different multivariate analytical procedures. Experimental optimisation comprised the selection of the highest suitable optical thin-layer (0.5, 1.0, 1.5, 2.0, 2.5, 3.0 mm), sample temperature (10–30 °C), measurement option (light fibre, 0.5 mm optical thin-layer; boiling point tube; different types of cuvettes) and sample concentration in the range between 100 and 500 ppm. Applying the optimised conditions and a 115-QS Suprasil^? cuvette (V = 400 μl), the established qualitative model enabled to distinguish between different dissolved amino acids with a Q-value of 0.9555. Solid amino acids were investigated in the transflectance mode, allowing to differentiate them with a Q-value of 0.9155. For the qualitative and quantitative analysis of amino acids in complex matrices NIRS was established as a detection system directly onto the plate after prior separation on cellulose based thin-layer chromatography (TLC) sheets employing n-butanol, acetic acid and distilled water at a ratio of 8:4:2 (v/v/v) as an optimised mobile phase. Due to the prior separation step, the established calibration curve was found to be more stable than the one calculated from the dissolved amino acids. The found lower limit of detection was 0.01 mg/ml. Finally, this optimised TLC-NIRS method was successfully applied for the qualitative and quantitative analysis of L-lysine in apple juice. NIRS is shown not only to offer a fast, non-destructive detection tool but also to provide an easy-to-use alternative to more complicated detection methods such as mass spectrometry (MS) for qualitative and quantitative TLC analysis of amino acids in crude samples.     

4种红豆杉属植物遗传多样性和遗传关系的RAPD分析

采用RAPD标记研究了分属于4种红豆杉属(Taxus Linn.)植物的68个单株的遗传多样性,并采用UPGMA方法分析68个单株的遗传关系.结果表明:12条RAPD引物共扩增出109条带,其中多态性条带108条,多态性条带百分率为99.1％;平均每条引物扩增出9.1条带.南方红豆杉[T.wallichiana var.mairei (Lemée et Lévl)L.K.Fu et Nan Li.]种内的多态性条带百分率和观察等位基因数均最高;欧洲红豆杉(T.baccata Linn.)种内的有效等位基因数、Nei's基因多样度和Shannon's信息指数均最高;须弥红豆杉(T.wallichiana Zucc.)种内的各项遗传多样性指数均最低.供试4种植物的种内遗传多样度、种间遗传多样度、基因流和种间遗传分化系数分别为0.1745、0.358 6、0.401 7和0.554 5,表明55.45％的遗传变异发生在种间.南方红豆杉和须弥红豆杉遗传距离最近;曼地亚红豆杉(Taxus×media Rehd.)和须弥红豆杉的遗传距离最远.通过聚类分析可将68个单株分为3组,欧洲红豆杉的18个单株和曼地亚红豆杉的18个单株分别各自聚为1组;须弥红豆杉的16个单株和南方红豆杉的16个单株聚为1组,其中须弥红豆杉的16个单株和南方红豆杉的16个单株又各自聚为1个亚组,且南方红豆杉的雌、雄单株也分别聚在同一分支上,表明须弥红豆杉和南方红豆杉遗传关系较近,而欧洲红豆杉与其他3种植物的遗传关系较远.     

Application of a self-organizing map to select representative species in multivariate analysis: A case study determining diatom distribution patterns across France

Ecological communities consist of a large number of species. Most species are rare or have low abundance, and only a few are abundant and/or frequent. In quantitative community analysis, abundant species are commonly used to interpret patterns of habitat disturbance or ecosystem degradation. Rare species cause many difficulties in quantitative analysis by introducing noises and bulking datasets, which is worsened by the fact that large datasets suffer from difficulties of data handling. In this study we propose a method to reduce the size of large datasets by selecting the most ecologically representative species using a self organizing map (SOM) and structuring index (SI). As an example, we used diatom community data sampled at 836 sites with 941 species throughout the French hydrosystem. Out of the 941 species, 353 were selected. The selected dataset was effectively classified according to the similarities of community assemblages in the SOM map. Compared to the SOM map generated with the original dataset, the community pattern gave a very similar representation of ecological conditions of the sampling sites, displaying clear gradients of environmental factors between different clusters. Our results showed that this computational technique can be applied to preprocessing data in multivariate analysis. It could be useful for ecosystem assessment and management, helping to reduce both the list of species for identification and the size of datasets to be processed for diagnosing the ecological status of water courses.     

Relating new information to a previous vegetation classification: a case of discriminant coordinates analysis

Discriminant coordinates analysis is an adequate technique for analyzing the linear relationships between a number of new variates (i.e. environmental or functional attributes) and a set of vegetational attributes already summarized in the form of a classification. It displays the principal differences among classes in relation to the new variates considered. The procedure and its rationale are equivalent to a special case of principal components analysis.A case study on radiometer satellite data is presented. Two discriminant coordinates displayed the main differences in the seasonal dynamics of the NDVI (an index of standing green biomass) among broad phytogeo-graphic units in the Patagonia region. The first coordinate can be interpreted as an index of height and convexity of the NDVI seasonal curve. It suggests that the principal difference among regions was the total seasonal growth. The second coordinate represents a contrast that discriminated between two already detected patterns of seasonal NDVI curve.Abbreviations DC Discriminant Coordinate - NDVI Normalized Difference Vegetation Index     

Use of random amplified polymorphic DNA analysis to detect genetic variation inPyrus species

Pyrus communis L. is the most important pear species for European production. Very few cultivars satisfy standards for fruit quality and clonal fidelity; thus, accurate verification of cultivar identity for checking propagation material and patent protection is important. We evaluated the randomly amplified polymorphic DNA (RAPD) technique for its ability to identify genetic differences among standard pear (Pyrus communis L.) cultivars, William, Passa Crassana, and Conference, and three gamma-ray induced variants. To identify genotype-specific markers, we used thirty 10-mer and two 11-mer sequences, annealing temperatures from 36–45°C, 2Taq polymerases (AmpliTaq and Stoffel fragment, both from former Perkin Elmer Cetus), and 2–4 replicate amplifications. Of the 32 primers (30 from Operon Technologies, Alameda, CA, USA), very few distinguished William from Passa Crassana, and only 1 could clearly differentiate all 3 cultivars. Two primers that did not reveal polymorphisms when used singly, generated polymorphic patterns that distinguished standard from gamma-ray-treated material when used in combination. We show that RAPD analyses can discriminate pear genotypes and suggest this technique as a reliable and inexpensive method for marker-facilitated screening of propagation material and for patent protection.