Effects of different management regimes on aquatic macroinvertebrate diversity in Australian rice fields

The maintenance of invertebrate diversity within agricultural environments can enhance a number of agronomically important processes, such as nutrient cycling and biological pest control. However, few Australian studies have been undertaken which specifically address the effects of commercial management regimes on rice field biodiversity. In this study, we compared aquatic macroinvertebrate communities within Australian rice fields cultivated under three commercial management regimes: conventional-aerial (agrochemicals applied, aerially sown), conventional-drill (agrochemicals applied, directly drill-sown) and organic-drill (agrochemical-free, directly drill-sown). These comparisons were undertaken using a combination of community assessment approaches, including morphospecies richness, abundance, diversity and community composition. In general, greater biodiversity existed within macroinvertebrate communities that developed under organic management regimes than under conventional regimes (i.e., higher morphospecies richness and Shannon diversity). Although there were significant differences in several parameters across management regimes early in the rice-growing season, as the growing season progressed the invertebrate communities that developed in the different management regimes became more similar. Only community composition analyses showed significant differences late in the growing season, with functional differences across aquatic faunal assemblages suggested by increased predator abundance in communities sampled from the organic management regime. In order to improve biodiversity within these aquatic environments, management techniques need to be examined individually and the most disruptive processes identified. Alternative management procedures can then be developed that minimise biodiversity loss whilst still delivering required agronomic outcomes.     

Accessing microbial diversity for bioremediation and environmental restoration

Biological methods for decontamination promise an improved substitute for ineffective and costly physico-chemical remediation methods, although so far only a fraction of the total microbial diversity (i.e. the culturable fraction with metabolic potential) has been harnessed for this purpose. Exploring and exploiting the "overlooked" genetic resource might ameliorate concerns associated with the degradation of recalcitrant and xenobiotic pollutants that are not degraded or only poorly degraded by known culturable bacteria. Recent advances in the molecular genetics of biodegradation and in knowledge-based methods of rational protein modification provide insight into the development of "designer biocatalysts" for environmental restoration. The application of such genetically engineered microorganisms (GEMs) in the environment has been limited, however, owing to the risks associated with uncontrolled growth and proliferation of the introduced biocatalyst and horizontal gene transfer. Programming rapid death of the biocatalyst soon after the depletion of the pollutant could minimize the risks in developing these technologies for successful bioremediation.     

Fish diversity in tidepools: assembling effects of environmental heterogeneity

Tidepools are considered ecosystems of high interchangeable fish biota. However, natural and anthropogenic actions that alter negatively marine ecosystems functioning (e.g., algal exploitation) are causing homogenization of fish biodiversity. Here, we describe the functional and taxonomic assembling of fishes in beach rocks of northeastern Brazil. Traits of fish species were retrieved from Fishbase and beta diversity was assessed by the dispersion of abundance, presence-absence and functional diversity in the multivariate space. We explained spatial-temporal variation in: alpha diversity, taxonomic and functional community composition; as well as temporal variation in functional, beta and gamma diversities. We found an annual stability in fish diversity and composition, and that fish biota was assembled mainly per tidepools’ depths. Substrate heterogeneity was correlated to depth, highlighting the role of local features as filters to organize the fish fauna vertically in tidepools, especially a cultivation of algae that influences the local assembling. We also highlight the uniqueness status of beach rocks in the Brazilian tropical region.     

