Population Diversity of Rice Stripe Virus-Derived siRNAs in Three Different Hosts and RNAi-Based Antiviral Immunity in Laodelphgax striatellus

Background

Small RNA-mediated gene silencing plays evolutionarily conserved roles in gene regulation and defense against invasive nucleic acids. Virus-derived small interfering RNAs (vsiRNAs) are one of the key elements involved in RNA silencing-based antiviral activities in plant and insect. vsiRNAs produced after viruses infecting hosts from a single kingdom (i.e., plant or animal) are well described. In contrast, vsiRNAs derived from viruses capable of infecting both plants and their insect vectors have not been characterized.

Methodology/Principal Findings

We examined Rice stripe virus (RSV)-derived small interfering RNAs in three different hosts, Oryza sativa, Nicotiana benthamiana and a natural RSV transmitting vector Laodelphgax striatellus, through deep sequencing. Our results show that large amounts of vsiRNAs generated in these hosts after RSV infection. The vsiRNAs from N. benthamiana and L. striatellus mapped equally to the genomic- and antigenomic-strand of RSV RNAs. They showed, however, a significant bias in those from O. sativa. Furthermore, our results demonstrate that the number and size distributions of vsiRNAs in the three hosts were very different. In O. sativa and N. benthamiana, most vsiRNAs were mapped to the discrete regions in the RSV genome sequence, and most of the vsiRNAs from these two hosts were generated from RSV genomic RNAs 3 and 4. In contrast, the vsiRNAs identified in L. striatellus distributed uniformly along the whole genome of RSV. We have also shown that silencing Agronaute 2 in L. striatellus enhanced RSV accumulation in this host.

Conclusions/Significance

Our study demonstrates that the core RNA-induced gene silencing (RNAi) machinery is present in L. striatellus. We also provide evidence that the RNAi-mediated immunity against RSV is present in L. striatellus. We propose that a common small RNA-mediated virus defense mechanism exists in both helipterum insects and plants, but the vsiRNAs are generated differentially in different hosts.     

江苏水稻黑条矮缩病毒S10的cDNA克隆序列分析

从来自江苏连云港并在本实验室保存的水稻黑条矮缩病毒接种的病株玉米中提取dsRNA,采用改进的单引物扩增技术获得了病毒基因组片段S10的cDNA克隆并测定了其全序列.结果表明S10全长1 801bp,含有一个ORF,组织结构与日本报道的RBSDV基本一致,核苷酸和推导的氨基酸序列与MRDV的相似性分别为87.5%和92.6%,与RBSDV的相似性分别为93.3%和96.4%.该研究也为病毒dsRNA克隆和序列分析奠定了基础.     

Identification of Novel Oryza sativa miRNAs in Deep Sequencing-Based Small RNA Libraries of Rice Infected with Rice Stripe Virus

MicroRNAs (miRNAs) play essential regulatory roles in the development of eukaryotes. Methods based on deep-sequencing have provided a powerful high-throughput strategy for identifying novel miRNAs and have previously been used to identify over 100 novel miRNAs from rice. Most of these reports are related to studies of rice development, tissue differentiation, or abiotic stress, but novel rice miRNAs related to viral infection have rarely been identified. In previous work, we constructed and pyrosequenced the small RNA (sRNA) libraries of rice infected with Rice stripe virus and described the character of the small interfering RNAs (siRNA) derived from the RSV RNA genome. We now report the identification of novel miRNAs from the abundant sRNAs (with a minimum of 100 sequencing reads) in the sRNA library of RSV-infected rice. 7 putative novel miRNAs (pn-miRNAs) whose precursor sequences have not previously been described were identified and could be detected by Northern blot or RT-PCR, and were recognized as novel miRNAs (n-miRNAs). Further analysis showed that 5 of the 7 n-miRNAs were up-expressed while the other 2 n-miRNAs were down-expressed in RSV-infected rice. In addition, 23 pn-miRNAs that were newly produced from 19 known miRNA precursors were also identified. This is first report of novel rice miRNAs produced from new precursors related to RSV infection.     

