Using multiple indicators to evaluate the ecological integrity of a coastal plain stream system

We demonstrate the use of multiple indicators to characterize the ecological integrity of a coastal plain stream system in the New Jersey Pinelands in relation to human-induced watershed alterations. The individual indicators include pH, specific conductance, stream vegetation and stream-fish, impoundment-fish, and anuran assemblages. We evaluate and compare the utility of the individual and multiple environmental and biological indicators and present a relatively straightforward method for ranking sites. Specific conductance and pH measured at 88 monitoring sites varied in relation to the percentage of altered land (developed land and upland agriculture) within the associated watersheds. All three environmental variables were associated with variations in the composition of stream vegetation and stream fish, impoundment fish, and anuran assemblages. With the exception of impoundment fish, the association between altered land and the multiple-indicator scores based on the two water-quality indicators and the four biological indicators was stronger than that displayed by any of the individual variables.     

Quantifying relationships between land‐use gradients and structural and functional indicators of stream ecological integrity

1. Modification of natural landscapes and land‐use intensification are global phenomena that can result in a range of differing pressures on lotic ecosystems. We analysed national‐scale databases to quantify the relationship between three land uses (indigenous vegetation, urbanisation and agriculture) and indicators of stream ecological integrity. Boosted regression tree modelling was used to test the response of 14 indicators belonging to four groups – water quality (at 578 sites), benthic invertebrates (at 2666 sites), fish (at 6858 sites) and ecosystem processes (at 156 sites). Our aims were to characterise the ecological response curves of selected functional and structural metrics in relation to three land uses, examine the environmental moderators of these relationships and quantify the relative utility of metrics as indicators of stream ecological integrity. 2. The strongest indicators of land‐use effects were nitrate + nitrite, delta‐15 nitrogen value (δ¹⁵N) of primary consumers and the Macroinvertebrate Community Index (a biotic index of organic pollution), while the weakest overall indicators were gross primary productivity, benthic invertebrate richness and fish richness. All indicators declined in response to removal of indigenous vegetation and urbanisation, while variable responses to agricultural intensity were observed for some indicators. 3. The response curves for several indicators suggested distinct thresholds in response to urbanisation and agriculture, specifically at 10% impervious cover and at 0.1 g m^?3 nitrogen concentration, respectively. 4. Water quality and ecosystem process indicators were influenced by a combination of temperature, slope and flow variables, whereas for macroinvertebrate indicators, catchment rainfall, segment slope and temperature were significant environmental predictor variables. Downstream variables (e.g. distance to the coast) were significant in explaining residual variation in fish indicators, not surprisingly given the preponderance of diadromous fish species in New Zealand waterways. The inclusion of continuous environmental variables used to develop a stream typology improved model performance more than the inclusion of stream type alone. 5. Our results reaffirm the importance of accounting for underlying spatial variation in the environment when quantifying relationships between land use and the ecological integrity of streams. Of distinctive interest, however, were the contrasting and complementary responses of different indicators of stream integrity to land use, suggesting that multiple indicators are required to identify land‐use impact thresholds, develop environmental standards and assign ecological scores for reporting purposes.     

A stressed stream ecosystem: macroinvertebrate community integrity and microbial trophic response

A year-long study of a second-order stream in Southwestern Virginia was carried out from 1979–80. One of the objectives of the study was to evaluate the effects of sewage and electroplating plant effluent stress on the trophic response of aquatic invertebrate assemblages and microbial communities in the stream. Quantitative benthic samples were collected periodically at three reference stations and four stressed stations below the outfalls. Invertebrates were counted, identified taxonomically, and classified into functional groups based on their feeding strategies. Ash-free dry weights were obtained for each functional group by date and station, and the number and density of different taxa were calculated as well. Reference stations had diverse invertebrate assemblages; scrapers were well represented and all functional groups were present in reasonably equivalent proportions. Stressed stations were dominated by collector gatherers and filterers to the virtual exclusion of scrapers. The trophic status of the microbial community was determined by suspending artificial substrates in the stream for 1-week periods. The community that colonized the substrates was assayed for ATP and chlorophyll a, and an autotrophy index (AI) was calculated using these values. The autotrophic component of the microbial community was greatest at the reference stations, and the community became primarily heterotrophic below the outfalls. The AI correlated well with the proportion of scrapers. Aquatic invertebrate assemblages and microbial communities responded to stress by changing their trophic structure to fit best the available energy sources. Where heterotrophic microbes dominated, gathering and filtering invertebrates utilized the abundant organic matter. In areas where a mainly autotrophic microbial community existed, scrapers, gatherers, and filterers were all present in balanced proportions.     