Success criteria and adaptive management for a large-scale wetland restoration project

We are using a 20+ year photographic history of relatively undisturbed and formerly diked sites to predict the restoration trajectories and equilibrium size of a 4,050 ha salt marsh on Delaware Bay, New Jersey (USA). The project was initiated to offset the loss of finfishes from once-through cooling at a local power plant. We used a simple food chain model to estimate the required restoration size. This model assumed that annual macrophyte detritus production and benthic algal production resulted in production of finfishes, including certain species of local interest. Because the marsh surface and intertidal drainage system are used by many finfishes and are the focal points for exchange of detrital materials, the restoration planning focused on both vegetational and hydrogeomorphological parameters. Recolonization bySpartina spp. and other desirable taxa will be promoted by returning a natural hydroperiod and drainage configuration to two types of degraded salt marsh: diked salt hay (Spartina patens) farms and brackish marsh dominated byPhragmites australis. The criteria for success of the project address two questions: What is the bound of expectation for restoration success, and how long will it take to get there? Measurements to be made are macrophyte production, vegetation composition, benthic algal production, and drainage features including stream order, drainage density, channel length, bifurcation ratios and sinuosity. A method for combining these individual parameters into a single success index is also presented. Finally, we developed adaptive management thresholds and corrective measures to guide the restoration process.Corresponding editor: R.E. Turner     

Scales of spatiotemporal variability in macroinvertebrate abundance and diversity in monsoonal streams: detecting environmental change

1. We quantified spatial and temporal variability in benthic macroinvertebrate species richness, diversity and abundance in six unpolluted streams in monsoonal Hong Kong at different scales using a nested sampling design. The spatial scales were regions, stream sites and stream sections within sites; temporal scales were years (1997–99), seasons (dry versus wet seasons) and days within seasons. 2. Spatiotemporal variability in total abundance and species richness was greater during the wet season, especially at small scales, and tended to obscure site‐ and region‐scale differences, which were more conspicuous during the dry season. Total abundance and richness were greater in the dry season, reflecting the effects of spate‐induced disturbance during the wet season. Species diversity showed little variation at the seasonal scale, but variability at the site scale was apparent during both seasons. 3. Despite marked variations in monsoonal rainfall, inter‐year differences in macroinvertebrate richness and abundance at the site scale during the wet season were minor. Inter‐year differences were only evident during the dry season when streams were at base flow and biotic interactions may structure assemblages. 4. Small‐scale patchiness within riffles was the dominant spatial scale of variation in macroinvertebrate richness, total abundance and densities of common species, although site or region was important for some species. The proportion of total variance contributed by small‐scale spatial variability increased during the dry season, whereas temporal variability associated with days was greater during the wet season. 5. The observed patterns of spatiotemporal variation have implications for detection of environmental change or biomonitoring using macroinvertebrate indicators in streams in monsoonal regions. Sampling should be confined to the dry season or, in cases where more resources are available, make use of data from both dry and wet seasons. Sampling in more than one dry season is required to avoid the potentially confounding effects of inter‐year variation, although variability at that scale was relatively small.     

Application of clustering techniques for the characterization of macroinvertebrate communities to support river restoration management

The European Water Framework Directive prescribes that the development of a river assessment system should be based on an ecological typology taking the biological reference conditions of each river type as a starting point. Aside from this assessment, water managers responsible for river restoration actions also need to know the steering environmental factors to meet these reference conditions for biological communities in each ecological river type. As such, an ecological typology based on biological communities is a necessity for efficient river management. In this study, different clustering techniques including the Sørensen similarity ratio, ordination analysis and self-organizing maps were applied to come to an ecological classification of a river. For this purpose, a series of sites within the Zwalm river basin (Flanders, Belgium) were monitored. These river sites were then characterized in terms of biotic (macroinvertebrates), physical–chemical and habitat variables. The cluster analysis resulted in a series of characteristic biotic communities that are found under certain environmental conditions, natural as well as human-influenced. The use of multiple clustering techniques can be of advantage to draw more straightforward and robust conclusions with regard to the ecological classification of river sites. The application of the clustering techniques on the Zwalm river basin, allowed for distinguishing five mutually isolated clusters, characterized by their natural typology and their pollution status. On the basis of this study, one may conclude that river management could benefit from the use of clustering methods for the interpretation of large quantities of data. Furthermore, the clustering results might enable the development of a cenotypology useful for efficiently steering river restoration and enabling river managers to meet a good ecological status in most of the rivers as set by the European Water Framework Directive.     