抗南方水稻黑条矮缩病水稻光温敏核不育系的筛选和鉴定

对东乡野生稻(Oryza rufipogon Griff.)3个生态群落株系及协青早B//协青早B/东乡野生稻的BC1F6株系进行了南方水稻黑条矮缩病抗性鉴定,筛选出抗性较好的种质资源。利用筛选到的协青早B//协青早B/东乡野生稻抗性株系,与光温敏核不育系C47S杂交转育,鉴定筛选到6份抗性较好的光温敏核不育系,为选育抗南方水稻黑条矮缩病的两系杂交稻组合奠定了材料基础;同时研究发现,来源于东乡野生稻的对南方水稻黑条矮缩病的抗性可能由数量性状基因控制。     

Association of Rice Gall Dwarf Virus with Microtubules Is Necessary for Viral Release from Cultured Insect Vector Cells

Vector insect cells infected with Rice gall dwarf virus, a member of the family Reoviridae, contained the virus-associated microtubules adjacent to the viroplasms, as revealed by transmission electron, electron tomographic, and confocal microscopy. The viroplasms, putative sites of viral replication, contained the nonstructural viral proteins Pns7 and Pns12, as well as core protein P5, of the virus. Microtubule-depolymerizing drugs suppressed the association of viral particles with microtubules and prevented the release of viruses from cells without significantly affecting viral multiplication. Thus, microtubules appear to mediate viral transport within and release of viruses from infected vector cells.Rice gall dwarf virus (RGDV), Rice dwarf virus (RDV), and Wound tumor virus, members of the genus Phytoreovirus in the family Reoviridae, multiply both in plants and in invertebrate insect vectors. Each virus exists as icosahedral particles of approximately 65 to 70 nm in diameter, with two concentric layers (shells) of proteins that enclose a core (1, 13). The viral genome of RGDV consists of 12 segmented double-stranded RNAs that encode six structural (P1, P2, P3, P5, P6, and P8) and six nonstructural (Pns4, Pns7, Pns9, Pns10, Pns11, and Pns12) proteins (reference 21 and references therein). The core capsid is composed of P3, the major protein, which encloses P1, P5, and P6 (12). The outer layer consists of two proteins, namely, P2 and P8 (10, 12).Cytoplasmic inclusion bodies, known as viroplasms or viral factories, are assumed to be the sites of replication of viruses in the family Reoviridae. After infecting insect vector cell monolayers (VCMs) in culture with RDV, Wei et al. (19) examined the generation of RDV particles in and at the periphery of such viroplasms. VCMs are also useful for studies of RGDV, allowing detailed analysis of the synchronous replication and multiplication of this virus (14). In order to identify the viroplasms in RGDV-infected VCMs, we examined the subcellular localization of Pns7, Pns12, P5, and RGDV particles by confocal immunofluorescence microscopy. Pns7 and Pns12 of RGDV correspond to Pns6 and Pns11, respectively, which are components of the viroplasm of RDV (12, 19). RGDV P5 is a counterpart of RDV P5, a core protein that locates inside the viroplasm in RDV-infected cells. We inoculated VCMs with RGDV, purified by the method reported in reference 15, at a multiplicity of infection (MOI) of 1; fixed them 48 h postinfection (p.i.); probed the cells with Pns7-, Pns12-, P5-, and viral-antigen-specific antibodies (11, 12) that had been conjugated to fluorescein isothiocyanate (FITC) (Sigma, St. Louis, MO) or rhodamine (Sigma); and examined them by confocal microscopy, as described previously (19). In RGDV-infected cells, Pns7, Pns12, and P5 were detected as punctate inclusions (Fig. ​(Fig.1).1). Immunostained viral antigens formed ringlike structures around the punctate inclusions. When the images were merged, Pns7, Pns12, and P5 were colocalized in the punctate inclusions, indicating that these proteins were constituents of the viral inclusions (Fig. ​(Fig.1).1). Our observations revealed the similar respective localizations of the corresponding nonstructural proteins, core proteins, and viral particles of two phytoreoviruses, RGDV and RDV, in infected cells. Thus, Pns7 and Pns12 of RGDV had attributes common to their functional counterparts—Pns6 and Pns11, respectively—of RDV (19). The core protein P5 was located inside the viroplasms, and the viral antigens were distributed at the periphery of the viroplasms. The results, together, suggest that RGDV and RDV exploit similar replication strategies. Specific fluorescence was not detected in noninfected cells after incubation with Pns7-, Pns12-, P5-, and viral-antigen-specific antibodies (data not shown).Open in a separate windowFIG. 1.Subcellular localization of Pns7, Pns12, and P5 of RGDV and viral antigens in RGDV-infected VCMs 48 h p.i. Arrowheads show ringlike profiles of viral antigens that surround viral inclusions, which have been immunostained with the Pns12-specific antibodies. Arrows show the fibrillar profiles of immunostained viral antigens. Bars, 5 μm.In addition to the viral location at the periphery of the viral inclusions visualized as immunostained Pns12 (Fig. ​(Fig.1),1), the antigens were distributed as bundles of fibrillar structures, a form not observed in RDV-infected cells. To analyze the entity of the bundles of fibrillar structures, VCMs on coverslips were inoculated with RGDV at an MOI of 1, fixed at 48 h p.i., and examined by electron microscopy (EM), as described previously (19). We observed viral particles of approximately 70 nm in diameter in close association with the free ends, as well as along the edges, of tubules of approximately 25 nm in diameter (Fig. 2A to D). The abundant bundles of tubules with closely associated viral particles were clearly in contact with the periphery of granular, electron-dense inclusions of 800 to 1,200 nm in diameter (Fig. ​(Fig.2B),2B), namely, viroplasms. The dimensions and appearance of the tubular structures resembled those of microtubules (Fig. ​(Fig.2C)2C) (17). Transverse sections of tubules revealed arrays of closed circles of approximately 25 nm in diameter, with viral particles attached directly or via a filament to the circumference (Fig. ​(Fig.2D2D).Open in a separate windowFIG. 