Governance of genetic biocontrol technologies for invasive fish

The modification of living agents for biological control can be collectively regarded as genetic biocontrol (GBC). Applications to invasive fish are an area of significant work in GBC, employing a diversity of techniques. Some of these techniques are governed by particular legislation, policy or treaty, (e.g., transgenesis), while others deliver agents with similar properties with minimal regulation. Together, this heterogeneity of governance and biology creates a number of challenges for effective use of GBC. In some cases, there are gaps and inconsistencies that pose real threats to biodiversity, and the long term sustainability of oversight arrangements as they currently stand is questionable. Researchers and would-be users of GBC for invasive fish must proactively engage with a variety of stakeholders to improve governance (in fish and other taxa), which we contend may include reconfiguration of relevant national governance systems, meaningful stakeholder dialogue and the creation of a new international treaty dedicated to biological control.     

U.S. regulatory framework for genetic biocontrol of invasive fish

This paper provides an overview of the U.S. regulatory framework governing genetic biocontrol efforts for invasive fish. Genetic biocontrol refers to the intentional release of genetically modified organisms (GMOs) into the environment to control a target population of a non-native species. The terms “genetically modified” and “genetically engineered” are often used interchangeably, despite the scientific distinctions. A GMO is an organism that has had its genetic material altered or modified by humans through any method, including conventional breeding. Genetic engineering, as defined by the Food and Drug Administration (FDA), is the use of recombinant DNA techniques to introduce new characteristics or traits into an organism. GE organisms are therefore a subset of GMOs. As this paper will discuss, existing laws focus on GE organisms raising significant questions as to whether organisms modified without utilizing rDNA techniques fall within the jurisdiction of any federal agency. Under the 1986 Coordinated Framework for Regulation of Biotechnology, three federal agencies have primary responsibility over biotechnology—the Environmental Protection Agency (EPA), the U.S. Department of Agriculture, and the FDA. Because the EPA has exempted biological control agents from regulation as pesticides and no fish species are currently considered plant pests, the FDA is the agency responsible for approving the use of genetically engineered fish for biocontrol. FDA regulates genetically engineered animals through its New Animal Drug Application (NADA) process. The NADA process presents several challenges to effective and transparent regulation of genetic biocontrol, including the FDA’s focus on drug safety, secrecy provisions potentially limiting disclosure of the results of environmental reviews, and the secondary role of the Fish and Wildlife Service, the federal agency with the most experience with invasive species management. In addition, relying on the NADA process creates a significant regulatory gap as NADA approval is only required for GE organisms. The regulatory framework for GMOs created for genetic biocontrol without rDNA technology is unclear and primary responsibility may fall to the states. Given its extensive experience with hatcheries, invasive fish species control, and environmental reviews, the Fish and Wildlife Service (FWS) is the more appropriate agency to review applications for genetic biocontrol. Efforts should be undertaken now, while genetic biocontrol is still in the theoretical stages, to increase the role of the FWS in the permitting process either through formal regulations or more informal mechanisms such as memorandum of understanding.     

Development and application of biological technologies in fish genetic breeding

Fish genetic breeding is a process that remolds heritable traits to obtain neotype and improved varieties.For the purpose of genetic improvement,researchers can select for desirable genetic traits,integrate a suite of traits from different donors,or alter the innate genetic traits of a species.These improved varieties have,in many cases,facilitated the development of the aquaculture industry by lowering costs and increasing both quality and yield.In this review,we present the pertinent literatures and summarize the biological bases and application of selection breeding technologies(containing traditional selective breeding,molecular marker-assisted breeding,genome-wide selective breeding and breeding by controlling single-sex groups),integration breeding technologies(containing cross breeding,nuclear transplantation,germline stem cells and germ cells transplantation,artificial gynogenesis,artificial androgenesis and polyploid breeding)and modification breeding technologies(represented by transgenic breeding)in fish genetic breeding.Additionally,we discuss the progress our laboratory has made in the field of chromosomal ploidy breeding of fish,including distant hybridization,gynogenesis,and androgenesis.Finally,we systematically summarize the research status and known problems associated with each technology.     