Relationships between spatial environmental heterogeneity and plant species diversity on a limestone pavement

No empirical studies have examined the relationship between diversity and spatial heterogeneity across unimodal species richness gradients. We determined the relationships between diversity and environmental factors for 144 0.18 m² plots in a limestone pavement alvar in southern Ontario, Canada, including within-plot spatial heterogeneity in soil depth, microtopography and microsite composition. Species richness was unimodally related to mean soil depth and relative elevation. Microsite heterogeneity and soil depth heterogeneity were positively correlated with species richness, and the richness peaks of the unimodal gradients correspond to the maximally spatially heterogeneous plots. The best predictive models of species richness and evenness, however, showed that other factors, such as ramet density and flooding, are the major determinants of diversity in this system. The findings that soil depth heterogeneity had effects on diversity when the effects of mean soil depth were factored out, and that unimodal richness peaks were associated with high spatial heterogeneity in environmental factors represent significant contributions to our understanding of how spatial heterogeneity might contribute to diversity maintenance in plant communities.     

Floral variation and environmental heterogeneity in a tristylous clonal aquatic of the Pantanal wetlands of Brazil

MethodsStyle morph frequencies were sampled from 73 populations distributed across four flooding regimes differing in depth and duration. Measurements of flower size, sex-organ dimension, pollen size and pollen production were made in selected populations, and pollinator assemblages and their functional traits were recorded.ConclusionsThe similar morph structure and evenness of populations, regardless of flooding regime, suggest that sexual reproduction and clonal dispersal are sufficiently common to prevent the signature of founder events from dominating in a region. However, the pervasive occurrence of biased morph ratios in most populations suggests that many are in a non-equilibrium state. The reduced frequency of the mid-styled morph in trimorphic and dimorphic populations may be associated with the weak self-incompatibility of this morph resulting in selfing and inbreeding depression. Clonality in E. azurea and the weak self-incompatibility of the mid-styled morph may make it more vulnerable to geitonogamous selfing.     

Wide corridors with much environmental heterogeneity best conserve high dung beetle and ant diversity

Landscape ecological networks (ENs) consist of landscape-scale conservation corridors that connect areas of high natural value within a production mosaic with protected areas (PAs). In South Africa, ENs have been implemented on a large spatial scale to offset the negative impacts of plantation forestry on indigenous grasslands. We focus on corridor width as a factor for conserving dung beetle and ant diversity within an EN. We also investigate the importance of natural environmental heterogeneity (elevation, vegetation type) and habitat quality (soil hardness, invasive alien plant density). We sampled dung beetles and ants in 30 corridors of different sizes, and at ten sites in a nearby PA. In addition, we also analysed dung beetles according to their feeding guild. Tunnelling dung beetle species richness increased with corridor width. Rolling dung beetle species richness was higher in the PA than in the corridors of the EN. The dung beetle assemblage within the EN differed from that within the PA. Corridors of various widths differed in ant composition but not in species richness. Furthermore, the PA and the EN differed in environmental variables, which contributed to differences in dung beetle species richness and assemblage composition. Within the EN, environmental heterogeneity across the landscape was more important than corridor width for driving species diversity of both dung beetles and ants. When planning future ENs, wide corridors (>280 m) that encompass as much natural heterogeneity across the landscape as possible will best conserve the range of local insect species.     

Aquatic macroinvertebrate richness and diversity associated with native submerged aquatic vegetation plantings increases in longer-managed and wetland-channeled effluent constructed urban wetlands