2.Association of RGDV particles with microtubules. (A) Electron micrograph showing RGDV particles associated with microtubules in virus-infected VCMs 48 h p.i. Bar, 300 nm. VP, electron-dense inclusion. (B) Virus-associated microtubules in contact with the periphery of the electron-dense inclusion indicated by a white rectangle in panel A. Bar, 300 nm. (C) Viral particles along the edges of tubules of approximately 25 nm in diameter. Bar, 150 nm. (D) Transverse sections of arrays of closed circles of approximately 25 nm in diameter with viral particles attached to their circumference directly (arrow) or via a filament (arrowhead). Bar, 150 nm. (E) Confocal micrograph showing the association of viral particles with microtubules in virus-infected VCMs 48 h p.i. Microtubules were stained with α-tubulin-specific antibodies conjugated to FITC; viral particles were stained with viral-antigen-specific antibodies conjugated to rhodamine. Arrowheads indicate the ringlike organization of viral antigens. Arrows show the colocalization of fibrillar profiles of viral antigens with microtubules. The insets show ringlike and fibrillar profiles of immunostained viral antigens. The circular areas inside the ringlike structures are viroplasms. Bar, 5 μm.Our observations suggested that RGDV particles might attach to microtubules in infected cells. To examine this possibility, we inoculated VCMs with RGDV at an MOI of 1, fixed the cells 48 h p.i., immunostained them with α-tubulin-specific antibodies conjugated to FITC and with viral-antigen-specific antibodies conjugated to rhodamine, and analyzed them by confocal microscopy, as described previously (19). Viral antigens were visualized as ringlike and fibrillar structures (Fig. ​(Fig.2E).2E). Double immunostaining of the infected cells revealed that a network of microtubule-based filaments colocalized with most of the fibrillar structures that represented viral antigens, confirming the association of viral particles with the microtubule-like inclusions visualized by EM (Fig. ​(Fig.2A).2A). Nonspecific reactions were not detected with either of the stainings (data not shown). Our results suggested that RGDV particles, which assembled at the periphery of viroplasms, might be transported along microtubules. Due to the lack of RGDV infectious clones fused with green fluorescent protein and the effective gene transfection system for VCMs, we could not observe the trafficking of RGDV particles along microtubules in living cells.We then used three-dimensional (3-D) electron tomographic microscopy (ET) to reveal a new level of morphological detail about the association of RGDV with microtubules. To produce 3-D reconstructions of RGDV-infected cells, we fixed, embedded, and sectioned infected leafhopper cells as described previously (5). We chose a representative region that showed numerous RGDV particles close to bundles of microtubules for this novel tomographic analysis. A single-axis tilt series was collected manually from −60° to 60° with 2° increments using an H9500SD EM (Hitachi, Tokyo) operated at 200 kV. These tomographic data were recorded at a defocus of 3.6 μm on the TVIPS 2k × 2k charge-coupled-device camera (TVIPS, Gauting, Germany). Microscopic magnification of ×15,000, providing 1.28 nm/pixel, was enough to view the microtubules and virus particles following tomographic reconstruction of the tilt series using IMOD (7). As shown in the 3-D tomogram in Fig. ​Fig.3,3, most of the RGDV particles were bound to the edges of bundles of microtubules. The RGDV particles along the edges of microtubules were arrayed in an orderly but uncrowded manner (Fig. ​(Fig.3).3). Our ET analysis also revealed that some viral particles were linked to filaments of approximately 10 nm in diameter (Fig. ​(Fig.3B).3B). Morphologically, these filaments resembled vimentin intermediate filaments (4). In many lines of cultured cells, vimentin intermediate filaments partially overlap the microtubules, and there is evidence that the two filament systems interact (3, 9, 20). Unfortunately, vimentin-specific monoclonal antibodies from mouse and rabbit did not react specifically with our leafhopper cells (data not shown), but the nature of the intermediate filaments was apparent from their dimensions, intracellular location, and organization. Thus, our ET analysis indicated that RGDV particles were able to associate directly and/or via intermediate filaments with microtubules.Open in a separate windowFIG. 