黄土高原不同侵蚀类型区生物结皮中蓝藻的多样性

蓝藻是生物土壤结皮的重要组成部分,具有许多重要的生态功能.迄今为止,黄土高原地区生物结皮中藻类的种类组成及分布鲜有报道.通过野外调查、采样和室内观察、培养、鉴定,对黄土高原水蚀区、水蚀风蚀交错区、风蚀区的生物结皮中蓝藻的多样性及优势种进行了研究.结果表明,黄土高原3个侵蚀类型区生物结皮中蓝藻门植物共发现4科10属54种,其中丝状种类约占87％,占绝对优势;Shannon-Weiner多样性指数水蚀风蚀交错区最高,水蚀区次之,风蚀区最低,依次为2.22,2.20和2.14.水蚀风蚀交错区和水蚀区蓝藻多样性指数差异不显著,但均与风蚀区差异显著.3个侵蚀类型区的生物结皮中蓝藻的种类组成及优势种均有所差异,但均以颤藻科(Oscillatoriaceae)为优势科.水蚀风蚀交错区蓝藻种类最多(39种),以阿氏鞘丝藻(Lyngbya allorgei)为第一优势种;水蚀区次之(26种),以含钙席藻(Phormidum calciola)为第一优势种;风蚀区最少(20种),以颗粒颤藻(Oscillatoria granulata)为第一优势种.黄土高原不同侵蚀类型区生物结皮中蓝藻的多样性差异可能与土壤质地、土壤pH值、气候环境等有关.     

Visual observations of fish from seamounts of the Southern Azores region (the Atlantic Ocean)

Results of observations from the underwater inhabited device “Sever-2” of the behavior and distribution of fish on seamounts of the Azores region up to a depth of 1200 m are provided. In the natural habitat, 52 species of fish of 46 genera belonging to 36 families were recorded. In the ichthyofauna of the studied region, bottom (37.0%) and near-bottom (29.2%) species dominate; the proportion of off-bottom and off-bottom-pelagic species is 18.0 and 12.4%, respectively, and pelagic species account for only 3.4%. Pelagic species Scomber japonicus and Trachurus picturatus; off-bottom-pelagic Beryx splendens, Lepidopus caudatus, and Aphanopus carbo; and near-bottom species Zenopsis conchifer, Macrorhamphosus scolapax, Antigonia capros, Capros aper, Anthias anthias, and Callanthias ruber dominate by numbers and the amount of biomass.     

Malaria Vectors in Ecologically Heterogeneous Localities of the Colombian Pacific Region

The Colombian Pacific region is second nationally in number of malaria cases reported. This zone presents great ecological heterogeneity and Anopheles species diversity. However, little is known about the current spatial and temporal distribution of vector species. This study, conducted in three ecologically different localities of the Pacific region, aimed to evaluate the composition and distribution of Anopheles species and characterize transmission intensity. A total of 4,016 Anopheles mosquitoes were collected representing seven species. The composition and dominant species differed in each locality. Three species were infected with malaria parasites: Anopheles darlingi and An. calderoni were infected with Plasmodium falciparum and An. nuneztovari with Plasmodium vivax VK210 and VK247. Annual EIRs varied from 3.5–7.2 infective bites per year. These results confirm the importance of the primary vector An. nuneztovari in areas disturbed by human interventions, of An. darlingi in deforested margins of humid tropical rainforest and An. albimanus and the suspected vector An. calderoni in areas impacted by urbanization and large-scale palm oil agriculture close to the coast. This constitutes the first report in the Colombia Pacific region of naturally infected An. darlingi, and in Colombia of naturally infected An. calderoni. Further studies should evaluate the epidemiological importance of An. calderoni in the Pacific region.     