The development of appropriate ecological criteria and indicators for community forest conservation using participatory methods: A case study in northeastern Thailand

The paper reports the development and evaluation of relevant local ecological criteria and indicators for participatory resource management of community forest. The study site, the Nong Meg-Nong Hee community forest, Maha Sarakham Province, is in northeastern Thailand. Multi-criteria decision-making (MCDM) was adopted as a decision-making tool to evaluate criteria and indicators, using coarse and fine screening, based on local community participation. The criteria and indicators set consisted of 3 principles, 7 criteria, and 41 indicators covering the main attributes of forest ecosystem conservation. Relevant data were processed in a hierarchical framework and used as a template for further assessment, i.e., Principle 1 (forest ecosystem structure and composition), Principle 2 (forest ecosystem function), and Principle 3 (disturbance signs). The two selection phases comprised (1) the coarse screening based on scoring and ranking, and (2) fine screening, using a pair-wise comparison analysis to classify the order of relative weights of the indicators (importance value) and the consistency index (CI) of each criterion. As a result of coarse screening one criterion and 16 indicators were eliminated from the analysis, while the remaining 3 principles, 6 criteria, and 25 indicators were retained for fine screening. Most criteria showed an acceptance value of less than 10% (tolerance consistency index threshold level). The final set of criteria and indicators, based on locally understandable ecological concepts of forest conservation, was ranked in order of importance under each criterion and applied to the study area. We conclude that these techniques are appropriate for selecting criteria and indicators, as they are relatively transparent, understandable and offer an input to participatory decision-making.     

A comparison of bacterial,ciliate and macroinvertebrate indicators of stream ecological health

We evaluate the reliability of communities of bacteria and ciliated protozoa as indicators of freshwater ecological health. Samples of epilithic biofilm were taken from 18 freshwater streams, impacted by varying types and degrees of catchment modification. Communities of bacteria and ciliates were characterised using DNA fingerprinting techniques (automated ribosomal intergenic spacer analysis and terminal restriction fragment length polymorphism, respectively) and macroinvertebrate data also obtained, for comparison. Similar to the macroinvertebrates, the taxa richness of ciliate communities was reduced in more developed stream catchments; significant differences in the evenness of ciliate communities were also detected. We could identify no significant relationship between the richness of bacterial taxa and the percentage catchment development. However, a significant trend was detected between bacterial community structure and the predominant catchment land use (rural vs. urban) using a Bray–Curtis measure of similarity, a relationship not detected for the ciliate and macroinvertebrate communities. These findings indicate that stream bacterial, ciliate and macroinvertebrate communities each respond differently to various catchment conditions and highlight the potential of microbial communities to provide novel, alternative indicators of stream ecosystem health.     

The influence of stream sediment particle size on bacterial abundance and community composition

Sediment features may play a major role in determining benthic bacterial community structure. In this study, sediment samples were collected on four dates over the course of a year from a Northeast Ohio stream and fractionated into different particle size classes. Abundance of bacteria of various taxa on differentially sized sediment fractions was determined using fluorescent in situ hybridization which relies on taxon-specific oligonucleotide probes that hybridize to rRNA in intact cells. The differences among the size classes were generally small in comparison to the large seasonal changes observed. These seasonal changes differed greatly among taxa; for some, peaks in the number of cells hybridizing a particular probe were in the spring (Domain Bacteria, α-Proteobacteria), while others peaked in the summer/fall (γ-Proteobacteria and the Cytophaga-Flavobacterium). At the species level, the abundances of Burkholderia cepacia and Acinetobacter calcoaceticus were highest in the summer on sediments of all sizes. Seasonal differences appeared to be more of a factor driving community differences than sediment particle size.     

A case study: fecal corticosteroid and behavior as indicators of welfare during relocation of an Asian elephant

This study was a preliminary investigation of an enzyme immunoassay for measuring fecal glucocorticoid metabolites in a male Asian elephant (Elephas maximus) by investigating changes in behavior and cortisol metabolite excretion associated with a putative stressful event. The study collected fecal samples for 10 days prior to, and 10 days after, 24-hr transport and relocation of the elephant to a new herd. The study measured cortisol metabolites using 2 enzyme immunoassays indicating a 389% and 340% increase in cortisol metabolite excretion following relocation. Maximal cortisol metabolite excretion occurred 2 days after relocation and remained elevated during establishment of the new herd. Stereotypic behavior increased approximately 400% after relocation. The relocation disturbed sleep patterns, the elephant spent less time sleeping during the night, and the elephant slept standing up. These results provide preliminary evidence that noninvasive monitoring of fecal cortisol metabolites can be used to investigate adrenal activity in Asian elephants and may be a safe, practical, and accurate welfare indicator.     

