The influence of structural variations in the F- and FG-helix of the β-subunit modified oxyHb-NES on the heme structure detected by resonance Raman spectroscopy

The dispersion of the depolarization ratio of two prominent Raman lines (1,375 cm^–1 and 1,638 cm^–1) of oxyhemoglobin-N-ethyl succinimide have been examined for pH values between pH=6.0 and 8.5. Both exhibit a significant pH dependence. Calculation of the Raman tensor in terms of a fifth-order time dependent theory provides information about the pH-dependence of parameters reflecting symmetry classified distortions of the prosthetic heme group. To correlate these distortions with the functional properties of the molecule the following protocol was used: 1) An allosteric model suggested by Herzfeld and Stanley (1974) has been applied to O₂-binding curves measured at different pH values between 6.5 and 9.0. From this calculation one obtains both, the energy differences between different molecular conformations and the equilibrium constants of oxygen and proton binding. 2) A titration model was formulated relating each conformation of a molecule to a distinct set of distortion parameters of the heme group. 3) The distortion parameters resulting from the analysis of our Raman data were assigned as an effective value due to incoherent superposition of the distortion parameters related to the different titration states. The application of this procedure yields an excellent reproduction of the pH-dependent effective distortion parameters of both Raman lines investigated. It is shown that the protonation of two tertiary effector groups located in the -subunits affect the symmetry of the heme in a contrary manner: the protonation of a His-residue (pK=8.2, probably His(FG4)) causes a symmetric position of the proximal imidazole thus lowering the perturbations of the heme core. Further it influences the interaction between amino acid residues of the heme cavity and pyrrole side chains (probably Val (FG5)-vinyl (pyrrole 3) thus causing a decrease of the distortions related to the peripheral part of the heme. In contrast, the protonation of Lys (EF6) causes a tilt position of the proximal imidazole and an increase of asymmetric perturbations of the heme core, whereas the interaction between the pyrrole side chains and the heme cavity is weakened. Our results are consistent with stereochemical predictions of Moffat (1971) concerning the existence of an H-bond between His(FG4) and Cys(F9).Abbreviations DPR depolarization ratio - EP excitation profile - HbA human hemoglobin - oxyHb oxyhemoglobin - NEM N-ethyl-maleimide - NES N-ethyl-succimide - BME Bis (N-maleimidodimethyl)ether     

The serum proteins of the syrian hamster and the effect of corticosteroids on their fractions

Summary The normal distribution of the serum proteins, as determined by paper-electrophoresis in eighty-seven Syrian hamsters, is reported.The effect of different corticosteroids (cortisone acetate and prednisone) on the serum proteins of the hamster has also been evaluated. Cortisone acetate produced a decrease in the ₁- ₂- and -globulins, while prednisone produced a decrease in the - and -globulins, an increase in albumin and a marked hyperlipemia.

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Zusammenfassung Die normale Verteilung der Serumproteine wurde mit Papierelektrophorese in 87 Goldhamstern bestimmt.Die Wirkung verschiedener Corticosteroide (Cortisonazetat und Prednison) auf die Serumproteine des Hamsters wurde bestimmt. Cortisonazetat rief eine Abnahme der ₁- ₂- und -Globuline hervor, während Prednison eine Abnahme der - und -Globuline, eine Zunahme des Albumins und eine bedeutende Hyperlipämie hervorrief.

     

Different binding capacities of influenza A and Sendai viruses to gangliosides from human granulocytes