Organization and variation of the mitochondrial DNA control region in five Caprinae species

The complete mitochondrial DNA (mtDNA) control region was analyzed from five species of the subfamily Caprinae; Naemorhedus caudatus, N. goral, Capra hircus, Capricornis swinhoei, and Capricornis crispus. Among these species, the control region ranged from 1,096 to 1,212 bp in length. Our results were compatible with the scheme of three domains (ETAS, Central, and CSB) within the control region. A + T < G + C was observed in all the domains. In the Korean gorals, of the 31 variable sites in the whole control region resulting in 15 haplotypes, 27 variable sites were in the ETAS domain. We found two to three tandem repeat in all five species examined in this study, three in N. caudatus and N. goral, two in Capra hircus and C. crispus, and one in C. swinhoei, respectively. All of these repeat units include two short sections of mirror symmetry (TACAT and ATGTA). Short mirror symmetries were well-resolved among five different species, although left domain has high substitution rates. By Kimura’s two parameter method, the genetic distances between the genera Naemorhedus and Capricornis were calculated and divergence time between Naemorhedus and Capricornis may be nearly 2Myr.     

Taxonomy of Mechanitis (F.) (Lepidoptera: Nymphalidae) from the West Colombian Andes: an Integrative Approach

Species identification in the butterfly genus Mechanitis (F.) (Lepidoptera: Nymphalidae) becomes difficult when it is based only on wing color patterns, a common practice in butterfly taxonomy. Difficulties in Mechanitis taxonomy are related to the widespread mimicry and polymorphism among species belonging to this genus. Species recognition and inventories of Mechanitis genus in geographic areas as the Andean region of Colombia are of particular interest and the use of more than one character for taxonomic identification is desirable. In this study, we included morphological, ecological, and mitochondrial DNA data to identify the occurring species in this region. Species of Mechanitis were studied from ecological, morphological, and molecular perspectives considering host plant identification, oviposition behavior, and life cycles under laboratory conditions. Immature morphology, patterns of wing color, and genital structures of adults were also studied. The genetic barcoding region of the cytochrome oxidase I mitochondrial gene was sequenced and used to verify the limits between species previously defined by the other characters and to validate its usefulness for species delimitation in this particular genus. The integrative approach combining independent datasets successfully allowed species identification as compared to the approach based on a single dataset. Three well-differentiated species were found in the studied region, Mechanitis menapis (Hewitson), Mechanitis polymnia (Linnaeus), and Mechanitis lysimnia (Fabricius). New valuable characters that could improve taxonomic identification in this genus are considered.     

Survey of the reptilian fauna of the Kingdom of Saudi Arabia. V. The lizard fauna of Turaif region

Turaif area located in the Northern border region of Saudi Arabia is one of the most important regions of the Kingdom. This work was proposed to throw light on the diversity of lizard fauna investigated through the collection and subsequent identification of specimens from different localities of Turaif region of Kingdom of Saudi Arabia. Sixteen species of lizards belonging to 5 families (Agamidae, Gekkonidae, Lacertidae, Scincidae and Varanidae) were recorded. Lacertidae was the most common family. Three species of lizards namely Acanthodactylus orientalis, Acanthodactylus scutellatus and Acanthodactylus grandis were reported for the first time in the Turaif region of Saudi Arabia. The geographical distribution of the collected species within this province was mapped.     

Grasshoppers and bushcrickets regionally extinct in the Czech Republic: consequence of the disappearance of habitats scattered on the edge of their ranges

According to the International Union for the Conservation of Nature, taxa extinct within a region but extant in other parts of the world should be classified as Regionally Extinct (RE). A taxon is designated RE when there is no reasonable doubt that the last individual capable of reproduction within a region has died or disappeared. A taxon can also be designated RE if it previously but no longer visited a particular region. The species Arcyptera fusca, Arcyptera microptera, Celes variabilis, Gampsocleis glabra, Locusta migratoria, Oedaleus decorus, and Stenobothrus rubicundulus had previously been found in only a small number of localities in the Czech Republic. We studied localities in the Czech Republic where they had been been previously reported but where their occurences had not been recently confirmed; the last specimens were observed in the 1940, 1960, or 1970s. All these species occurred at Czech localities representing borderline areas for such sub-Mediterranean and mountainous (Carpathian) species. The localities therefore had not offered optimal conditions for these insects, and the suitable biotopes were also scattered and isolated from each other. In most cases, these biotopes had disappeared due to change in management (either to natural or artificial forestation). Although certain of these species are excellent flyers (especially O. decorus), the known recent localities are separated by hundreds of kilometers. Based on our failure to find these species after extensive attempts, we conclude that discussed species should be considered regionally extinct in the Czech Republic. These species are of particularly vulnerable vegetation structures. The loss of these species indicate urgency for assessing status of co-occuring taxa.     