Macroinvertebrate community structure and assemblages associated with the planted, native submerged aquatic vegetation (SAV) species Heteranthera dubia (Jacq.) MacMillan and Potamogeton nodosus Poiret were examined in a series of constructed urban floodway wetlands, the Dallas Floodway Extension Lower Chain of Wetlands, Dallas, TX, USA. Macroinvertebrate community metrics, including abundance, richness, diversity, and evenness associated with SAV and three different wetlands of varying construction completion dates, water sources (direct or wetland-channeled wastewater effluent), and ecosystem management stage (established/reference or developing) were compared and analyzed. Assemblages at sampling sites were also classified and related to vegetation and wetland physicochemical parameters. Plant species affected only macroinvertebrate abundance, with the less-dissected P. nodosus supporting higher counts than H. dubia. Wetland age and water-effluent type had the most substantial effect on macroinvertebrate communities. The older, longer-managed wetland and wetland-channeled effluent habitat consistently demonstrated higher quality metrics and biodiversity than newly constructed, direct effluent wetland habitat. Increased vegetation cover and wetland age, coupled with moderate water temperature, pH, and DO levels were characteristics of more rich and diverse macroinvertebrate communities, including pollutant-sensitive taxa, such as Ephemeroptera and Trichoptera.

     

Clonal diversity of populations of Calamagrostis epigejos in relation to environmental stress and habitat heterogeneity

The clonal diversity of four populations of the vegetatively propagating grass Calamagrostis epigejos was studied with isozyme markers From each population, 100 individuals were sampled within a 10 × 10 m gnd In two populations of unpolluted sites 5 and 10 clones were distinguished, respectively Higher levels of clonal diversity were found m the populations at an abandoned sewage farm (59 clones) and around a copper smelter (92 clones) The level of clonal diversity observed suggests that sexual recruitment is important for the genetic structure in this species On the unpolluted, presumably more suitable habitats, the clonal diversity was lower than on the habitats polluted with heavy metals The results are discussed in relation to environmental stress and habitat heterogeneity, with the conclusion that in the unpolluted habitats intraspecific competition results in low clonal diversity On the other hand, stressful conditions decrease the importance of competition and facilitate the coexistence of a great number of clones     

Influence of environmental heterogeneity on genetic diversity and structure in an endemic southern Californian oak

Understanding how specific environmental factors shape gene flow while disentangling their importance relative to the effects of geographical isolation is a major question in evolutionary biology and a specific goal of landscape genetics. Here, we combine information from nuclear microsatellite markers and ecological niche modelling to study the association between climate and spatial genetic structure and variability in Engelmann oak (Quercus engelmannii), a wind-pollinated species with high potential for gene flow. We first test whether genetic diversity is associated with climatic niche suitability and stability since the Last Glacial Maximum (LGM). Second, we use causal modelling to analyse the potential influence of climatic factors (current and LGM niche suitability) and altitude in the observed patterns of genetic structure. We found that genetic diversity is negatively associated with local climatic stability since the LGM, which may be due to higher immigration rates in unstable patches during favourable climatic periods and/or temporally varying selection. Analyses of spatial genetic structure revealed the presence of three main genetic clusters, a pattern that is mainly driven by two highly differentiated populations located in the northern edge of the species distribution range. After controlling for geographic distance, causal modelling analyses showed that genetic relatedness decreases with the environmental divergence among sampling sites estimated as altitude and current and LGM niche suitability. Natural selection against nonlocal genotypes and/or asynchrony in reproductive phenology may explain this pattern. Overall, this study suggests that local environmental conditions can shape patterns of genetic structure and variability even in species with high potential for gene flow and relatively small distribution ranges.     

Community assembly of Diptera following restoration of mined boreal bogs: taxonomic and functional diversity

Peat mining causes major degradation to bogs and natural regeneration of these sites is slow and often incomplete. Thus, restoration is an important tool for re-establishing natural ecosystem properties (although perhaps not the original species pool) in mined bogs. Because faunal recovery cannot be taken for granted following plant restoration, we assessed community assembly of higher flies (Diptera: Brachycera) in previously mined bogs 7 years after restoration. Species assemblages in restored sites were compared to those in nearby natural and abandoned mined sites. The three treatment types did not differ significantly in overall species composition, suggesting high resilience to disturbance. However, species richness and evenness were generally lower in abandoned sites than restored and natural sites, which had similar abundance distributions, indicating that restoration enhanced recovery of species diversity and community structure. Functional traits (trophic group, body size) provided a different insight into the status of restored sites. Trophic and small size-class (<5 mm) composition in restored sites were similar to those in abandoned sites. However, high species richness estimates indicated that predators and saprophages successfully colonized restored sites. Species assemblages were mostly affected by coverage of bare peat, Sphagnum mosses and ericaceous shrubs; trophic assemblages were affected by variables directly linked to feeding habits. Our results suggest that active restoration is needed for the renewal of high species and trophic diversity, although it is clear from environmental conditions and functional traits that the restored sites are not yet fully functioning peatlands 7 years after restoration.     