Biotreatment technologies for stormwater harvesting: critical perspectives

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Physicochemical perspectives on DNA microarray and biosensor technologies

Detection and sequence-identification of nucleic acid molecules is often performed by binding, or hybridization, of specimen "target" strands to immobilized, complementary "probe" strands. A familiar example is provided by DNA microarrays used to carry out thousands of solid-phase hybridization reactions simultaneously to determine gene expression patterns or to identify genotypes. The underlying molecular process, namely sequence-specific recognition between complementary probe and target molecules, is fairly well understood in bulk solution. However, this knowledge proves insufficient to adequately understand solid-phase hybridization. For example, equilibrium binding constants for solid-phase hybridization can differ by many orders of magnitude relative to solution values. Kinetics of probe-target binding are affected. Surface interactions, electrostatics and polymer phenomena manifest themselves in ways not experienced by hybridizing strands in bulk solution. The emerging fundamental understanding provides important insights into application of DNA microarray and biosensor technologies.     

Melding ecology, classical weed biocontrol, and plant microbial ecology can inform improved practices in controlling invasive plant species

Early research leading to the successful biological control of invasive species such as Opuntia spp., and Hypericum perforatum set examples and provided data useful for research programs that would follow. However, this early work failed to become established as a source of applicable principles for later workers in weed biocontrol. Recently, retrospective and parallel studies have been suggested as a means to reengage with earlier work to derive useful ideas and data to enhance future programs in weed biocontrol. Parallel studies by workers in plant community ecology on the nature of feedback elicited by plant species in their invaded and native range have shown the importance of soil microbial communities in effecting feedback. Retrospective reexamination of previous studies would likely provide clues to other insect–plant pathogen interactions in addition to those described by the author and others. The effects of invasive species in profoundly altering soil microbial communities point to the need for further studies on key microbial species contributing to or driving the impact of biocontrol. These collective data suggest that the desired goal of selecting for and utilizing stronger biocontrol agents to reduce nontarget effects and to increase the impact of biological control programs would be best served by prerelease studies that assess the propensity of a candidate agent for direct or indirect interaction with other agents. This could be assessed through the use of survival analysis. Overall, parallel empirical and retrospective studies should be a necessary part of how biological control is practiced.     

Phylogenetic perspectives on reef fish functional traits

Functional traits have been fundamental to the evolution and diversification of entire fish lineages on coral reefs. Yet their relationship with the processes promoting speciation, extinction and the filtering of local species pools remains unclear. We review the current literature exploring the evolution of diet, body size, water column use and geographic range size in reef‐associated fishes. Using published and new data, we mapped functional traits on to published phylogenetic trees to uncover evolutionary patterns that have led to the current functional diversity of fishes on coral reefs. When examining reconstructed patterns for diet and feeding mode, we found examples of independent transitions to planktivory across different reef fish families. Such transitions and associated morphological alterations may represent cases in which ecological opportunity for the exploitation of different resources drives speciation and adaptation. In terms of body size, reconstructions showed that both large and small sizes appear multiple times within clades of mid‐sized fishes and that extreme body sizes have arisen mostly in the last 10 million years (Myr). The reconstruction of range size revealed many cases of disparate range sizes among sister species. Such range size disparity highlights potential vicariant processes through isolation in peripheral locations. When accounting for peripheral speciation processes in sister pairs, we found a significant relationship between labrid range size and lineage age. The diversity and evolution of traits within lineages is influenced by trait–environment interactions as well as by species and trait–trait interactions, where the presence of a given trait may trigger the development of related traits or behaviours. Our effort to assess the evolution of functional diversity across reef fish clades adds to the burgeoning research focusing on the evolutionary and ecological roles of functional traits. We argue that the combination of a phylogenetic and a functional approach will improve the understanding of the mechanisms of species assembly in extraordinarily rich coral reef communities.     