Pseudozyma vetiver sp. nov., a novel anamorphic ustilaginomycetous yeast species isolated from the phylloplane in Thailand

Three strains representing one novel yeast species were isolated from the phylloplanes of the vetiver grasses (DMKU-LV90 and DMKU-LV99^T) and sugarcane (DMKU-SP260) collected in Thailand by leaf washing followed by a plating technique. On the basis of morphological, biochemical, physiological and chemotaxonomic characteristics and the sequence analysis of the D1/D2 region of the large subunit (LSU) rRNA gene and the internal transcribed spacer region (ITS), the three strains were found to represent a single novel anamorphic ustilaginomycetous yeast species in the genus Pseudozyma. The name Pseudozyma vetiver sp. nov. is proposed for this novel species. The type strain is DMKU-LV99^T (BCC 61021 = CBS 12824). The novel species showed phylogenetic relationships to the other members of the genus Pseudozyma and to teleomorphic fungal genera, namely Ustilago, Sporisorium and Anomalomyces in Ustilaginaceae, Ustilaginales. The three strains showed identical sequences both in the D1/D2 and ITS regions. The Pseudozyma species closest to the novel species in terms of pairwise sequence similarity in the D1/D2 region was Pseudozyma pruni but with 2.3 % nucleotide substitutions (14 nucleotide substitutions and no gaps out of 606 nt). The novel species and P. pruni differed by 10.9 % nucleotide substitutions (75 nucleotide substitutions and 31 gaps out of 691 nt) in the ITS region. The phylogenetic analysis based on the combined sequences of the ITS region and the D1/D2 region of the LSU rRNA gene showed that the novel species was found to be most closely related to Pseudozyma fusiformata but with 2.9 % nucleotide substitutions in the D1/D2 region and 7.4 % nucleotide substitutions in the ITS region.     

Amphibians distribution and habitats in the southwestern region of Saudi Arabia

This study surveyed 205 wetland sites in the Southwestern Saudi Arabia. We found seven species of amphibians (Anura), which belong to four families: Bufonidae; which includes four species, Sclerophrys tihamica; S. Arabica, Duttaphrynus dhufarensis, and Bufotes viridis; Hylidae, represented by only one species, the tree frog Hyla savignyi; Ranidae, which represented by one species, Pelophylax ridibundus and finally the Dicroglossidae, represented by one species, Euphlyctis ehrenbergii. The reasonable amount of rain received in southwest Arabia, and habitat diversity contribute to the relative abundance of amphibians in the region. Five types of wetland habitats were found in the study area. Valley streams, irrigated farms, seasonal ponds, dam reservoir and lagoons of treated sewage water. The current study revealed the wide spread of amphibians in southwestern Saudi Arabia than what had been reported earlier and confirmed the presence of the Bufotes viridis at three new sites in Asir Heights. It also showed the wide spread of S. arabica in all types of habitats in the southwestern region of Saudi Arabia. Habitat degradation was evident in the region, which might lead to species loss.     

New location of fungus species registered in the red data book of the Tver region

Rare fungus species: Hericium coralloides, Cortinarius violàñås, and Leccanium percandidu were detected for the first time in the Zubtsov area of the Tver region. We note that, in the search for rare species of fungus, attention should be paid to the type of biocenosis.     

Identification of Carnobacterium Species by Restriction Fragment Length Polymorphism of the 16S-23S rRNA Gene Intergenic Spacer Region and Species-Specific PCR

The genus Carnobacterium is currently divided into the following eight species: Carnobacterium piscicola, C. divergens, C. gallinarum, C. mobile, C. funditum, C. alterfunditum, C. inhibens, and C. viridans. An identification tool for the rapid differentiation of these eight Carnobacterium species was developed, based on the 16S-23S ribosomal DNA (rDNA) intergenic spacer region (ISR). PCR-restriction fragment length polymorphism (PCR-RFLP) analysis of this 16S-23S rDNA ISR was performed in order to obtain restriction profiles for all of the species. Three PCR amplicons, which were designated small ISR (S-ISR), medium ISR (M-ISR), and large ISR (L-ISR), were obtained for all Carnobacterium species. The L-ISR sequence revealed the presence of two tRNA genes, tRNA^Ala and tRNA^Ile, which were separated by a spacer region that varied from 24 to 38 bp long. This region was variable among the species, allowing the design of species-specific primers. These primers were tested and proved to be species specific. The identification method based on the 16S-23S rDNA ISR, using PCR-RFLP and specific primers, is very suitable for the rapid low-cost identification and discrimination of all of the Carnobacterium species from other phylogenetically related lactic acid bacteria.     