The structures of gangliosides from human granulocytes were elucidated by fast atom bombardment mass spectrometry and by gas chromatography/mass spectrometry as their partially methylated alditol acetates. In human granulocytes besides G_M3 (II³Neu5Ac-LacCer), neolacto-series gangliosides (IV³Neu5Ac-nLcOse₄Cer, IV⁶Neu5Ac-nLcOse₄Cer and VI³Neu5Ac-nLcOse₆Cer) containing C_24:1, and to some extent C_22:0; and C_16:0 fatty acid in their respective ceramide portions, were identified as major components. In this study we demonstrate that gangliosides from human granulocytes, the second most abundant cells in peripheral blood, can serve as receptors for influenza viruses A/PR/8/34 (H1N1), A/X-31 (H3N2), and a parainfluenza virus Sendai virus (HNF1, Z-strain). Viruses were found to exhibit specific adhesion to terminal Neu5Ac2-3Gal and/or Neu5Ac2-6Gal sequences as well as depending on the chain length of ganglioside carbohydrate backbones from human granulocytes, these important effector cells which represent the first line of defence in immunologically mediated reactions. Abbreviations: FAB-MS, fast atom bombardment mass spectrometry; GC/EIMS, gas chromatography/electron impact mass spectrometry; GSL(s) glycosphingolipids; HPTLC, high performance thin-layer chromatography; Neu5Ac,N-acetylneuraminic acid [26], PFU, plaque forming unit. The designation of the following glycosphingolipids follows the IUPAC-IUB recommendations, and the ganglioside nomenclature system of Svennerholm was used. LacCer or lactosylceramide, Gal1-4Glc1-1Cer gangliotetraosylceramide or GgOse₄Cer, Gal1-3GalNAc1-4Gal1-4Glc1-1Cer; lacto-N-tetraosylceramide or nLcOse₄Cer, Gal1-4GlcNAc1-3Gal1-4-Glc1-1Cer; lacto-N-norhexaosylceramide or nLcOse₆Cer, Gal1-4GlcNAc1-3Gal1-4GlcNAc1-3Gal 1-4-Glc1-1Cer; G_M3, II³Neu5Ac-LacCer; G_M1, II³Neu5Ac-GgOse₄Cer; G_D1a, IV³Neu5Ac, II³Neu5Ac-GgOse₄Cer; G_D1b, II³(Neu5Ac)₂-GgOse₄Cer; G_T1b, IV³Neu5Ac, II³(Neu5Ac)₂-GgOse₄Cer; G_Q1b, IV³(Neu5Ac)₂, II³(Neu5Ac)₂-GgOse₄Cer; sialyllacto-N-tetraosylceramide, IV³Neu5Ac/IV⁶Neu5Ac-nLcOse₄Cer; sialyllacto-N-norhexaosylceramide or i-active ganglioside, VI³Neu5Ac-nLcOse₆Cer.     

Biosynthesis of RNA polymerase in Escherichia coli

Summary In spite of the generally well-coordinated synthesis of RNA polymerase core enzyme subunits (, and ) in Escherichia coli, a situation was found during the growth transition from exponential to stationary phase in which this coordination was broken (the order of differential repression being ; Kawakami et al. (1979)). The present study indicates that, during a certain period of the growth transition, twice as much subunit is synthesized as subunit and the overproduced subunit accumulates as the assembly intermediate ₂ complex, which is rapidly and preferentially degraded.Two independent factors, i.e., carbon source down-shift and oxygen depletion, were examined separately for their influence on the coordinated regulation of the synthesis of RNA polymerase subunits. The depletion of glucose added as a sole carbon source was accompanied by repression of the synthesis of all core enzyme subunits, while under the same conditions the differential rate of subunit synthesis increased. In contrast, the sudden ending of the oxygen supply resulted in specific repression of the synthesis of only and subunits but not of and subunits. The latter result may be explained by the autogenous repression of the rpoBC genes by a temporal increase in the amount of unused cytoplasmic RNA polymerase.Paper XI in this series is Kawakami and Ishihama (1980)     

Biochemical documentation of allelic variation of the I-E antigens of the d,k, p,r, and u haplotypes

The extent of allelic variation of the E and E polypeptide chains of the I-E antigens from the H-2> ^d ,H-2 ^k , H-2 ^p , H-2 ^r , and H-2 ^u haplotypes is described. E and E chains were individually labeled with arginine or lysine and compared by tryptic peptide analysis. The results indicate minimum variability among the E polypeptides encoded by the d, k, p, and r haplotypes. However, the E ^u chain differed significantly from the other allelic E gene products. On the other hand, the E alleles demonstrated substantial variability with the E ^d being notably less similar to the other alleles than they are to each other. These findings are consistent with a number of observations regarding the serology and functions of the I-E antigens.Abbreviations MHC major histocompatibility complex - NMS normal mouse serum - NP-40 Nonidet P-40 - NTS 0.25% NP-40, 10 mM Tris-Cl, 0.15 M NaCl (pH 7.4) - SDS sodium dodecylsulfate - SDS-PAGE polyacrylamide gel electrophoresis in the presence of SDS     

