Incremental lines in root cementum of human teeth —A reliable age marker?

In root cementum of teeth, alternating dark and light lines become visible in cross-sections under the light microscope. These lines bear an apparent resemblance to the annual rings of trees. Numerous studies have been done to correlate the number of cementum lines with the dental age by examining a great number of teeth of known age. Our study used a different approach. If lines in root cementum develop in an annual rhythm and are thus comparable to annual rings of trees, the same or at least a very similar number of these structures should be found in all areas of the root cementum of the same tooth. We counted cementum lines in the buccal, lingual, distal and mesial region of different sections, all from the middle third of the same root. This was repeated in eight teeth. To our surprise, we had immense difficulty in counting reproducible line numbers in the same cementum area at repeated counts. Nevertheless, the same tooth was found to differ markedly in the number of lines in different sections as well as in different regions of the same sections. These differences cannot be ascribed to variations caused by difficulties with reproducible line counting. Therefore, we are more than skeptical about the reliability of counting lines in root cementum as a method for determining the age of human teeth.     

Rainfall and the population dynamics of elephant dung‐piles in the forests of southern Ghana

Decaying dung‐piles were observed at three sites in the lowland forests of southern Ghana. Time to disappearance was inversely related to rainfall in the month of deposition. The monthly survival of each age‐class decreased with age and was inversely proportional to rainfall in the month of deposition. A simulation revealed that if elephant numbers and defaecation rates are constant, then dung density in a given month will be governed by rainfall in the two preceding months. Changes in annual rainfall and its monthly distribution in southern Ghana mean that dung‐pile densities will vary from one month to the next, and between the same months in different years, even if elephant numbers are constant. Thus dung counters must take rainfall into account. A new method of censusing elephants in Ghana is presented, and suggestions are made for improving elephant counts in central African forests.     

Record of Blue tilapia Oreochromis aureus (Steindachner, 1864) in the Eerste River catchment,Western Cape province,South Africa

Oreochromis aureus was imported from Israel into South Africa in 1959 but data on its current status in South Africa are lacking. Genomic DNA was extracted and the COI gene amplified at the South African Institute for Aquatic Biodiversity. The identity of the sequences and specimens was determined using the Barcode of Life Data Systems and GenBank. Morphological and genetic assessment demonstrated that 11 specimens collected from two farm dams in the Eerste River System, Western Cape province, were Oreochromis aureus. A MaxEnt model compiled using global distribution, rainfall and temperature data predicted that large areas of southern Africa were climatically suitable for this species, indicating considerable invasion debt in southern Africa. As a result, surveys to assess for the extent of the invasion in South Africa and eradication of existing populations, if feasible, are recommended management actions.     

The Known Distribution and Ecological Preferences of the Tick Subgenus Boophilus (Acari: Ixodidae) in Africa and Latin America

A compilation of the known distribution of Boophilus ticks in Africa and Latin America is presented, together with details on climate preferences. B. annulatus is recorded mainly in the western part of a strip from the equator to parallel 20° N. It associates with woodlands and forests (lowland rain forest and secondary grassland). This species is also present in the Mediterranean region, associated to woodland and open areas. B. decoloratus extends southern to parallel 20° N, in woodland with montane vegetation and Zambezian miombo; some records have been collected in the highveld grassland. B. geigyi is mainly collected in the western range of a stripe extending between parallels 5° N and 18° N, associated with Sudanian woodland, lowland rain forest with secondary grassland and woodland. Confirmed records of microplus in Africa are restricted to Malagasy region and south and eastern Africa, being predominant in the Zambezian miombo, deciduous forest with secondary grassland, and woodland. In Latin America, microplus is abundant in the Mesoamerican corridor to Venezuela and Colombia, and southern in Brazil and Argentina. The tick is mainly associated to the biomes of Chaco and Pampas in Argentina, the North-central moist Andes, the Atlantic forest (southern range) and the moist Meso-American vegetation (northern range). Most collections of B. annulatus and B. geigyi came from areas where winter minimum temperature is above 15 °C, maximum temperatures remain between 33 and 36 °C and maximum rainfall is recorded between June and September. B. decoloratus and African B. microplus are recorded in sites with low temperatures in May–September. Minimum temperature requirements are similar for both B. decoloratus and African B. microplus, and both are around 4 °C less than the value recorded for collections of Latin-American B. microplus. The rainfall pattern observed for decoloratus shows a minimum in May and June. The requirements of total rainfall are highest for B. microplus in Latin America, while records of African B. microplus are concentrated in areas of low rainfall between May and October, and high rainfall between November and March (low rainfall in the same period for B. decoloratus). Statistical analysis revealed the existence of populations (demes) with ecologically different requirements within each tick species. Both B. annulatus and B. decoloratus showed many different demes clearly associated to defined areas. The collections of Latin American B. microplus are very homogeneous according climate preferences and well separated from the African counterpart.     