Melding ecology,classical weed biocontrol,and plant microbial ecology can inform improved practices in controlling invasive plant species

Early research leading to the successful biological control of invasive species such as Opuntia spp., and Hypericum perforatum set examples and provided data useful for research programs that would follow. However, this early work failed to become established as a source of applicable principles for later workers in weed biocontrol. Recently, retrospective and parallel studies have been suggested as a means to reengage with earlier work to derive useful ideas and data to enhance future programs in weed biocontrol. Parallel studies by workers in plant community ecology on the nature of feedback elicited by plant species in their invaded and native range have shown the importance of soil microbial communities in effecting feedback. Retrospective reexamination of previous studies would likely provide clues to other insect–plant pathogen interactions in addition to those described by the author and others. The effects of invasive species in profoundly altering soil microbial communities point to the need for further studies on key microbial species contributing to or driving the impact of biocontrol. These collective data suggest that the desired goal of selecting for and utilizing stronger biocontrol agents to reduce nontarget effects and to increase the impact of biological control programs would be best served by prerelease studies that assess the propensity of a candidate agent for direct or indirect interaction with other agents. This could be assessed through the use of survival analysis. Overall, parallel empirical and retrospective studies should be a necessary part of how biological control is practiced.     

The technologies for genetic transformation of cereals

In this review, the analysis of the most widely used technologies for genetic transformation of cereals is presented. The required conditions for transformation, regeneration, and testing of cereal crops are discussed, and a new Agrobacterium tumefaciens-mediated transformation approach is presented. This review can be useful for genetic engineers, biotechnologists, and other specialists involved in the production or studies of transgenic plants.     

Prospects for using genetic transformation for improved SIT and new biocontrol methods

The genetic manipulation of non-drosophilid insect species is possible by the creation of recombinant DNA constructs that can be integrated into host genomes by several transposon-based vector systems. This technology will allow the development and testing of a variety of systems that can improve existing biological control methods, and the development of new highly efficient methods. For programs such as sterile insect technique (SIT), transgenic strains may include fluorescent protein marker genes for detection of released insects, and conditional gene expression systems that will result in male sterility and female lethality for genetic sexing. Conditional expression systems include the yeast GAL4 system and the bacterial Tet-off and Tet-on systems that can, respectively, negatively or positively regulate expression of genes for lethality or sterility depending on a dietary source of tetracycline. Importantly, strains for male sterility must also incorporate an effective system for genetic sexing, since typically, surviving females would remain fertile. Models for the use of these expression systems and associated genetic material come from studies in Drosophila and, while many of these systems should be transferable to other insects, continued research will be necessary in insects of interest to clone genes, optimize germ-line transformation, and perform vector stability studies and risk assessment for their release as transgenic strains.     

Molecular genetic perspectives on avian brood parasitism

Advances in molecular genetic techniques have provided new approachesfor addressing evolutionary questions about brood parasiticbirds. We review recent studies that apply genetic data to thesystematics, population biology, and social systems of avianbrood parasites and suggest directions for future research.Recent molecular systematics studies indicate that obligatebrood parasitism has evolved independently in seven differentavian lineages, a tally that has increased by one in cuckoos(Cuculiformes) and decreased by one in passeriforms (Passeriformes)as compared to conventional taxonomy. Genetic parentage analysessuggest that brood parasitic birds are less promiscuous thanmight be expected given their lack of nesting and parental carebehavior. Host-specificity in brood parasites, which has importantimplications for host-parasite coevolution, has been evaluatedusing both population genetic and parentage analyses. Femalelineages are faithful to particular host species over evolutionarilysignificant time scales in both common cuckoos (Cuculus canorus)and indigobirds (Vidua spp.), but differences in the host-specificityof male parasites has resulted in different patterns of diversificationin these two lineages. Future research on brood parasitism willbenefit from the availability of comprehensive molecular phylogeniesfor brood parasites and their hosts and from advances in functionalgenomics.     