Blood-gas,acid-base and catecholamine responses to lactic acid infusion in larval and adult Ambystoma tigrinum

Larval and adult Ambystoma tigrinum were subjected to acidosis by infusing lactic acid (2 M·g^-1) into the peritoneal cavity. Blood was sampled at intervals to establish the time-course of the ensuing acidosis. Both larvae and adults became significantly acidotic after 1 h. The larval acidosis was more pronounced (-4 pH units versus-2 pH units) than adults due to greater extracellular buffering capacity (higher [HCO₃ ^-]) in adults. Both forms recovered in about 8 h. Larvae showed a typical increase in circulating norepinephrine during the initial stages of the acidosis; adults did not, having significantly lower norepinephrine titer than larvae during the acidosis. Both larvae and adults showed transient increases in PO₂ during the acidosis. The ₁ and ₂ antagonists, timolol and butoxamine respectively, (0.2 g·g^-1) were administered to separate groups of larvae. Butoxamine (₂) delayed the recovery from the acidosis by prolonging the increase in arterial PCO₂ and reversing the recovery of [HCO₃ ^-]. Timolol (₁) did not delay recovery. We conclude that ₂ receptors are involved in the catecholamine responses to acidosis in larvae. Catecholamines appear not to play the same role in adult acid-base disturbances as they seem to in larvae.Abbreviations RBC red blood cell     

The ganglioside GD1α, IV3Neu5Ac,III6Neu5Ac-GgOse4Cer,is a major disialoganglioside in the highly metastatic murine lymphoreticular tumour cell line MDAY-D2

The aim of the present study was to investigate the ganglioside expression of the highly metastatic murine lymphoreticular tumour cell line MDAY-D2. Cells were propagated under controlled pH conditions and oxygen supply in bioreactors of 1 and 7.5l volumes by repeated batch fermentation. Gangliosides were isolated from 2.7×10¹¹ cells, purified by silica gel chromatography and separated into mono- and disialoganglioside fractions by preparative DEAE anion exchange high performance liquid chromatography. Individual gangliosides were obtained by preparative thin layer chromatography. Their structural features were established by immunostaining, fast atom bombardment and gas chromatography mass spectrometry. In addition to gangliosides of the G_M1a-pathway (G_M2, G_M1a and G_D1a) and G_M1b (IV³Neu5Ac-GgOse₄Cer) and GalNAc-G_M1b of the G_M1b-pathway, the dis8aloganglioside G_D1 (IV³Neu5Ac, III⁶Neu5Ac-GgOse₄Cer) was found in equal amounts compared to G_D1a (IV³Neu5Ac, II³Neu5Ac-GgOse₄Cer). All gangliosides were substituted with C_24:0,24:1 and C_16:0 fatty acids, sphingosine andN-acetylneuraminic acid as the sole sialic acid. Abbreviations: FAB-MS, fast atom bombardment-mass spectrometry; GC-MS, gas chromatography-mass spectrometry; GSL(s), glycosphingolipid(s); HPLC, high performance liquid chromatography; HPTLC, high performance thin layer chromatography; Neu5Ac,N-acetylneuraminic acid; Neu5Gc,N-glycoloylneuraminic acid [57]. The designation of the following glycosphingolipids follows the IUPAC-IUB recommendations [58] and the nomenclature of Svennerholm [59]. Gangliotriaosylceramide or GgOse₃Cer, GalNAc1-4Gal1-4Glc1-1Cer; gangliotetraosylceramide or GgOse₄Cer, Gal1-3GalNAc1-4Gal1-4Glc1-1Cer gangliopentaosylceramide or GgOse₅Cer, GalNAc1-4Gal1-3GalNAc1-4Gal1-4Glc1-1Cer; G_M2, II³Neu5Ac-GgOse₃Cer; G_M1a, II³Neu5Ac-GgOse₄Cer; G_M1b, IV³Neu5Ac-GgOse₄Cer; GalNAc-G_M1b, IV³Neu5Ac-GgOse₅Cer; G_D1a, IV³Neu5Ac, II³Neu5Ac-GgOse₄Cer; G_D1b, II³(Neu5Ac)₂-GgOse₄Cer; G_D1 or G_D1e, IV³Neu5Ac, III⁶Neu5AcGgOse₄Cer; G_D1e, IV³(Neu5Ac)₂-GgOse₄Cer; G_T1b, IV³Neu5Ac, II³(Neu5Ac)₂-GgOse₄Cer.     