Climatic and biogeographical associations of southern African dung beetles (Coleoptera: Scarabaeidae s. str.)

Climatic and biogeographical associations of southern African dung beetles (Scarabaeinae, Coprinae) were analysed from a collection amassed between 1971 and 1986. Endemism to Africa south of 15°S was much greater in southwesterly climates (winter rainfall, bimodal spring/autumn rainfall, arid late summer rainfall) than to the north‐east in the moist, mid‐summer rainfall region. Major biogeographical groups centred to the south‐west comprised predominantly southern African endemics, Western/Eastern Cape coast, Karoo, Karoo/Namib, northern Namibia and the south‐western Kalahari. Biogeographical groups centred on the south‐eastern highlands and the subtropical east coast (mid‐summer rainfall) also comprised predominantly southern African endemics. All other major groups centred to the north‐east in the mid‐summer rainfall region comprised predominantly species with widespread tropical biogeographical affiliations, pan‐southern Africa but centred in the east, pan‐mid‐summer rainfall region, eastern mid‐summer rainfall region, tropical east Zimbabwe/central Moçambique, subtropical/tropical game reserves (non‐ruminant dung specialists). There were cross‐climatic differences in taxonomic composition of the fauna. Within the winter rainfall region, percentage species composition of Scarabaeinae was greater whereas that of the coprine tribe, Onthophagini, was lower than within the other three climatic regions. Percentage species richness of most other tribes of Coprinae differed little between most climates but that of Scarabaeinae declined from west to east (Canthonini, Scarabaeini), east to west (Sisyphini) or to either side of the late summer rainfall region (Gymnopleurini).     

Physio-climatic classification of South Africa's woodland biome

In an effort to develop more holistic ecosystem approaches to resource assessment and management, landscapes need to be stratified into homogeneous geographic regions. These regions can then be used in a monitoring framework to develop reliable estimates of ecosystem productivity. A regional characterization of the woodland biome has been developed for South Africa, delineated by satellite imagery and using environmental data and a rigorous statistical methodology. Distribution maps of key environmental variables are analyzed by factor analysis, an iterative clustering technique and maximum likelihood classification to quantify and identify homogeneous physio-climatic units.A spatial clustering technique was used to identify regions, which are statistically different with regard to five physiographic, climatic and edaphic variables deemed important within southern African savanna woodlands. The woodland biome of South Africa at 1km resolution was successively divided. Thirty year mean monthly temperature, total plant-available water balance of soil, elevation, landscape topographic position, and landscape soil fertility were used as input classification variables.The map data were submitted to a factor analysis and varimax axis rotation. The factor analysis removes correlations from the input variables, reduces the dimensionality, and normalizes the axis measurements. A cluster analysis was performed on the three principal factor scores using a modified iterative optimization clustering procedure to determine the finest level of classes statistically permitable. Twenty-seven identified unimodal cluster signatures were then submitted to a maximum likelihood classification where the statistical probability of the GIS cell assignment is carried out to determine class membership. The final map of custom physio-climatic regions is described, and these custom regions are compared with a vegetation potential map of the woodland types identified in the South African summer rainfall zone.     