River channel habitat diversity (RCHD) and macroinvertebrate community

Correspondence of habitat and macroinvertebrate diversity was investigated in twenty Czech rivers. With regard to the importance of river characteristics (depth, current velocity and substratum) River Channel Habitat Diversity method was developed within this paper. The method is focused directly on the stream wetted channel and it assesses habitat diversity and richness computed as Shannon-Wiener’s index. Macroinvertebrate samples were taken by the national PERLA method at each study site, diversity index was also calculated and compared with habitat and substrate diversity. Habitat diversity was important for macroinvertebrate communities according to multivariate assessment, but contrary to the hypothesis it was not significantly correlated with macroinvertebrate diversity. Based on the results, broader rivers had lower habitat diversity than smaller streams, and were more influenced by human activities (lower habitat diversity, higher pollution). Results obtained by the RCHD and RHS methods were not significantly correlated.     

Species diversity and functional assessment of macroinvertebrate communities in Austrian rivers

We applied an extensive data set from 211 locations along Austrian rivers to assess community structure and the ratios of functional feeding groups of benthic macroinvertebrates. A total of 569 taxa have been identified. At the catchment scale, the Enns, Salzach, and Traun Rivers exhibited the highest taxa richness whereas the Inn River showed the lowest richness. Beta-diversity was highest along the impounded and fragmented Enns and Drau Rivers. Consequently, high corridor diversity corresponded to a low degree of nestedness. Overall, scrapers and gathering-collectors dominated the benthic community. Further, the relationship between habitat conditions and metrics based on functional feeding groups were statistically analyzed to validate the potential of these metrics as indicators of ecosystem attributes. We examined four major ecosystem attributes: species diversity, material cycling, longitudinal material transport, and lateral material input. Multiple regression analyses for midorder rivers demonstrated that metrics were significantly related to habitat conditions. For example, the metric set indicating primary production was positively correlated with periphyton cover, dissolved oxygen, dominant sediment size, and average annual discharge. Overall, most metrics exhibited unique responses to habitat conditions, implying that they are useful proxies of ecosystem attributes. Thus, a function-based approach based on macroinvertebrates has the potential to become an effective tool for the assessment of river ecosystems.     

Area, altitude and aquatic plant diversity

Several explanations have been given for the decline in species richness with altitude. However, separating the influences of altitude, area, and isolation is difficult because of the conical shape of mountains. We used species lists of aquatic plants from >300 lakes in a small geographical area to investigate the influence of altitude on species richness. Altitude and/or surface area were better predictors of species richness than any measure of water chemistry. The surface area and depth of individual lakes were not related to altitude, neither was the degree of isolation from other waterbodies. Although species range size increased with altitude, range sizes of all but the rarer species (in the data set) encompassed the lowest altitudes, indicating species loss rather than turnover and no influence of the Rapoport rescue effect. Nevertheless we found a decline in species richness with altitude, additive to the effect of area. Species were ascribed to attribute groups according to an a priori classification based on morphological and life-history traits. The number of attribute groups and number of species within each group increased with area, suggesting both increased diversity and coexistence within niches. With altitude, the number of attribute groups declined, but the number of species per group increased, consistent with a loss of richness and reduced competition. The species remaining at high altitudes were characterised by stress tolerant traits, associated with sites of low productivity.
Our results suggest an absolute effect of altitude on species richness, irrespective of other influences and consistent with a decline in productivity.     