3.ET analysis showing the association of RGDV particles with microtubules either directly or via intermediate filaments. (A) Translucent representation of the reconstructed viruses lining up with microtubules. (B) Slice of the reconstructed volumes from the inset of A to show the association of RGDV particles with intermediate filaments (arrows). Bars, 150 nm.To examine the role of the microtubules for RGDV activity, we added a microtubule-disrupting agent, either nocodazole (Sigma) or colchicine (Sigma), 2 hours after inoculation of VCMs with RGDV at an MOI of 1 and then continued the incubation for a further 46 h. Cells were fixed 48 h p.i. and stained with α-tubulin-specific antibodies conjugated to FITC (Sigma) and viral-particle-specific antibodies conjugated to rhodamine, with subsequent confocal fluorescence microscopy, as described previously (19). We tested a range of drug concentrations in preliminary experiments (data not shown) and determined optimal concentrations. Treatment of infected cells with 10 μM nocodazole or 5 μg/ml colchicine resulted in the complete disassembly of microtubules, with the accumulation of ringlike structures exclusively and no fibrillar structures representative of viral antigens in the cytoplasm (Fig. ​(Fig.4A).4A). These ringlike aggregates of viral antigens were confirmed to surround viroplasms when the latter were immunostained for Pns12, as described above and shown in Fig. ​Fig.1.1. Nonspecific reactions were not detected with either staining (data not shown). These results suggest that RGDV particles multiply around the viroplasm but are unable to distribute along the microtubules in the presence of the chemicals.Open in a separate windowFIG. 4.(A) Effects of microtubule-disrupting agents on the formation of microtubules and fibrillar profiles of immunostained viral antigens. Bars, 5 μm. The insets show the ringlike profiles of immunostained viral antigens after treatment with inhibitors, suggesting that viral replication occurs in the presence of each inhibitor. (B) Effects of drugs on the production of cell-associated (gray bars) and extracellular (black bars) viruses in VCMs infected with RGDV. The error bars indicate standard deviations.During the process of infection, microtubules play important roles in viral entry, intracellular trafficking, and extracellular release (2, 8, 16). We next investigated the effects of the microtubule-disrupting agents on the production in and release of viruses from virus-infected cells by the method described previously (18). Nocodazole or colchicine was added 2 h after inoculation of VCMs with RGDV at an MOI of 1, and incubation was continued for a further 46 h. The extracellular medium and the cells were collected separately. The medium was centrifuged for 30 min at 15,000 × g, and the supernatant was collected. The cells were subjected to three cycles of freezing and thawing to release viral particles. The viral titer of each sample was determined, in duplicate, by the fluorescent focus assay as described previously (6), with VCMs and a magnification of ×10. As shown in Fig. ​Fig.4B,4B, nocodazole (20 μM) and colchicine (10 μg/ml) caused a fivefold reduction in the number of released viruses, compared to that from untreated control infected cells. In contrast, each inhibitor at the selected dose failed to significantly reduce the titer of cell-associated viruses (less then 5% compared to that from untreated control). These results suggest that the inhibitors impeded the release of viruses into the medium without affecting viral production in infected cells. We do not yet understand why the viral titer was not elevated in drug-treated cells from which viral release was inhibited. However, our data show clearly that disruption of microtubules directly inhibited the release of mature viral particles from infected cells.In conclusion, EM, ET, immunofluorescence staining, and experiments with two inhibitors support the hypothesis that the transport of RGDV from viroplasms to the plasma membrane and into the medium is dependent on microtubules. In the case of RDV, vesicular compartment-containing viral particles that locate adjacent to the viroplasms were considered to play an important role in the transport and release of the virus from the viroplasm to the culture medium in infected VCMs (18). On the other hand, a fibrillar structure (Fig. ​(Fig.11 and ​and2),2), not observed in RDV-infected cells, was considered to function in the trafficking of RGDV from viroplasm into the culture medium (Fig. ​(Fig.4)4) in the present study. RGDV and RDV, both members of the Phytoreovirus genus, have some common biological and biochemical properties but are distinct from each other (13). For example, viruses are restricted to phloem-related cells in RGDV-infected plants but distributed in many types of cells in RDV-infected plants, and a P2 protein with a function to adsorb to and/or penetrate into insect vector cells is present in RGDV and absent in RDV in particles purified using carbon tetrachloride. The present molecular cytopathological study revealed one more difference between the viruses: they have different means for transporting and releasing infectious particles to the cell exterior. The presence of such a molecular mechanism may accelerate the secondary infections by the viruses in infected vector insects, and the high propagation speed would allow the viruses to complete infection cycles through insects and plants.     