Structure and polymorphism of a fragment of the Pain-1 vacuolar invertase locus in Solanum species

A fragment of the Pain-1 vacuolar invertase locus was sequenced and its structure and polymorphism were characterized in 17 species of the genus Solanum, including the subgenera Potatoe, Solanum, Leptostemonum, Minon, and Brevantherum. The fragment size varied from 603 to 977 bp as a result of multiple indels in the region of intron III. A total of 80 single nucleotide polymorphisms were found in the coding region, of which 34 caused amino acid substitution in the protein product. Several substitutions and indels were specific to individual taxons or taxon groups, including potato and tomato species. The genetic distances and phylogenetic trees obtained supported the commonly accepted taxonomic classification of the species, indicating that the Pain-1 fragment is suitable for taxonomic identification and phylogenetic studies in Solanaceae.     

Potato-associated arbuscular mycorrhizal fungal communities in the Peruvian Andes

The world's fourth largest food crop, potato, originates in the Andes. Here, the community composition of arbuscular mycorrhizal fungi (AMF) associated with potato in Andean ecosystems is described for the first time. AMF were studied in potato roots and rhizosphere soil at four different altitudes from 2,658 to 4,075 m above mean sea level (mamsl) and in three plant growth stages (emergence, flowering, and senescence). AMF species were distinguished by sequencing an approx. 1,500 bp nuclear rDNA region. Twenty species of AMF were identified, of which 12 came from potato roots and 15 from rhizosphere soil. Seven species were found in both roots and soil. Interestingly, altitude affected species composition with the highest altitude exhibiting the greatest species diversity. The three most common colonizers of potato roots detected were Funneliformis mosseae, an unknown Claroideoglomus sp., and Rhizophagus irregularis. Notably, the potato-associated AMF diversity observed in this Andean region is much higher than that reported for potato in other ecosystems. Potato plants were colonized by diverse species from 8 of the 11 Glomeromycota families. Identification of the AMF species is important for their potential use in sustainable management practices to improve potato production in the Andean region.     

Species delimitation in the European species of Clavulina (Cantharellales, Basidiomycota) inferred from phylogenetic analyses of ITS region and morphological data

The identification of the conventionally accepted species of Clavulina (Cantharellales, Basidiomycota) in Europe (Clavulina amethystina, Clavulina cinerea, Clavulina cristata, and Clavulina rugosa) is often difficult and many specimens are not straightforwardly assignable to any of those four species, which is why some authors have questioned their identity. In order to assess the status of those species, a morphological examination was combined with the molecular analysis of the ITS region. The same six major clades were obtained in the Bayesian and parsimony phylogenetic analyses, and all six clades were well-supported at least by one of the analyses. Morphological characters, such as the overall branching pattern, the presence and intensity of grey colour, the cristation of the apices, and basidiospore size and shape were to various extents correlated with the phylogenetic signal obtained from the ITS region. The congruence between the molecular analyses and morphology, rather than geographical origin, suggests the existence of several species that can be delimited using a combined phylogenetic and morphological species recognition. The analyses revealed that C. cristata and C. rugosa are well-delimited species. In contrast, more than one taxa could be subsumed under the names C. amethystina and C. cinerea, the taxonomical complexity of which is discussed. The ITS region is proved to be adequate to separate phylogenetic species of Clavulina.     

Materials on the flora of diatoms (Centrophyceae) from lakes of the Baikal Region and Transbaikalia

The species composition of Centrophyceae (Bacillariophyta) in the phytoplankton of nine lakes in the Baikal Region and Transbaikalia was studied using electron microscopy (SEM) methods. Nineteen species and varieties of Centrophyceae were recorded; Aulacoseira distans var. septentrionalis and Cyclotella arctica were registered in this region for the first time. Aulacoseira baicalensis, Cyclotella minuta, and Stephanodiscus inconspicuus were also found in the studied lakes and attributed to being endemic to Lake Baikal.     

