The territorial system of the kob antelope (Kobus kob kob) in the Comoé National Park, Côte d'Ivoire

The territorial system of kob antelopes in the Comoé National Park, Côte d'Ivoire, was studied from March 1993 until April 1997. Whereas size and shape of territories remained constant between 1993 and 1994, the number of territories decreased from 1994 onwards. A decline of the population density probably led to the decline in territory numbers and also to variations in size and shape of the remaining territories. The decline of kob numbers is the result of heavy poaching in the study area. Whereas a lekking system was present in the study area prior to 1975 when the population density was approximately 14.4 kobs/km², males switched to the resource defence territorial system present today after the population density decreased to 12.5/km² in 1993 and finally to 2.3/km² in 1997. Compared to other research areas with higher population densities, territories in the Comoé National Park are larger, almost all adult males are capable to defend a territory, fights over territories are rare and loss of territory tenureship is almost exclusively due to the death of the territorial male. We suggest that those differences can all be related to the low population density in the study area.     

Spatial and temporal habitat use of kob antelopes (Kobus kob kob, Erxleben 1777) in the Comoé National Park, Ivory Coast as revealed by radio tracking

Spatial and temporal habitat use of kob antelopes (Kobus kob kob) have been investigated in the Comoé National Park (Ivory Coast, West Africa) by use of radio telemetry. A total of 23 kob were equipped with radio collars and radio tracked for up to 15 months. Home ranges of males were smaller and those of females larger than expected from theoretical models. Adult males used smaller areas than adult females and did not show seasonal home range shifts. Daily distances travelled did not differ between sexes. Kob walked less during the night than by day and covered shorter distances in the wet season. Whereas an increase in home range overlap between females resulted in higher rates of association among individuals, association of adults of mixed sexes was not correlated with the degree of home range overlap. Territorial behaviour of males and predator avoidance by females are suggested to explain the sex‐specific differences in home range size of adults and the deviation from the predicted sizes. Predator avoidance is presumed as the main reason for the reduced walking distances at night as well as in the wet season. Reproductive behaviour and feeding ecology are assumed to determine the degree of association of conspecifics.     

Hybridization between subspecies of waterbuck (Kobus ellipsiprymnus) in zones of overlap with limited introgression

Two subspecies of waterbuck (Kobus ellipsiprymnus), common (Kobus ellipsiprymnus ellipsiprymnus) and defassa (Kobus ellipsiprymnus defassa), are recognized based on differences in rump pattern, coat colour and geographical distribution. These forms are parapatrically distributed with an area of range overlap in East Africa, where phenotypically intermediate populations occur. Variation in 478 bp of the mitochondrial DNA control region and 14 polymorphic microsatellite loci were used to describe the genetic structure and phylogeographical pattern of the species, and to assess if the intermediate populations are the results of hybridization. In total, 186 individuals from 11 localities were analysed. A high degree of genetic differentiation was found between subspecies, although this was most evident from the microsatellite data. Hybridization was suggested in the phenotypically and geographically intermediate Nairobi NP population in Kenya. A neighbour-joining (NJ) tree based on microsatellite population genetic distances grouped Nairobi between the common and defassa populations, and a Bayesian analysis clearly showed introgression. Individuals sampled in Samburu NP, Kenya, had a common waterbuck phenotype, but introgression was suggested by both markers. Although a high degree of maternal defassa input was indicated from the sequence data, the Samburu population grouped with the common waterbuck in the microsatellite population genetic distance tree, with high support. Analyses of linkage disequilibrium and maximum-likelihood estimates of genetic drift suggested that admixture between subspecies is a recent event. The fact that introgression is limited between subspecies could be caused by chromosomal differences, hindering gene flow between common and defassa waterbuck.     

Recent introgressive hybridization revealed by exclusive mtDNA transfer from Oreochromis leucostictus (Trewavas, 1933) to Oreochromis niloticus (Linnaeus, 1758) in Lake Baringo, Kenya

Nuclear DNA and mtDNA polymorphisms were surveyed in various species of East African Oreochromis . In Lake Baringo, where only Oreochromis niloticus baringoensis is present, alien mtDNA haplotypes were observed, apparently the result of introgressive hybridization with Oreochromis leucostictus . This introgression is not accompanied by any substantial or recorded transfer of nuclear genes into O. n. baringoensis .     