单头灰飞虱体内水稻条纹叶枯病毒的快速检测

利用RT-PCR检测感病植株和单头带毒灰飞虱,均扩增出水稻条纹叶枯病毒特有的一个长540 bp的片段,且人工饲毒虫的病毒含量高于自然感病稻田虫。以病毒S蛋白的多克隆抗血清,采用Western印迹技术从单虫体内检测到病毒抗原的2个专一性条带,大小分别为20.7和19.7 kDa。DIBA（dot immunobinding assay）检测法快速、简便,但专一性和灵敏度不及RT-PCR与Western印迹检测。对不同检测方法所得昆虫带毒率差异的原因进行了探讨。     

运用代谢组学研究RSV与水稻的互作初探

水稻条纹叶枯病严重威胁着我国的水稻生产,该病由水稻条纹病毒（Rice stripe virus,RSV）引起。目前,对水稻与RSV互作机制的认识还较少,这是制定有效措施来对RSV进行防控的一大障碍。代谢组学是新近发展起来的一种研究手段,它通过考察生物体系包括细胞、组织或整个生物体在受到刺激或扰动后,在代谢水平上的应答,来研究一系列的生物现象。运用代谢组学对水稻与RSV的互作进行了初步探索。GC-MS分析表明,RSV的侵染能显著影响水稻的代谢谱,且在代谢组水平上,不同抗感性的水稻对RSV的响应存在着差异。与NIST质谱数据库中的信息比较,从武育粳3号健康植株中鉴定到内源性代谢物12种、武育粳3号发病植株中11种、KT95-418健康植株中9种、KT95-418发病植株中14种。     

Transmission by Laodelphax striatellus Fallen of Rice black‐streaked dwarf virus from Frozen Infected Rice Leaves to Healthy Plants of Rice and Maize

Rice black‐streaked dwarf virus (RBSDV) is transmitted naturally to important crops such as rice, maize, barley and wheat in a persistent manner by the planthoppers, Laodelphax striatellus, Unkanodes sapporona and Unkanodes albifascia. Insect vector transmission tests are the basis for identifying viral incidence, evaluating the resistance of varieties and selecting resistance sources for rice and maize breeding. A simple, rapid and reliable method is described by which virus‐free small brown planthoppers (L. striatellus) acquired RBSDV from frozen infected rice leaves and transmitted it to healthy rice and maize plants. After feeding on frozen infected rice leaves, the planthoppers were tested by RT‐PCR for the presence of virus after 10, 15, and 22 days, respectively. The percentages of RBSDV‐containing insects were 0, 25 and 71.43% of L. striatellus fed on frozen infected rice leaves compared to 0, 28.25 and 71.43% of L. striatellus fed on fresh infected rice leaves, respectively. In transmission tests, three of eight rice seedlings (37.5%) and four of eight maize seedlings (50%) were inoculated by the planthoppers that had fed previously on frozen leaves and had allowed a 22 days latent period and showed typical disease symptoms. As a positive control, four of eight rice seedlings (50%) and four of six maize seedlings (66.67%) became infected. All rice and maize plants expressing disease symptoms were identified as virus‐positive by RT‐PCR. These results indicated that the planthoppers acquired RBSDV from frozen infected leaves and transmitted the virus to healthy plants.     

The P2 Protein of Rice Dwarf Phytoreovirus Is Required for Adsorption of the Virus to Cells of the Insect Vector

Intact particles of rice dwarf phytoreovirus adsorbed to and entered monolayer-cultured cells of the insect vector Nephotettix cincticeps and multiplied within the cells. Particles that lacked the P2 protein neither attached to nor infected such cells. Furthermore, P2-free particles obtained from a transmission-competent isolate of the virus were unable to infect insect vectors that had been allowed to feed on these virus particles through a membrane. However, when such virus particles were injected into insects via a glass capillary tube they successfully infected the insects, which became able to transmit the virus. These results support the hypothesis that, while P2-free particles can neither interact with nor infect cells in the intestinal tract of the insect vector, they do retain the ability to infect such cells when physically introduced into the hemolymph by injection.     

Overexpression of Rice Black-Streaked Dwarf Virus P7-1 in Arabidopsis Results in Male Sterility Due to Non-Dehiscent Anthers

Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, is propagatively transmitted by the small brown planthopper (Laodelphax striatellus Fallén). RBSDV causes rice black-streaked dwarf and maize rough dwarf diseases, which lead to severe yield losses in crops in China. Although several RBSDV proteins have been studied in detail, the functions of the nonstructural protein P7-1 are still largely unknown. To investigate the role of the P7-1 protein in virus pathogenicity, transgenic Arabidopsis thaliana plants were generated in which the P7-1 gene was expressed under the control of the 35S promoter. The RBSDV P7-1-transgenic Arabidopsis plants (named P7-1-OE) were male sterility. Flowers and pollen from P7-1-transgenic plants were of normal size and shape, and anthers developed to the normal size but failed to dehisce. The non-dehiscent anthers observed in P7-1-OE were attributed to decreased lignin content in the anthers. Furthermore, the reactive oxygen species levels were quite low in the transgenic plants compared with the wild type. These results indicate that ectopic expression of the RBSDV P7-1 protein in A. thaliana causes male sterility, possibly through the disruption of the lignin biosynthesis and H₂O₂-dependent polymerization pathways.     