Comparing the “Big Five”: A framework for the sustainable management of indigenous fruit trees in the drylands of East and Central Africa

There are many fruit trees that could be integrated into dryland farming systems in Sub-Saharan Africa to support income and nutritional security. Fruit contains almost all known vitamins and many essential minerals. Five important fruit species that are cross-regional include: Adansonia digitata, Tamarindus indica, Zizyphus mauritiana, Sclerocarya birrea, and Mangifera indica. While these species are well integrated in the Sahel region, besides mango, they are generally absent from smallholder farms in East and Central Africa. Fruits of the species in this region are mostly harvested unsustainably from the wild communal areas. Unlike the situation in the neighboring Southern Africa region, where S. birrea is utilized extensively in the wine industry, there is virtually no use for the tree in this region, largely because of limited knowledge. Z. mauritiana use is also limited because of low quality germplasm—the hard stone clings to the flesh. An analytical framework based on five factors (site requirements, genetic variability, propagation methods, nutritional properties and utilization, and commercial potential) is used to compare knowledge status and gaps on the species in the region. While this analysis reveals the existence of considerable knowledge between and within the species, lack of improved germplasm and markets emerge as two key constraints limiting their conservation through on-farm planting. Key research and development needs identified are: (a) fostering cross-collaboration and knowledge exchange with other regions where the species are fairly well utilized, and (b) developing criteria and indicators for monitoring impacts and increased investments on the “Big Five” on livelihood of dryland communities and on biodiversity conservation.     

Phylogenetic Analysis of the Hypervariable Region of the 18S rRNA Gene of Cryptosporidium Oocysts in Feces of Canada Geese (Branta canadensis): Evidence for Five Novel Genotypes

To assess genetic diversity in Cryptosporidium oocysts from Canada geese, 161 fecal samples from Canada geese in the United States were analyzed. Eleven (6.8%) were positive for Cryptosporidium spp. following nested PCR amplification of the hypervariable region of the 18S rRNA gene. Nine PCR products from geese were cloned and sequenced, and all nine diverged from previously reported Cryptosporidium 18S rRNA gene sequences. Five sequences were very similar or identical to each other but genetically distinct from that of Cryptosporidium baileyi; two were most closely related to, but genetically distinct from, the first five; and two were distinct from any other sequence analyzed. One additional sequence in the hypervariable region of the 18S rRNA gene isolated from a cormorant was identical to that of C. baileyi. Phylogenetic analysis provided evidence for new genotypes of Cryptosporidium species in Canada geese. Results of this study suggest that the taxonomy of Cryptosporidium species in geese is complex and that a more complete understanding of genetic diversity among these parasites will facilitate our understanding of oocyst sources and species in the environment.     

Biochemical and Molecular Characterization of Some Centaurea Species Growing in the Eastern Anatolia Region of Turkey

Random amplified polymorphic DNA (RAPD) and fatty acid (FAME) profiles were used to examine phenotypic and genetic relationships among 16 Centaurea species growing wild in the eastern Anatolia region of Turkey. Thirteen decamer primers were used to examine polymorphism. According to the RAPD results, 99 amplicons in the size range of 50–1000 bp were produced from 13 primers in 16 Centaurea species. Genetically four distinct groups were determined among the species of Centaurea, which represents high genetic variation. In the 16 species, 14 fatty acids were determined according to FAME results. Both FAME and RAPD results showed that C. virgata is genetically different from other species. The differences in the composition of fatty acids among Centaurea species suggest that fatty acid profiles could be used to differentiate among some of these species. Results of this study show that RAPD and FAME analyses are consistent.     

Inversion polymorphism and ecological specialization of malaria mosquitoes (Diptera, Culicidae) in Karelia

The species composition and inversion polymorphism were studied in malaria mosquito larva hemipopulations of Karelia. Three malaria mosquito species??Anopheles messeae, A. beklemishevi, and A. maculipennis??were found in the region. The northern boundary of their range is at 65°N. The greatest species diversity was observed in biotopes of the central region. Within-species chromosome polymorphism was observed in larva populations of all three species. For A. messeae, maximum karyotype diversity indices were established for the southern and northern regions of Karelia.