Microbial transformation of ginsenoside Rb1 by Rhizopus stolonifer and Curvularia lunata

Of 49 microbial strains screened for their capabilities to transform ginsenoside Rb₁, Rhizopus stolonifer and Curvularia lunata produced four key metabolites: 3-O-[-d-glucopyranosyl-(1,2)--d-glucopyranosyl]- 20-O-[-d-glucopyranosyl]-3,12, 20(S)-trihydroxydammar-24-ene (1), 3-O-[-d-glucopyranosyl-(1,2)--d- glucopyranosyl]-20-O-[-d-glucopyranosyl]-3,12, 20(S)-trihydroxydammar-24-ol (2), 3-O-[-d-gluco- pyranosyl-(1,2)--d-glucopyranosyl]-3, 12, 20(S)-trihydroxydammar-24-ene (3), and 3-O--d-glucopyranosyl-3, 12, 20(S)-trihydroxydammar-24-ene (4), identified by TOF-MS, ¹H- and ¹³C-NMR spectral data. Metabolites 1, 3 and 4 were from the incubation with R. stolonifer, and 1 and 2 from the incubation with C. lunata. Compound 2 was identified as a new compound.     

Expression of neutral glycosphingolipids and gangliosides in human skeletal and heart muscle determined by indirect immunofluorescence staining

The expression of neutral glycosphingolipids and gangliosides has been studied in human skeletal and heart muscle using indirect immunofluorescence microscopy. Transversal and longitudinal cryosections were immunostained with specific monoclonal and polyclonal antibodies against the neutral glycosphingolipids lactosylceramide, globoside, Forssman glycosphingolipid, gangliotetraosylceramide, lacto-N-neotetraosylceramide and against the gangliosides G_M3(Neu5Ac) and G_M1(Neu5Ac). To confirm the lipid nature of positive staining, control sections were treated with methanol and chloroform:methanol (1:1) before immunostaining. These controls were found to be either negative or strongly reduced in fluorescence intensity, suggesting that lipid bound oligosaccharides were detected. In human skeletal muscle, lactosylceramide was found to be the main neutral glycosphinogolipid. Globoside was moderately expressed, lacto-N-neotetraosylceramide and gangliotetraosylceramide were minimally expressed and Forssman glycosphingolipid was not detected in human skeletal muscle. The intensities of the immunohistological stains of G_M3 and G_M1 correlated to the fact that G_M3 is the major ganglioside in skeletal muscle whereas G_M1 is expressed only weakly. In human heart muscle globoside was the major neutral glycosphingolipid. Lactosylceramide and lacto-N-neotetraosylceramide were moderately expressed, gangliotetraosylceramide was weakly expressed and the Forssman glycosphingolipid was not expressed at all in cardiac muscle. G_M3 and G_M1 were detected with almost identical intensity. All glycosphingolipids were present in plasma membranes as well as at the intracellular level. Abbreviations used: BSA, bovine serum albumin; DAPI, 4,6-diamidine-2-phenylindole-dihydrochloride; DTAF, fluorescein isothiocyanate derivative; GSL(s), glycosphingolipid(s); Neu5Ac,N-acetylneuraminic acid [50]; PBS, phosphate buffered saline. The designation of the following glycosphingolipids follows the IUPAC-IUB recommendations [51] and the nomenclature of Svennerholm [52]. Lactosylceramide or LacCer, Gal1-4Glc1-1Cer; gangliotriaosylceramide or GgOse₃Cer, GalNAc1-4Gal1-4Glc1-1Cer; globotriaosylceramide or GbOse₃Cer, Gall-4Gall-4Glcl-1Cer; gangliotetraosylceramide or GgOse₄Cer, Gal1-3GalNAc1-4Gal1-4Glc1-1Cer; globotetraosylceramide or GbOse₄Cer, GalNAc1-3Gal1-4Gal1-4Glc1-1Cer; lacto-N-neotetraosylceramide or nLcOse₄Cer, Gal1-4GlcNAc1-3Gal1-4Glc1-1Cer; Forssman GSL or GbOse₃Cer, GalNAc1-3GalNAc1-3Gal1-4Gal1-4Gle1-1Cer; G_M3, II³Neu5Ac-LacCer; G_M2, II³Neu5Ac-GgOse₃Cer; G_M1, II³Neu5Ac-GgOse₄Cer; G_D3 II³(Neu5Ac)₂-LacCer; G_D2, II³(Neu5Ac)₂-GgOse₃Cer; G_D1a, IV³Neu5Ac, II³Neu5Ac-GgOse₄Cer; G_D1b, II³(Neu5Ac)₂-GgOse₄Cer.     