Characterization of Anionic Peroxidases in Tomato Isolines Infected by Meloidogyne incognita

Changes in peroxidase activity during nematode infection were studied using root extracts of tomato near-isogenic lines differing in resistance to Meloidogyne incognita. Total peroxidase activity increased slightly in crude extracts of four susceptible isolines but doubled in two resistant lines, Monita and Motaci. Nematode infection enhanced levels of both p-phenylenediamine-pyrocatechol oxidase and syringaldazine oxidase 7 days after inoculation, especially in resistant lines. This elevated peroxidase activity in resistant isolines was caused by an increase in anionic peroxidase activity. These enzymes, which likely are involved in lignification, were isolated and purified from tomato isolines by ammonium sulfate precipitation, high performance ion-exchange chromatography, and gel electrophoresis. The purified anionic peroxidase extracts contained an electrophoretic band with Rf 0.51 that was present in extracts of infected but not uninfected roots.     

Insect Virus Proteins (FALPE and p10) Self-Associate To Form Filaments in Infected Cells

Entomopoxviruses and baculoviruses are pathogens of insects which replicate in the cytoplasm and nuclei of their host cells, respectively. During the late stages of infection, both groups of viruses produce occlusion bodies which serve to protect virions from the external environment. Immunofluorescence and electron microscopy studies have shown that large bundles of filaments are associated with these occlusion bodies. Entomopoxviruses produce cytoplasmic fibrils which appear to be composed of the filament-associated late protein of entomopoxviruses (FALPE). Baculoviruses, on the other hand, yield filaments in the nuclei and cytoplasm of the infected cell which are composed of a protein called p10. Despite significant differences in their sequences, FALPE and p10 have similar hydrophilicity profiles, and each has a proline-rich stretch of amino acids at its carboxyl terminus. Evidence that FALPE and p10 could produce filaments in the absence of other viral proteins is presented. When FALPE was expressed in insect cells from a recombinant baculovirus, filaments similar to those produced by the wild-type Amsacta moorei entomopoxvirus were observed. In addition, when expression plasmids containing FALPE or p10 genes were transfected into Vero monkey kidney cells, filament structures similar to those found in infected insect cells were produced. The manner in which FALPE and p10 subunits interact to form polymers was investigated through deletion and site-specific mutagenesis in conjunction with immunofluorescence microscopy, yeast two-hybrid protein interaction analysis, and chemical cross-linking of adjacent molecules. These studies indicated that the amino termini of FALPE and p10 were essential for subunit interaction. Although deletion of the carboxy termini did not affect this interaction, it did inhibit filament formation. In addition, modification of several potential sites for phosphorylation also abolished filament assembly. We concluded that although the sequences of FALPE and p10 were different, the structural and functional properties of the two polypeptides appeared to be similar.Cytoskeletal elements have previously been demonstrated to be involved in several aspects of virus assembly (39, 66). For example, vaccinia virus has been shown to associate with actin during its release from the plasma membrane (15), while adenovirus is transported through the cytoplasm to the nucleus through its interaction with microtubules (17, 38). Actin has been implicated in the transport of baculovirus nucleocapsids to the nucleus (10). Other viruses contain actin in their envelopes along with viral surface glycoproteins, implying some role in the budding process (34, 54, 58). In addition, cytochalasin D, a disruptor of microfilaments, has been shown to impair the assembly of a number of different viruses (18, 42, 45). Most viruses use preexisting microtubule or microfilament proteins derived from host cells in these processes. However, we have recently demonstrated that insect poxviruses establish their own filament network during the later stages of infection, using a protein encoded by the viral genome (2).Entomopoxviruses (EPVs) are insect pathogens which replicate in the cytoplasm of infected cells and are members of the poxvirus family (reviewed in references 3 to 5 and 22). The genomes of these viruses consist of linear double-stranded DNA molecules which are 130 to 300 kb in length. Amsacta moorei EPV (AmEPV) can be grown in cultured insect cells and is the most studied member of this group of viruses (22–25, 27, 40, 50). AmEPV derives its name from the Indian red army worm, a larva from the Lepidoptera family and the host from which the virus was originally isolated (23, 25, 50). Baculoviruses also infect Lepidoptera larvae but instead replicate in the nuclei of their host cells (44). A number of baculoviruses have been studied, but knowledge of Autographa californica nuclear polyhedrosis virus (AcNPV), which infects a wide variety of larvae including that of the alfalfa leaf hopper, is most extensive (44). This virus is used routinely to produce recombinant proteins in insect virus expression systems (36, 44, 46, 49).A common property of EPVs and baculoviruses is the formation of large intracellular structures known as occlusion bodies which assemble during