A comparison of bacteria and benthic invertebrates as indicators of ecological health in streams

1. We set out to evaluate the reliability of bacterial communities as an indicator of freshwater ecological health.
2. Samples of epilithic biofilm were taken over a 1-year period from four streams, each impacted by varying degrees of human modification. The bacteria within each sample were characterised using a whole community DNA fingerprinting technique (automated ribosomal intergenic spacer analysis). Spatial and temporal differences in community structure between samples were visualised using multi-dimensional scaling and quantified using permutational multivariate anova . Macrobenthic invertebrates, which are commonly used as indicators of stream ecological health, were also sampled for comparison.
3. Multivariate analysis revealed a clear gradient in macroinvertebrate community structure between sites exposed to increased human impact. Bacterial communities, however, could only distinguish the most impacted site from the remainder.
4. Additional research is required to increase the sensitivity of bacterial community analyses before endorsing their use as an indicator of freshwater ecological health.     

The use of fish community structure as a measure of ecological degradation: a case study in two tropical rivers of India

Fish community structure and water chemistry of two tropical rivers of West Bengal, an eastern province of India, were studied for two annual cycles (January 2003-December 2004) and a higher degree of pollution was found in one river (the Churni) than in the other river (the Jalangi). This was reflected in the water quality as well as in fish community structure of the rivers. We observed that 63.6% of fish species appeared to have been eliminated from the polluted Churni river since 1983 in 20 years. For the protection of fish biodiversity and enhancement of fish production, a rational management program should be implemented for the Churni river.     

Use of ATP and carbon: nitrogen ratio as indicators of food quality of stream detritus

SUMMARY. 1. Differences in food quality of suspended and benthic organic detritus, as measured by ATP content and C/N ratio, were assessed along three contrasting headwater streams in southern Ontario.
2. Large differences in ATP content of sediments between cooler upstream reaches and warmer downstream reaches were detected. Sediment ATP content was highly correlated with stream temperature, presumably as a result of faster microbial growth, and with stream gradient. C/N ratios of sediments showed much the same pattern of differences as ATP, but were less variable.
3. By contrast, the ATP content (or BIOC/POM ratio) and C/N ratios of suspended organic matter showed no systematic variation between upstream and downstream or between warmer open and cooler shaded areas, probably due to the very short residence time of suspended particles.     

Language as a community of interacting belief systems: A case study involving conduct toward self and others

Words such as selfish and altruistic that describe conduct toward self and others are notoriously ambiguous in everyday language. I argue that the ambiguity is caused, in part, by the coexistence of multiple belief systems that use the same words in different ways. Each belief system is a relatively coherent linguistic entity that provides a guide for human behavior. It is therefore a functional entity with design features that dictate specific word meaning. Since different belief systems guide human behavior in different directions, specific word meanings cannot be maintained across belief systems. Other sources of linguistic ambiguity include i) functional ambiguity that increases the effectiveness of a belief system, ii) ambiguity between belief systems that are functionally identical but historically distinct, and iii) active interference between belief systems. I illustrate these points with a natural history study of the word selfish and related words in everyday language. In general, language and the thought that it represents should be studied in the same way that ecologists study multi-species communities.     

Angiosperm epiphytes as conservation indicators in forest fragments: A case study from southeastern Minas Gerais, Brazil

Epiphytes play an important role in the flora and ecology of the tropical regions. Most floristic studies within the state of Minas Gerais focus on terrestrial, woody plant diversity, but this is a different approach, looking at epiphytic angiosperms in three highland areas in Southeastern Minas Gerais, namely Mata do Baú (MB), Reserva Biológica da Represa do Grama (RBRG) and Parque Estadual de Ibitipoca (PEI). Regular collections were performed in these sites between 1999 and 2007, complemented by herbarium records for PEI, and 181 species of epiphytic angiosperms were recorded in 66 genera, within 12 families. Orchidaceae, with 89 species, was by far the largest, and the most species rich genera were Peperomia (Piperaceae) and Pleurothallis s.l. (Orchidaceae), with 12 species each. Similarity analysis has shown a closer relationship between MB and RBRG, both composed by seasonal semideciduous forest, however, Jaccard (0.163) index are low. A similarity analysis including other 21 areas of southeastern and southern Brazil revealed strong influence of sazonality, vegetation type and altitude in the composition of the epiphytic flora, and a relative independence regarding the geographic proximity of the areas sampled. From the conservation standpoint, 30 species recorded for this work appear in the red list for the state of Minas Gerais, under different conservation categories. The low similarity indices obtained between the studied areas underline the importance of the conservation of each one of the remaining forest fragments in Minas Gerais, as their relative geographical proximity does not necessarily mean that their epiphytic flora is similar.     