Grassland management regimens reduce small-scale heterogeneity and species diversity of beta-proteobacterial ammonia pxidizer populations.

The impact of soil management practices on ammonia oxidizer diversity and spatial heterogeneity was determined in improved (addition of N fertilizer), unimproved (no additions), and semi-improved (intermediate management) grassland pastures at the Sourhope Research Station in Scotland. Ammonia oxidizer diversity within each grassland soil was assessed by PCR amplification of microbial community DNA with both ammonia oxidizer-specific, 16S rRNA gene (rDNA) and functional, amoA, gene primers. PCR products were analysed by denaturing gradient gel electrophoresis, phylogenetic analysis of partial 16S rDNA and amoA sequences, and hybridization with ammonia oxidizer-specific oligonucleotide probes. Ammonia oxidizer populations in unimproved soils were more diverse than those in improved soils and were dominated by organisms representing Nitrosospira clusters 1 and 3 and Nitrosomonas cluster 7 (closely related phylogenetically to Nitrosomonas europaea). Improved soils were only dominated by Nitrosospira cluster 3 and Nitrosomonas cluster 7. These differences were also reflected in functional gene (amoA) diversity, with amoA gene sequences of both Nitrosomonas and Nitrosospira species detected. Replicate 0.5-g samples of unimproved soil demonstrated significant spatial heterogeneity in 16S rDNA-defined ammonia oxidizer clusters, which was reflected in heterogeneity in ammonium concentration and pH. Heterogeneity in soil characteristics and ammonia oxidizer diversity were lower in improved soils. The results therefore demonstrate significant effects of soil management on diversity and heterogeneity of ammonia oxidizer populations that are related to similar changes in relevant soil characteristics.     

Explaining large-scale patterns of vertebrate diversity

The major clades of vertebrates differ dramatically in their current species richness, from 2 to more than 32 000 species each, but the causes of this variation remain poorly understood. For example, a previous study noted that vertebrate clades differ in their diversification rates, but did not explain why they differ. Using a time-calibrated phylogeny and phylogenetic comparative methods, I show that most variation in diversification rates among 12 major vertebrate clades has a simple ecological explanation: predominantly terrestrial clades (i.e. birds, mammals, and lizards and snakes) have higher net diversification rates than predominantly aquatic clades (i.e. amphibians, crocodilians, turtles and all fish clades). These differences in diversification rates are then strongly related to patterns of species richness. Habitat may be more important than other potential explanations for richness patterns in vertebrates (such as climate and metabolic rates) and may also help explain patterns of species richness in many other groups of organisms.     

Phylogenetic and environmental DNA insights into emerging aquatic parasites: implications for risk management

Species translocation leads to disease emergence in native species of considerable economic importance. Generalist parasites are more likely to be transported, become established and infect new hosts, thus their risk needs to be evaluated. Freshwater systems are particularly at risk from parasite introductions due to the frequency of fish movements, lack of international legislative controls for non-listed pathogens and inherent difficulties with monitoring disease introductions in wild fish populations. Here we used one of the world’s most invasive freshwater fish, the topmouth gudgeon, Pseudorasbora parva, to demonstrate the risk posed by an emergent generalist parasite, Sphaerothecum destruens. Pseudorasbora parva has spread to 32 countries from its native range in China through the aquaculture trade and has introduced S. destruens to at least five of these. We systematically investigated the spread of S. destruens through Great Britain and its establishment in native fish communities through a combination of phylogenetic studies of the host and parasite and a novel environmental DNA detection assay. Molecular approaches confirmed that S. destruens is present in 50% of the P. parva communities tested and was also detected in resident native fish communities but in the absence of notable histopathological changes. We identified specific P. parva haplotypes associated with S. destruens and evaluated the risk of disease emergence from this cryptic fish parasite. We provide a framework that can be applied to any aquatic pathogen to enhance detection and help mitigate future disease risks in wild fish populations.