the late stages of viral infection. Virions are embedded within these occlusion bodies, and the process serves to protect the virus from the external environment. In the case of baculoviruses, the occlusion bodies are called polyhedra and are composed predominantly of a 31-kDa protein called polyhedrin (52). The occlusion bodies of EPVs are known as spheroids and consist mainly of a 110-kDa protein known as spheroidin (6, 9, 27, 55). Spheroidin and polyhedrin do not appear to exhibit sequence homology (6, 27, 52). A multilamellar envelope also appears to surround both polyhedra and spheroids and may help to stabilize these structures during assembly (2, 53).During the late phases of AmEPV and baculovirus infections, large bundles of filaments also appear to accumulate in the infected insect cells. In the case of AmEPV, these structures are present in the cytoplasm (2, 22, 23, 40), while those found in cells infected with baculoviruses reside both in the cytoplasm and in the nucleus (1, 14, 57). Baculovirus fibrils are composed primarily of a 10-kDa protein called p10 (47, 59). The p10 gene sequences from AcNPV, Orgyia pseudotsugata nuclear polyhedrosis virus (OpNPV), Bombyx mori nuclear polyhedrosis virus, Perina nuda nuclear polyhedrosis virus, Spodoptera exigua nuclear polyhedrosis virus (SeNPV), and Choristoneura fumiferana nuclear polyhedrosis virus (CfNPV) have been reported (13, 32, 35, 66–68). Although the different p10 protein sequences only exhibit 39 to 51% identity and molecules from different species cannot interact with one another, it is believed that the polypeptides must be structurally and functionally similar (61, 66). Deletion mutagenesis of AcNPV p10 has demonstrated that both the amino- and carboxy-terminal regions of this protein are necessary for the formation of filaments in the infected cell (60). Other studies have assigned an aggregation function to the amino-terminal half of p10 (63, 65), and it has been shown that this region contains a coiled-coil domain which is conserved among the different baculoviruses (66). It is tempting to speculate that p10 aggregation is the result of coiled-coil interaction, but direct evidence for this hypothesis is lacking. The precise role of the carboxy terminus of p10 is still unclear, although it has been proposed to interact with tubulin (11). Deletion of the entire p10 open reading frame (ORF) through homologous recombination produces a mutant virus which is still capable of replication both in vitro and in vivo but produces fragile polyhedra with fragmented polyhedral envelopes (26, 64, 65). The p10 protein has also been implicated in disintegration of the nuclear envelope of the host cell, and this function appears to be associated with the carboxy terminus of this protein (61, 65).Our laboratory (2) recently demonstrated that the cytoplasmic filaments, which characterize the late stages of infection by AmEPV, are composed primarily of a 156-amino-acid protein called FALPE (filament-associated late protein of EPVs). These filaments are closely associated with the spheroids and their membrane envelopes. FALPE is a phosphoprotein which migrates on sodium dodecyl sulfate (SDS)-polyacrylamide gels as a 25/27-kDa doublet. This protein also contains an unusual proline-glutamic acid repeat region spanning 20 residues in the carboxy terminus of the polypeptide. The ultrastructure and close association of this protein with the occlusion bodies of AmEPV suggested that FALPE and p10 played analogous roles during infections by the respective viruses.This article addresses the structural and functional similarities between FALPE and p10. These two viral proteins are known to be major components of filamentous structures, but it is not known whether additional viral or cellular proteins cooperate during the polymerization process. In this report, we provide insight into the mechanisms which produce filaments in cells infected with either baculoviruses or EPVs. We demonstrate that p10 and FALPE can produce filaments in the absence of other viral gene products. Using the yeast two-hybrid system and a chemical cross-linking agent, we obtained evidence for self-association of either FALPE or p10. Finally, the polypeptide regions of FALPE and p10 which are required for self-association and subsequent filament formation are mapped.     

Physicochemical Characterization of Recombinant Human Nerve Growth Factor Produced in Insect Cells with a Baculovirus Vector

Recombinant human nerve growth factor (rhNGF) secreted by insect cells was purified by ion-exchange and reversed-phase chromatography to near homogeneity. The N-terminus of the secreted molecule was analogous to that of mouse salivary gland NGF. In its native conformation, the insect cell produced rhNGF molecules were homodimers consisting of 120 amino acid polypeptide chains. Mature rhNGF was found not to be significantly glycosylated (less than 0.08 mol of N-acetylglucosamine/mol of protein). The rhNGF was homogeneous with regard to molecular weight and amino acid sequence. Isoelectric focusing resolved the rhNGF into one major and one minor component. Because rhNGF from insect cells can be obtained in large quantities, purified to near homogeneity, and is similar to natural NGF with regard to physicochemical properties and biological activity, it is suitable for further evaluation in animal models as a therapeutic molecule for neurodegenerative diseases such as Alzheimer's disease.     