The spatial distribution of vegetation types in the Serengeti ecosystem: the influence of rainfall and topographic relief on vegetation patch characteristics

Aim The aim of this study is to introduce a structural vegetation map of the Serengeti ecosystem and, based on the map, to test the relative influences of landscape factors on the spatial heterogeneity of vegetation in the ecosystem. Location This study was conducted in the Serengeti–Maasai Mara ecosystem in northern Tanzania and southern Kenya, between 34° and 36° E longitude, and 1° and 2° S latitude. Methods The vegetation map was produced from satellite imagery using data from over 800 ground‐truthing points. Spatial characteristics of the vegetation were analysed in the resulting map using the fragstats software package. Average patch area and nearest neighbour distance (NND) were determined for grassland, shrubland and woodland vegetation types. The heterogeneity of vegetation types was estimated with Simpson’s diversity index (D). Structural equation modelling (SEM) was used to explore the relationships between the spatial characteristics of vegetation and three predictor variables: annual rainfall, coefficient of variation (CV) in annual rainfall, and topographic moisture index (TMI). Results A vegetation map is presented along with a detailed summary of the distribution of land‐cover classes and spatial heterogeneity in the ecosystem. Significant relationships were found between vegetation diversity (D) and TMI, and also between D and average rainfall. The average area of grassland patches showed significant relationships with average rainfall, with rainfall CV and with TMI. Grassland NND was positively associated with average rainfall. Woodland patch area showed a unimodal response to average rainfall and a negative linear association with TMI. Woodland NND showed a U‐shaped association with annual rainfall and a weaker positive linear association with TMI. An acceptable model that explained variation in shrubland patch characteristics could not be identified. Main conclusions The vegetation map and analysis thereof resulted in three significant causal explanatory models that demonstrate that both rainfall and topography are important contributors to the distribution of woodlands and grasslands in the Serengeti. These findings further indicate that changes in patch characteristics have a complex interaction with rainfall and with topography. Our results are concordant with recent studies suggesting that percent woody cover in African savannas receiving less than c. 650 mm year^?1 is bounded by average annual rainfall.     

A Temporally Explicit Production Efficiency Model for Fuel Load Allocation in Southern Africa

Abstract We present a regional fuel load model (1 km² spatial resolution) applied in the southern African savanna region. The model is based on a patch-scale production efficiency model (PEM) scaled up to the regional level using empirical relationships between patch-scale behavior and multi-source remote sensing data (spatio-temporal variability of vegetation and climatic variables). The model requires the spatial distribution of woody vegetation cover, which is used to determine separate respiration rates for tree and grass. Net primary production, grass and tree leaf death, and herbivory are also taken into account in this mechanistic modeling approach. The fuel load model has been calibrated and validated from independent measurements taken from savanna vegetation in Africa southward from the equator. A sensitivity analysis on the effect of climate variables (incoming radiation, air temperature, and precipitation) has been conducted to demonstrate the strong role that water availability has in determining productivity and subsequent fuel load over the southern African region. The model performance has been tested in four different areas representative of a regional increasing rainfall gradient—Etosha National Park, Namibia, Mongu and Kasama, Zambia, as well as in Kruger National Park, South Africa. Within each area, we analyze model output from three different magnitudes of canopy coverage (<5, 30, and 50%). We find that fuel load ranges predicted by the model are globally in agreement with field measurements for the same year. High rainfall sustains green herbaceous production late in the dry season and delays tree leaf litter production. Effect of water on production varies across the rainfall gradient with delayed start of green material production in more arid regions.     

Evaluation of Preparation, Staining and Microscopic Techniques for Counting Incremental Lines in Cementum of Human Teeth