Bayesian analysis of hybridization and introgression between the endangered european mink (Mustela lutreola) and the polecat (Mustela putorius)

Human-mediated global change will probably increase the rates of natural hybridization and genetic introgression between closely related species, and this will have major implications for conservation of the taxa involved. In this study, we analyse both mitochondrial and nuclear data to characterize ongoing hybridization and genetic introgression between two sympatric sister species of mustelids, the endangered European mink (Mustela lutreola) and the more abundant polecat (M. putorius). A total of 317 European mink, 114 polecats and 15 putative hybrid individuals were collected from different localities in Europe and genotyped with 13 microsatellite nuclear markers. Recently developed Bayesian methods for assigning individuals to populations and identifying admixture proportions were applied to the genetic data. To identify the direction of hybridization, we additionally sequenced mtDNA and Y chromosomes from 78 individuals and 29 males respectively. We found that both hybridization and genetic introgression occurred at low levels (3% and 0.9% respectively) and indicated that hybridization is asymmetric, as only pure polecat males mate with pure European mink females. Furthermore, backcrossing and genetic introgression was detected only from female first-generation (F1) hybrids of European mink to polecats. This latter result implies that Haldane's rule may apply. Our results suggest that hybridization and genetic introgression between the two species should be considered a rather uncommon event. However, the current low densities of European mink might be changing this trend.     

Demography of a West African kob (Kobus kob kob) population

The kob (Kobus kob kob) population studied in the Comoé National Park, Ivory Coast, suffered unsustainable losses to poaching before and during the investigation. This in turn did not only lead to low densities but also changed the population composition, resulting in a strong female bias in all age classes except juveniles. The relative rarity of adult males probably had negative effects on the population recruitment. Although mating occurred throughout the year and birth intervals were short, at least in some females, annual birth‐rate was low compared to earlier studies in the same area. Effective conservation measures are urgently needed to ensure the future existence of the studied population.     

Phylogeography and population structure of the saker falcon (Falco cherrug) and the influence of hybridization: mitochondrial and microsatellite data

Microsatellite as well as sequence analysis of the mitochondrial control region were applied to infer phylogeography and population genetic structure of the saker falcon (Falco cherrug). Furthermore, we compared the patterns of mitochondrial haplotypes with the variation of microsatellite alleles among the species of the hierofalcon complex (F. cherrug, Falco rusticolus, Falco biarmicus, Falco jugger) to test hypotheses on population history. Historical samples from museum specimens of F. cherrug were analysed together with samples from contemporary populations to investigate possible influences of hybrid falcons escaped from falconry on the genetic composition. In the mitochondrial DNA analysis, none of the four species represents a monophyletic group. Moreover, there are no clearly defined groups of haplotypes corresponding to taxonomic entities. In the microsatellite analysis most of the variation is shared between species and no clear differentiation by private alleles is found. Yet, with a Bayesian clustering method based on allele frequencies, a differentiation of F. cherrug, F. rusticolus and two geographic groups of F. biarmicus was detected. Results from both nuclear and mitochondrial markers are compatible with the previously postulated 'Out of Africa' hypothesis assuming an African origin of the hierofalcons. From an ancestral African population, F. cherrug, F. rusticolus and F. jugger split off in separate waves of immigration into Eurasia and South Asia. A combination of evolutionary processes, including incomplete lineage sorting as well as hybridization, may be responsible for the currently observed genetic patterns in hierofalcons.     

Condition, growth and reproduction in female red lechwe (Kobus leche leche Gray 1850)

Information on condition, growth and reproduction was collected from a sample of 155 female lechwe in the Linyanti Swamp, northern Botswana. Condition varied significantly with age, reproductive state and season and indications were found of relationships between body mass and the attainment of puberty in young females and body mass and the fertility of adult females. There were also indications that the population was under nutritional stress because of high water levels and that this had caused reductions in the growth rate and fertility of young females. It is suggested that the sensitivity of young females to adverse environmental conditions could be exploited to optimize population monitoring for conservation purposes by using them as an indicator class, rather than monitoring the entire population. Because of relationships between condition, growth and reproduction, it is also suggested that long-term monitoring of condition should form part of any effort to understand population dynamics.     

Genetic consequences of Pleistocene fragmentation: Isolation, drift, and loss of diversity in rock iguanas (Cyclura)

Pleistocene fragmentation of the Great BahamaBank resulted in one large and several smallpopulations of rock iguanas (Cycluracychlura). We explore patterns of geneticvariation within and among these islandpopulations using mitochondrial sequence data(partial ND4 to tRNA^Leu) in combinationwith eight polymorphic microsatellite loci (2to 10 alleles). Genetic data support twophylogeographically distinct groups, AndrosIsland and the Exuma cays. This resultconflicts with current subspecific taxonomy inwhich three subspecies are described. Analysesof allelic data indicate that most islandpopulations are currently demographicallyindependent. Pairwise Fst values between eightisland populations range from 0.18 to 0.63, and6 of 135 individuals are misassigned in anassignment test. Population-genetic diversityis characterized using standard measures suchas number of alleles and heterozygosity (H) inaddition to a normalized Shannon-Weaver indexof diversity (D). We find genetic diversity inthe Andros Island population comparable to thatin other non-piscine animals (avg. # ofalleles = 5, avg. H = 0.56, avg. D = 0.66) while inthe Exuma cays populations these measures aremuch lower (avg. # of alleles = 2.75–1.625, avg.H = 0.43–0.17, avg. D = 0.45–0.18). These dataare used to discuss conservation managementstrategies, including prioritization andtranslocation.     