Two complementary perspectives on inter-individual genetic distance

This paper examines population structure through the prism of pairwise genetic distances. Two complementary perspectives, framed as two simple questions, are explored: Q1: What is the probability that a random pair of individuals from the same local population is more genetically dissimilar than a random pair from two distinct populations? Q2: On average, how genetically different are two individuals from the same local population, in comparison with two individuals chosen from any two distinct populations? Models are developed to provide quantitative answers for the two questions, given allele frequencies across any number of markers from two diploid populations. The probability from Q1 is shown to drop to zero with increasing number of genetic markers even for very closely-related populations and rare alleles. The average genetic dissimilarity of two individuals from distinct populations diverges from the average dissimilarity of two individuals from the same population by a percentage dependent on estimates of population differentiation. This perspective also suggests a measure of population distance based on the intuitive notion of pairwise genetic distance, along with a simple method of estimation. Results from recent empirical research on inter-individual genetic distance in human populations are analyzed in the context of the theoretical framework.     

New perspectives for the elucidation of genetic disorders

For almost 15 years, genome research has focused on the search for major risk factors in common diseases, with disappointing results. Only recently, whole-genome association studies have begun to deliver because of the introduction of high-density single-nucleotide-polymorphism arrays and massive enlargement of cohort sizes, but most of the risk factors detected account for only a small proportion of the total genetic risk, and their diagnostic value is negligible. There is reason to believe that the complexity of many "multifactorial" disorders is primarily due to genetic heterogeneity, with defects of different genes causing the same disease. Moreover, de novo copy-number variation has been identified as a major cause of mental retardation and other complex disorders, suggesting that new mutations are an important, previously overlooked factor in the etiology of complex diseases. These observations support the notion that research into the previously neglected monogenic disorders should become a priority of genome research. Because of the introduction of novel high-throughput, low-cost sequencing methods, sequencing and genotyping will soon converge, with far-reaching implications for the elucidation of genetic disease and health care.     

Review paper on current technologies for decolourisation of textile wastewaters: perspectives for anaerobic biotechnology

Dyes are natural and xenobiotic compounds that make the world more beautiful through coloured substances. However, the release of coloured wastewaters represents a serious environmental problem and a public health concern. Colour removal, especially from textile wastewaters, has been a big challenge over the last decades, and up to now there is no single and economically attractive treatment that can effectively decolourise dyes. In the passed years, notable achievements were made in the use of biotechnological applications to textile wastewaters not only for colour removal but also for the complete mineralization of dyes. Different microorganisms such as aerobic and anaerobic bacteria, fungi and actinomycetes have been found to catalyse dye decolourisation. Moreover, promising results were obtained in accelerating dye decolourisation by adding mediating compounds and/or changing process conditions to high temperatures. This paper provides a critical review on the current technologies available for decolourisation of textile wastewaters and it suggests effective and economically attractive alternatives.     

Introduction: new technologies for genetic and newborn screening

Screening newborn infants for inherited disorders has been effective in preventing mental retardation, growth failure, and death from several metabolic disorders for more than two decades. Technical advances have provided more screening tools for both genetic and nongenetic conditions, and in the coming decades these techniques will be used not only to screen newborns but to assess genetic risks in entire populations. The financial, legal, and ethical issues which these activities raise must influence the development of public policies in order to reap the benefits promised. The conference published here was designed to address these issues for health care practitioners, health policy planners, and public health professionals.     

Strategies and perspectives for genetic improvement of wine yeasts

Recent developments in expression profile and proteomic techniques illustrated that the main oenological traits of wine yeasts are complex and influenced by several genes, each of them identified as absolutely essential. Only for monogenic properties the genetic improvement programmes of wine yeasts can be performed by alteration of individual genes. Ideally the most productive way of improving the whole-cell biocatalysts is by evolution of the entire cell genome. In this article we briefly review the main genetic improvement techniques applied in new and optimised wine strains construction, paying particular attention to blind and whole genome strategies, such as the sexual recombination and genome shuffling.