Apposition of cementum occurs in phases resulting in two types of layers with different optical and staining properties that can be observed by light microscopy. Narrow, dark staining incremental lines are separated by wider bands of pale staining cementum. The distance from one line to the next represents a yearly increment deposit of cementum in many mammals, and counting these lines has been used routinely to estimate the age of the animals. Incremental lines in cementum have also been observed in sections of human teeth, and the object of the present investigation was to examine a number of methods for preparing and staining them for counting. Longitudinal and transverse sections, either ground or decalcified, were cut from formalin fixed human dental roots, paraffin embedded or frozen, and stained using several techniques. The cementum was investigated using conventional light, fluorescence, polarized light, confocal laser scanning, interference contrast, phase contrast, and scanning electron microscopy. Incremental lines in the cementum could be observed in ground sections and, following decalcification, in both frozen and paraffin embedded sections. Toluidine blue, cresyl violet, hematoxylin, or periodic acid Schiff (PAS) stained incremental lines allowing differentiation by conventional light microscopy. Contrast was best using fluorescence microscopy and excitation by green light since the stained cemental bands, but not the incremental lines, fluoresced after staining with cresyl violet, PAS or hematoxylin and eosin. The results with other microscopic techniques were unsatisfactory. Since incremental lines are not destroyed by acids and stain differently than the remaining cementum, it is likely that they possess an organic structure which differs from the cementum. Incremental lines in human dental cementum could be observed best using decalcified sections stained with cresyl violet excited by green light.     

Relationship between west African rainfall and the survival of central European Sand Martins Riparia riparia

The aim of this study was to investigate the effects of Sahelian rainfall on the central European Sand Martin Riparia riparia population for the period 1986–1992. The studied population breeds along the River Tisza in Hungary and is one of the largest in central Europe. The changes in the population size did not show a significant relationship to Sahelian rainfall, but a large decrease in 1991 coincided with the drought in three Sahelian areas. The survival rates of adults had a significant relationship to the rainfall of the southern Sahel but not to the other two studied areas (northern Sahel, central Sudan). The model selection included this relationship and raised the possibility of predicting the adult survival rate in autumn for the following wintering season, using African rainfall data. The analysis showed a significant difference in the survival rates between the sexes, with that of the female being lower. Differences in the changes of the population size and adult survival rate showed the importance of the recruitment of adults, and this may depend mainly on the survival of juveniles.     

Climate variability and change over southern Africa: impacts and challenges

In this paper, the influence of climate variability and change on the environment was studied over southern Africa using ground-based and remotely sensed data. A time series analysis of rainfall and temperature anomalies indicated that there was a high rainfall and temperature variability in the region. The influence of global teleconnections on rainfall patterns over southern Africa showed that in some areas there was a spatial variation in their strength, increasing from west to east. Maps of NDVI, from 1982 to 2004, showed that changes in vegetation cover were more apparent during the dry season than during the wet season. The study also revealed that climate variability and change are linked to decreasing rainfall and hence, decreasing regional water resources and biodiversity and increasing environmental degradation. With the regional population expected increase, this depletion of resources poses the greatest regional environmental challenge to humankind.     

Age determination of the African buffalo, Syncerus coffer (Sparrman) in Zimbabwe

Age determination methods using teeth are described for African buffalo in Matusadona National Park, Kariba, Zimbabwe. Tooth eruption stages and age classes for sub-adult animals were established by reference to a seasonal breeding peak and known dates of death. Teeth in adult animals were allocated age classes based on wear using measurements of crown height and by reference to previously published material. Layering in the dental cement indicated the deposition of one cementum line per annum and line counts were used to assign chronological ages to individual animals. Regressions of wear on age were confirmed by independent counts of cementum lines using a predictive wear model.     

Living with the genetic signature of Miocene induced change: evidence from the phylogeographic structure of the endemic angulate tortoise Chersina angulata

The phylogeographic structure of the monotypic endemic southern African angulate tortoise Chersina angulata was investigated throughout its distribution with the use of partial sequences from three mtDNA loci (COI, cyt b and ND4). Phylogeographic and phylogenetic structuring obtained for the three mtDNA markers were highly congruent and suggested the presence of two genetically distinct, reciprocally monophyletic evolutionary lineages. Group one contained two subclades with haplotypes from the north-western Cape and south-western Cape, respectively, while haplotypes from the southern Cape comprised group two. The two major clades were separated by nine and eight mutational steps for COI and ND4, respectively. Of the three mtDNA gene regions examined, the ND4 partial sequence contained the most phylogenetic signal. Haplotype diversity was generally low and we recovered 34 haplotypes for the 125 animals sequenced for the ND4 subunit. Nested clade analyses performed on the variable ND4 partial sequences suggested the presence of two major refugial areas for this species. The demographic history of the taxon was characterised by range expansion and prolonged historical fragmentation. Divergence time estimates suggest that the temporal and spatial distribution of the taxon was sculpted by changes in temperature and rainfall patterns since the late Miocene. Corroborative evidence from other reptiles is also suggestive of a late Miocene divergence, indicating that this was a major epoch for cladogenesis in southern Africa. Apart from the genetic differences between the two major clades, we also note morphometric and behavioural differences, alluding to the presence of two putative taxa nested within C. angulata.     