Phylogeography and Pleistocene refugia of the adder (Vipera berus) as inferred from mitochondrial DNA sequence data

In order to contribute to the debate about southern glacial refugia used by temperate species and more northern refugia used by boreal or cold-temperate species, we examined the phylogeography of a widespread snake species (Vipera berus) inhabiting Europe up to the Arctic Circle. The analysis of the mitochondrial DNA (mtDNA) sequence variation in 1043 bp of the cytochrome b gene and in 918 bp of the noncoding control region was performed with phylogenetic approaches. Our results suggest that both the duplicated control region and cytochrome b evolve at a similar rate in this species. Phylogenetic analysis showed that V. berus is divided into three major mitochondrial lineages, probably resulting from an Italian, a Balkan and a Northern (from France to Russia) refugial area in Eastern Europe, near the Carpathian Mountains. In addition, the Northern clade presents an important substructure, suggesting two sequential colonization events in Europe. First, the continent was colonized from the three main refugial areas mentioned above during the Lower-Mid Pleistocene. Second, recolonization of most of Europe most likely originated from several refugia located outside of the Mediterranean peninsulas (Carpathian region, east of the Carpathians, France and possibly Hungary) during the Mid-Late Pleistocene, while populations within the Italian and Balkan Peninsulas fluctuated only slightly in distribution range, with larger lowland populations during glacial times and with refugial mountain populations during interglacials, as in the present time. The phylogeographical structure revealed in our study suggests complex recolonization dynamics of the European continent by V. berus, characterized by latitudinal as well as altitudinal range shifts, driven by both climatic changes and competition with related species.     

Phylogeography of the North American red fox: vicariance in Pleistocene forest refugia

Fossil, archaeological, and morphometric data suggest that indigenous red foxes in North America were derived from vicariance in two disjunct refugia during the last glaciation: one in Beringia and one in the contiguous USA. To test this hypothesis, we conducted a phylogeographical analysis of the North American red fox within its presettlement range. We sequenced portions of the mitochondrial cytochrome b (354 bp) gene and D-loop (342 bp) from 220 historical red fox specimens. Phylogenetic analysis of the cytochrome b gene produced two clades that diverged c . 400 000 years before present ( bp ): a Holarctic and a Nearctic clade. D-loop analyses of the Nearctic clade indicated three distinct subclades (≥ 99% Bayesian posterior probability); two that were more recently derived (rho estimate c . 20 000 bp ) and were restricted to the southwestern mountains and the eastern portion of North America, and one that was older (rho estimate c . 45 000 bp ) and more widespread in North America. Populations that migrated north from the southern refugium following deglaciation were derived from the colonization of North America during or prior to the Illinoian glaciation (300 000–130 000 bp ), whereas populations that migrated south from the northern refugium represent a more recent colonization event during the Wisconsin glaciation (100 000–10 000 bp ). Our findings indicate that Nearctic clade red foxes are phylogenetically distinct from their Holarctic counterparts, and reflect long-term isolation in two disjunct forest refugia during the Pleistocene. The montane lineage, which includes endangered populations, may be ecologically and evolutionarily distinct.     

Phylogeography and alpha taxonomy of the common dolphin (Delphinus sp.)

The resolution of taxonomic classifications for delphinid cetaceans has been problematic, especially for species in the genera Delphinus, Tursiops and Stenella. The frequent lack of correspondence between morphological and genetic differentiation in these species raises questions about the mechanisms responsible for their evolution. In this study we focus on the genus Delphinus, and use molecular markers to address questions about speciation and the evolution of population structure. Delphinus species have a worldwide distribution and show a high degree of morphological variation. Two distinct morphotypes, long-beaked and short-beaked, have been considered different species named D. capensis and D. delphis, respectively. However, genetic differentiation between these two forms has only been demonstrated in the Pacific. We analysed samples from eight different geographical regions, including two morphologically defined long-beaked form populations, and compared these with the eastern North Pacific populations. We found high differentiation among the populations described as long-beaked instead of the expected monophyly, suggesting that these populations may have evolved from independent events converging on the same morphotype. We observed low genetic differentiation among the short-beaked populations across a large geographical scale. We interpret these phylogeographical patterns in the context of life history and population structure in related species.     