Resource heterogeneity and community structure: A case study inHeliconia imbricata Phytotelmata

Summary Complex or non-additive differences in the distribution and abundance of arthropod species inhabiting the water-filled bracts ofHeliconia imbricata can be created by simple manipulations of resource levels. The primary resources for these assemblages are the corollas of the flowers that accumulate in the bracts. Removing or adding corollas to individual bracts changes the pattern in the abundance of arthropod species within each bract such that bracts with different treatments ultimately differ in composition and numerical associations among species. These results suggest that direct and indirect resource-mediated factors can structure or significantly affect the distribution and abundance of species in these and perhaps other assemblages. Thus, in natural communities, if resources are heterogeneous among patches (such as among the bracts in this study) structure in a given patch may be a function of the resource level of that patch and can differ significantly from neighboring patches that provide different resource levels.     

Exploring the dynamics of ecological indicators using food web models fitted to time series of abundance and catch data

Previously, standardized snap-shot models of the Southern Benguela (1980–1989), Southern Humboldt (1992) and Southern Catalan Sea (1994) ecosystems were examined and found to facilitate assessment of ecosystem characteristics related to the gradient in exploitation status of the ecosystems; highest level of exploitation in the South Catalan Sea (North-western Mediterranean), high in the Southern Humboldt and lower in the Southern Benguela. Subsequently, these models were calibrated and fitted using available catch, fishing effort/mortality and abundance data series and incorporated environmental and internal drivers. This study furthers the previous comparative analyses by comparing changes in ecosystem structure using a selection of ecosystem indicators from the calibrated models and assessing how these indicators change over time in these three contrasting ecosystems. Indicators examined include community turnover rates (production/biomass), trophic level of landings and the community, biodiversity indicators, ratios of predatory/forage fish and pelagic/demersal fish biomass, catch ratios, and network analysis indicators. Using the set of model-derived indicators, the three ecosystems were ranked in terms of exploitation level. This ranking was performed using the values of these indicators in recent years (ecosystem state) as well as their trends over time (ecosystem trend). The non-parametric Kruskal–Wallis and Median tests were used to test for significance of the difference between indicators from the three ecosystems in the last 5 years of the simulation to compare present ecosystem states. We compared the slope of the lineal trend and its significance between ecosystems using the generalized least-squares regression taking auto-correlation into consideration to analyse ecosystem trends. The indicators that capture better the high impacts of fishing prevalent in the Mediterranean and Humboldt ecosystems, and the more conservative exploitation of the Southern Benguela, are the fish/invertebrates biomass and catch ratio, the demersal/pelagic fish biomass and catch ratio (depending on the ecosystem and the fishery being developed), flows to detritus, and the mean trophic level of the community (when large, poorly quantified groups such as zooplankton and detritus are excluded). This study suggests that the best option for classifying ecosystems according to the impact of fishing is to consider a broad range of indicators to understand how and why an ecosystem is responding to particular environmental or fishing drivers (or more likely a combination of these). Our results highlight the importance of including indicators capturing trends over time as well as recent ecosystem states. We also identified 23 pairs of indicators that correlated similarly in the three ecosystems (they showed a significant correlation with same sign). Further comparisons may contribute towards generalization of this list, progressing towards a better understanding of the behaviour of ecological indicators.     

Hydraulic requirements of stream communities: a case study on invertebrates

1. We relate invertebrate assemblages to direct measurements of near‐bed hydraulic conditions that integrate the complex three‐dimensional structure of flow close to the bottom. 2. We sampled invertebrate taxa from a Mediterranean River along a spatial gradient of increasing shear stress in two seasons (spring and autumn) with different hydrological conditions. We used a recently described ordination technique, Outlying Mean Index (OMI) analysis, to study the response of stream invertebrates to near‐bed hydraulic parameters. 3. The distribution of nearly 70% of the taxa collected was significantly related to the hydraulic parameters assessed. In both seasons, shear stress and Froude number were the most important hydraulic parameters whereas substratum particle size and bed roughness had less influence. Most of the 31 taxa collected in both seasons had a higher OMI (an index showing the deviation between the mean environmental conditions used by a taxon and the mean environmental conditions used by a theoretical taxon uniformly distributed across the studied gradient) in autumn (when flow was greater) and were found in samples with high shear stress and high Froude number. This suggests that benthic invertebrates changed their preferences according to flow conditions. 4. Taxon richness declined with increased shear stress during lower flow in spring. Finally, and agreeing with previous results, the proportion of filter feeders and collector‐gatherers was inversely related to shear stress. 5. Our results are a first step towards better habitat suitability models that could inform management decisions.     