Assessing the frequency and drivers of early‐greening in broad‐leaved woodlands along a latitudinal gradient in southern Africa

Savannas are the only deciduous system where new leaf flush pre‐empts the onset of suitable conditions for growth, a phenological phenomenon known as early‐greening. Limited understanding of the frequency and drivers of the occurrence of early‐greening in southern African savanna trees exists. We aimed to estimate the frequency of early‐greening events across southern Africa and investigated potential environmental drivers of green‐up. We selected and compared seven broad‐leaved woodland sites where Burkea africana was a dominant species using remotely sensed data along a latitudinal gradient from South Africa to Zambia. Normalized difference vegetation index (NDVI) values were extracted from the Moderate Resolution Imaging Spectroradiometer (MODIS) satellite imagery at each site from January 2002 to June 2014. Using an austral year (July 1st–June 30th), early‐greening was recorded if the green‐up start date occurred prior to the onset date of seasonal rainfall. A latitudinal gradient of early‐green‐up was detected across southern Africa (R² = 0.74) with the two most northerly (Zambian) sites showing the earliest and most consistent green‐up start dates (3 October ± 5.34 days). A strong latitudinal gradient was observed between the variability in the amount of rainfall in the first 6 months of green‐up and the green‐up start dates across southern Africa (R² = 0.92). Photoperiod appeared to play a role in areas where the onset of rainfall commenced late into the austral year. Mean maximum temperatures recorded 10 days prior to green‐up start dates suggested a potential threshold of about 35°C, which could drive early‐greening in the absence of rainfall. Correlations between the proportion of early‐greening years and the above mentioned environmental factors indicated that rainfall variability had the strongest influence over the observed phenological gradient (R² = 0.96). Understanding early‐greening in complex savanna systems is a vital step in furthering predictive phenological models under changing climatic conditions.     

Incremental lines in prehistoric cremated teeth. A technical note

Incremental lines have been examined in cementum of modern human teeth. Their number is related to age. These lines are demonstrated in cremated teeth too and offer an additional feature for age determination in cremations.     

Local variation in embryo development rate in annual fish

Extreme asynchrony in embryo development, a typical feature of annual killifish living in temporary pools, represents a bet‐hedging strategy to cope with unpredictable rainfall. African annual killifish are distributed across a large precipitation gradient, raising the potential for local adaptation in the degree of developmental asynchrony (e.g. higher in arid areas, lower in humid areas). Eight populations of two sister species, Nothobranchius furzeri and Nothobranchius kadleci, from sites along the rainfall gradient were tested and compared for asynchrony and duration of embryo development. Degree of asynchrony and mean duration of embryo development did not differ across the examined range. Despite generally high developmental variability, fish from more arid regions (where rain is more erratic) produced a significantly higher proportion of short‐developing embryos. Comparable developmental asynchrony, regardless of precipitation level, suggests that all populations tested need to cope with some level of rainfall stochasticity. By producing more short‐developing embryos, however, fish in more arid areas with relatively more erratic rains are better adapted to very short pool durations and are more likely to produce multiple offspring generations within a single rainy season.     