Characterization of Starch-Debranching Enzymes in Pea Embryos

Two distinct types of debranching enzymes have been identified in developing pea (Pisum sativum L.) embryos using native gel analysis and tests of substrate preference on purified or partially purified activities. An isoamylase-like activity capable of hydrolyzing amylopectin and glycogen but not pullulan is present throughout development and is largely or entirely confined to the plastid. Activities capable of hydrolyzing pullulan are present both inside and outside of the plastid, and extraplastidial activity increases relative to the plastidial activity during development. Both types of debranching enzyme are also present in germinating embryos. We argue that debranching enzymes are likely to have a role in starch metabolism in the plastid of the developing embryo and in starch degradation during germination.     

Identification and Characterization of Anaplasma phagocytophilum Proteins Involved in Infection of the Tick Vector,Ixodes scapularis

Anaplasma phagocytophilum is an emerging zoonotic pathogen transmitted by Ixodes scapularis that causes human granulocytic anaplasmosis. Here, a high throughput quantitative proteomics approach was used to characterize A. phagocytophilum proteome during rickettsial multiplication and identify proteins involved in infection of the tick vector, I. scapularis. The first step in this research was focused on tick cells infected with A. phagocytophilum and sampled at two time points containing 10–15% and 65–71% infected cells, respectively to identify key bacterial proteins over-represented in high percentage infected cells. The second step was focused on adult female tick guts and salivary glands infected with A. phagocytophilum to compare in vitro results with those occurring during bacterial infection in vivo. The results showed differences in the proteome of A. phagocytophilum in infected ticks with higher impact on protein synthesis and processing than on bacterial replication in tick salivary glands. These results correlated well with the developmental cycle of A. phagocytophilum, in which cells convert from an intracellular reticulated, replicative form to the nondividing infectious dense-core form. The analysis of A. phagocytophilum differentially represented proteins identified stress response (GroEL, HSP70) and surface (MSP4) proteins that were over-represented in high percentage infected tick cells and salivary glands when compared to low percentage infected cells and guts, respectively. The results demonstrated that MSP4, GroEL and HSP70 interact and bind to tick cells, thus playing a role in rickettsia-tick interactions. The most important finding of these studies is the increase in the level of certain bacterial stress response and surface proteins in A. phagocytophilum-infected tick cells and salivary glands with functional implication in tick-pathogen interactions. These results gave a new dimension to the role of these stress response and surface proteins during A. phagocytophilum infection in ticks. Characterization of Anaplasma proteome contributes information on host-pathogen interactions and provides targets for development of novel control strategies for pathogen infection and transmission.     

Molecular Characterization and Potential Insect Vector of a Phytoplasma Associated with Garden Beet Witches' Broom in Yazd, Iran

In 2002, garden beet witches’ broom (GBWB) phytoplasma was detected for the first time in garden beet plants (Beta vulgaris L. ssp. esculenta) in Yazd, Iran. Nested polymerase chain reaction (PCR) and restriction fragment length polymorphic (RFLP) analysis of PCR‐amplified phytoplasma 16S rDNA were employed for the detection and identification of the phytoplasma associated with garden beet. A phytoplasma belonging to subgroup 16SrII‐E, in the peanut witches’ broom group (16SrII), was detected in infected plants. Asymptomatic plant samples and the negative control yielded no amplification. The result of analysis of the nucleotide sequence of a 1428 bp fragment of 16S rDNA gene from GBWB phytoplasma (GenBank accession number DQ302722 ) was basically consistent with the classification based on RFLP analysis, in which GBWB phytoplasma clustered with phytoplasmas of the 16SrII‐E subgroup. A search for a natural phytoplasma vector was conducted in Yazd in 2004, in an area where garden beet crops had been affected since 2002. The associated phytoplasma was detected in one leafhopper species, Orosius albicinctus, commonly present in this region. The leafhopper O. albicinctus was used in transmission tests to determine its vector status for the phytoplasma associated with GBWB. Two of eight plants that had been fed on by O. albicinctus, showed mild symptoms of GBWB including stunting and reddening of midveins. A phytoplasma was detected in the two symptomatic test plants by PCR using universal primers and it was identified by RFLP as the GBWB phytoplasma. This finding suggests O. albicinctus is a vector of the GBWB phytoplasma.