Drag coefficients of stream bryophytes: experimental determinations and ecological significance

1. Drag coefficients ( C D) of bryophyte-covered rocks were measured to see whether these differed between species. Replicate rocks, each supporting one of six bryophyte taxa, were attached to a base plate mounted on Teflon bearings in a flow tank. The drag force exerted on rocks with and without bryophyte material was measured by a strain gauge at different water velocities.
2. The difference in C D between rocks with and without bryophyte material was calculated for each plant, and expressed as a percentage change ( δC D). This varied significantly from 0 in three of the six taxa. The cushion-shaped moss Bryum blandum increased the C D by around 10%. The moss Blindia lewinskyae and liverwort Cryptochila grandiflora decreased the C D by around 40 and 30%, respectively, presumably reflecting their streamlined growth.
3. Drag characteristics of aquatic bryophytes may help explain differences in their resistance to fast flows. Furthermore, we suggest that some aquatic bryophytes can increase substrate stability by streamlining rocks, rendering them less prone to movement.     

Patterns of biotic community organization and reorganization: A conceptual framework and a case study

Reorganization is an important concept for confronting complex adaptive systems (CAS) theory with ecological reality. However, little work has been done to translate the reorganization idea into a practical conceptual framework. This paper focuses on community-level reorganization, the process of re-forming patterns in relation to the distribution of species density (abundance) and their frequency of occurrence in space (incidence). We assert that changes in species positions in the incidence–abundance (IA) phase plane depict community reorganization in response to environmental changes. This is because species positions in the IA plane represent the most prominent organizational features of a biotic community.We identified four sequential levels of species reorganization in the IA phase plane: reshuffling of species, species appearance, species disappearance and whole-assemblage shift. We propose that the sequential levels represent an increase in reorganization intensity depending on the extent of environmental change.We formulate the Environmental Change and Re-Organization (ECRO) hypothesis specifying that ecosystems respond predictably in terms of community reorganization in the IA phase plane to external drivers. The predictable reorganization follows the four sequential levels of organization in response to intensity of environmental change. We suggest that the response of a species assemblage to external drivers in sequential levels of reorganization is independent of ecosystem properties, type of environmental variables, taxa, and spatio-temporal scales.We tested the predictability of reorganization according to the ECRO hypothesis, using annual plant assemblages of a semiarid shrubland. These assemblages exhibit CAS properties as suggested by Levin: high species diversity, high numbers of individuals, local interactions among individuals in relation to water consumption, and annually selected species subsets for replication.We investigated annual plant assemblage organization and reorganization for 12 years in response to disturbance and resource input, using the IA phase plane. The field study supports our assertion that reorganization of species assemblages in response to environmental change can be represented by species repositioning in the IA phase plane, and that community reorganization follows the four sequential levels of reorganization in response to the intensity of environmental change.Our conceptual framework and experimental studies demonstrate that hypotheses related to core CAS concepts of organization and reorganization can be tested by linking them with community ecology concepts of species patterns in the IA phase plane. We also discuss the relationship between reorganization in the IA phase plane and resilience, regime shift and ecosystem functioning as affected by species response and effects traits.     

Implications of community concordance for assessing stream integrity at three nested spatial scales in Minnesota,U.S.A.

1. Fish and invertebrate assemblage data collected from 670 stream sites in Minnesota (U.S.A.) were used to calculate concordance across three nested spatial scales (statewide, ecoregion and catchment). Predictive taxa richness models, calibrated using the same data, were used to evaluate whether concordant communities exhibited similar trends in human‐induced taxa loss across all three scales. Finally, we evaluated the strength of the relationship between selected environmental variables and the composition of both assemblages at all three spatial scales. 2. Significant concordance between fish and invertebrate communities occurred at the statewide scale as well as in six of seven ecoregions and 17 of the 21 major catchments. However, concordance was not consistently indicative of significant relationships between rates of fish and invertebrate taxa loss at those same scales. 3. Fish and invertebrate communities were largely associated with different environmental variables, although the composition of both communities was strongly correlated with stream size across all three scales. 4. Predictive taxa‐loss models for fish assemblages were less sensitive and precise than models for invertebrate assemblages, likely because of the relatively low number of common fish taxa in our data set. Both models, however, distinguished reference from non‐reference sites. 5. The importance of concordance, geographic context and scale are discussed in relation to the design and interpretation of stream integrity indicators. In particular, our findings suggest that community concordance should not be viewed as a substitute for an evaluation of how assemblages respond to environmental stressors.