A glandular neckpatch secretion and vocalizations act as signals of territorial status in male puku (Kobus vardoni)

Territorial male puku ( Kobus vardoni ) have thicker necks than bachelors, develop a glandular secretion on their necks and utter bouts of whistles. The neckpatch develops at the time when bachelor males move into the territorial areas and when most conceptions occur. Interactions between two territorial males usually result in a face-off, whilst interactions between a bachelor male and a territorial male usually result in a chase. In both cases, the neckpatch may act as a territorial 'badge' which prevents escalation of the interaction.

Résumé

Le cob de Vardon mâle territorial a un cou plus épais que les mâles célibataires, développe une sécrétion glandulaire au niveau du cou et pousse de brefs siffle-ments. La glande du cou se développe à 1'époque ou les mâles célibataires pénètrent dans les espaces territoriaux, en saison de reproduction. Les interactions entre deux mâles territoriaux débouchent généralement sur un retrait tandis qu'entre un mâle célibataire et un mile territorial, elle aboutit d'habitude à une poursuite. Dans les deux cas, la glande du cou joue le rôle d'un 'badge' territorial qui empêche l'escalade de la confrontation.     

Asymmetric hybridization between two species of sunfishes (Lepomis: Centrarchidae)

Many of the sunfishes (Centrarchidae) hybridize in natural systems, yet little is known about the interactions among hybridizing individuals in nature. We used allozyme electrophoresis to identify interspecific hybrids between bluegill (Lepomis macrochirus) and pumpkinseed (L. gibbosus) in Lake Opinicon, Ontario, and restriction fragment length polymorphism analysis of mitochondrial DNA (mtDNA) to identify the maternal parentage of those individuals. All 44 individuals collected and identified electrophoreti-cally as F₁ hybrids had a pumpkinseed mtDNA haplotype, indicating that hybridization between these species in Lake Opinicon is asymmetrical; F₁ hybrids result only from matings between female pumpkinseed and male bluegill.     

Conservation of the puku antelope (Kobus vardoni, Livingstone) in the Kilombero Valley, Tanzania

Although there are populations of puku antelope Kobusvardoni (Livingstone) scattered throughout eastern and centralAfrica, it is estimated that 75% of the total population is now restricted tothe Kilombero Valley, Tanzania. The Kilombero Valley is an area rich inagricultural potential and natural resources; wildlife populations are also highand the inner valley is a Game Controlled Area, although this only provideslimited protection. Aerial surveys during the 1989, 1994 and 1998 dry seasonsshowed the puku population to be stable at around50000–60000 animals. Livestock populations fluctuated, butincreased from 17309 ± 6487 to 54047 ±17247 over the same period. Signs of human activity (e.g. huts, fieldsand livestock) were highest around the edge of the Game Controlled Area,indicating intense pressure on 'boundary-zone' habitats at thefloodplain–woodland interface. Puku use 'boundary-zone'habitats during the wet season when large areas of grassland are flooded.Potential threats to the puku population are therefore likely due to habitatdegradation through over-grazing by domestic herbivores, agriculturalencroachment, and the expansion of human settlements. Licensed trophyhunting probably has a negligible impact on puku because of very low off-take, but illegalhunting represents a serious threat near human settlements during thewet season and in accessible parts of the floodplain during the dry season.     

High levels of population subdivision in a morphologically conserved Mediterranean toad (Alytes cisternasii) result from recent,multiple refugia: evidence from mtDNA,microsatellites and nuclear genealogies

Pleistocene glaciations often resulted in differentiation of taxa in southern European peninsulas, producing the high levels of endemism characteristic of these regions (e.g. the Iberian Peninsula). Despite their small ranges, endemic species often exhibit high levels of intraspecific differentiation as a result of a complex evolutionary history dominated by successive cycles of fragmentation, expansion and subsequent admixture of populations. Most evidence so far has come from the study of species with an Atlantic distribution in northwestern Iberia, and taxa restricted to Mediterranean‐type habitats remain poorly studied. The Iberian Midwife toad (Alytes cisternasii) is a morphologically conserved species endemic to southwestern and central Iberia and a typical inhabitant of Mediterranean habitats. Applying highly variable genetic markers from both mitochondrial and nuclear genomes to samples collected across the species’ range, we found evidence of high population subdivision within A. cisternasii. Mitochondrial haplotypes and microsatellites show geographically concordant patterns of genetic diversity, suggesting population fragmentation into several refugia during Pleistocene glaciations followed by subsequent events of geographical and demographic expansions with secondary contact. In addition, the absence of variation at the nuclear β‐fibint7 and Ppp3caint4 gene fragments suggests that populations of A. cisternasii have been recurrently affected by episodes of extinction and recolonization, and that documented patterns of population subdivision are the outcome of recent and multiple refugia. We discuss the evolutionary history of the species with particular interest in the increasing relevance of Mediterranean refugia for the survival of genetically differentiated populations during the Pleistocene glaciations as revealed by studies in co‐distributed taxa.