Influence of rainfall seasonality on African lowland vegetation during the Late Quaternary: pollen evidence from Lake Masoko, Tanzania

Aim  To determine if changes in the key bioclimatic parameters associated with rainfall seasonality can be quantified from fossil sequences and to distinguish them from changes in the total annual rainfall.
Location  Lake Masoko, southern Tanzania (9°20' S, 33°45' E, 840 m a.s.l.).
Methods  Fossil pollen was extracted from a long and well-dated sedimentary sequence spanning the period 45,000–4400 cal. yr bp . The modern habitat, geographical distribution and climatic range (mean annual rainfall and temperature, and length of the dry season) of selected East African plants were used to infer past rainfall attributes for the most characteristic fossil pollen taxa identified from the sediments of Lake Masoko.
Results  In the Masoko pollen sequence it has been possible to identify changes in the length/severity of the dry season during the last 45,000 cal. yr bp , which are interpreted to reflect shifts in the mean position of the Intertropical Convergence Zone (ITCZ) over the southern tropics. We suggest that this bioclimatic parameter has been the main driver of the vegetation dynamics in this area. The major inferred change occurred at the Younger Dryas–Holocene transition c . 11,800 cal. yr bp , when semi-deciduous forest disappeared, being replaced in the lake catchment by woodland, which persists to the present day in spite of locally high rainfall.
Main conclusions  In tropical regions under the influence of the ITCZ, the position and strength of which determine the distribution of rainfall through the year, more attention must be paid to the impact of the length and intensity of the dry season on the modern and past distribution and dynamics of the vegetation. This climatic parameter is as important as the total annual amount of rainfall, and probably one of the most relevant in lowland areas.     

Avian diversity and endemism in Namibia: patterns from the Southern African Bird Atlas Project

Namibia supports a highly diverse avifauna of 644 species, including over 90 species endemic to the southern African subregion and 13 species endemic to the country. Patterns of species diversity in relation to protected areas and habitat types were analysed using data from the Southern African Bird Atlas Project. A modified Shannon index appropriate for atlas data was used to derive an index of diversity for all species, wetland, terrestrial, threatened, and regional endemic species. Species richness for Namibian endemics was mapped. Overall species diversity is highest in the northeast of Namibia where wetland and riparian habitats coincide. Both wetland and terrestrial species show highest diversity in this area. The greatest diversity of southern African endemics falls within the Savanna-Karoo systems. Several key areas are identified for red data species, including the Caprivi Strip, Kunene and Orange Rivers, coastal wetlands and ephemeral river mouths and pans. This highlights the pressures operating on wetland and riparian habitats in arid environments. Concentrations of Namibian endemics are found in the northwestern (Kaoko) escarpment of the country. Although much of the area of high diversity of wetland, terrestrial and red data species falls within protected areas, national and regional endemics are poorly represented within national parks.     

Plant Species Diversity in the Southern Part of the Taï National Park (Côte d’Ivoire)

Plant species diversity is surveyed in the southern part of the Taï National Park (TNP), Côte d’Ivoire. This park is the largest remaining tract of pristine forest in the West African rainforest biodiversity hotspot. Plant assemblages and environment factors were surveyed in 39 temporary 625-m² plots within three areas. The species list was completed thanks to itinerant prospections. TWINSPAN classification and detrended correspondence analysis were applied to the 39 relevés. We recorded a total of 916 plant species, including 169 West African endemics, that rises the floristic richness of TNP in 1233 species. Most plant species recorded were Guineo-Congolian species (90.9%) among which 8% were ‘Sassandrian species’, i.e. endemics of the extreme southwest Côte d’Ivoire. Eight of these endemics were exclusive of the southern part of TNP. The forest is very species-rich, particularly in Rubiaceae, Leguminosae and Euphorbiaceae. Most of the sampled species (59.5%) were erect phanerophytes with a dbh≤10 cm. We distinguished 7 plant community types, mainly determined by geomorphology and disturbance history. Lowland forests were typical dense evergreen forests with different degrees of maturity related to historical human impact. Inselbergs and swampy depressions provide an original azonal vegetation. We conclude that the southern part of TNP contributes significantly to the regional biodiversity hotspot since it includes the last remnants of primary evergreen rainforest and contains species assemblages from both higher rainfall biomes on moist soils derived from schist parent material and lower rainfall biomes on inselberg slopes and top. As anthropogenic disturbance clearly reduces biodiversity, these last remnants should be integrally protected.