Interconversion of F430 derivatives of methanogenic bacteria

F₄₃₀ is the prosthetic group of the methylcoenzyme M reductase of methanogenic bacteria. The compound isolated from Methanosarcina barkeri appears to be identical to the one obtained from the only distinctly related Methanobacterium thermoautotrophicum. F₄₃₀ is thermolabile and in the presence of acetonitrile or C10 _in4 ^sup- two epimerization products are obtained upon heating; in the absence of these compounds F₄₃₀ is oxidized to 12, 13-didehydro-F₄₃₀. The latter is stereoselectively reduced under H₂ atmosphere to F₄₃₀ by cell-free extracts of M. barkeri or M. thermoautotrophicum. H₂ may be replaced by the reduced methanogenic electron carrier coenzyme F₄₂₀.Abbreviations CH₃S-CoM methylcoenzyme M, 2-methylthioethanesulfonic acid - HS-CoM coenzyme M, 2-mercaptoethanesulfonic acid - F₄₃₀ Ni(II) tetrahydro-(12, 13)-corphin with a uroporphinoid (III) ligand skeleton - 13-epi-F₄₃₀ and 12,13-di-epi-F₄₃₀ the 12, 13- and 12, 13-derivatives of F₄₃₀ - 12, 13-didehydro-F₄₃₀ F₄₃₀ oxidized at C-12 and C-13 - coenzyme F₄₂₀ 7,8-didemethyl-8-hydroxy-5-deazaflavin derivative - coenzyme F₄₂₀H₂ reduced coenzyme F₄₂₀ - MV⁺ methylviologen semiquinone - HPLC high-performance liquid chromatography     

The effect of pH on kinetic and yield parameters during the ethanolic fermentation of D-xylose with Pachysolen tannophilus

We have studied the ethanolic fermentation of D-xylose with Pachysolen tannophilus in batch cultures. We propose a model to predict variations in D-xylose consumed, and biomass and ethanol produced, in which we include parameters for the specific growth rate, for the consumption of D-xylose and production of ethanol either related or not to growth.The ideal initial pH for ethanol production turned out to be 4.5. At this pH value the net specific growth rate was 0.26 h^–1, biomass yield was 0.16 g.g^–1, the cell-maintenance coefficient was 0.073 g.g^–1.h^–1, the parameter for ethanol production non-related to growth was 0.064 g.g^–1,h^–1 and the maximum ethanol yield was 0.32 g.g^–1.List of Symbols A _c Carbon atomic weight - a _d1/h Specific cell-maintenance rate defined in Eq. (8) - c Mass fraction of carbon in the biomass - E g/l Ethanol concentration - f _x Correction factor defined in Eq. (13) - f _x Correction factor defined in Eq. (13) - f _xi Correction factor defined in Eq. (14) - k _d1/h Death constant - M _E Ethanol molecular weight - M _s Xylose molecular weight - M _xi Xylitol molecular weight - m g xylose/g biomass Maintenance coefficient for substrate - m _dg xylose/g biomass Maintenance coefficient when k _d - q _Eg ethanol/g biomass. Specific ethanol production rate - s g/l Residual xylose concentration - s ₀ g/l Initial xylose concentration - t h Time - x g/l Biomass concentration - x ₀ g/l Initial biomass concentration - Y _E/sg ethanol/g xylose Instantaneous ethanol yield - ¯Y _E/sg ethanol/g xylose Mean ethanol yield - Y _E ^s/T g ethanol/g xylose Theoretical ethanol yield - Y _E ^s/* g ethanol/g xylose Corrected instantaneous ethanol yield - ¯Y _E ^s/* g ethanol/g xylose Corrected mean ethanol yield - Y _x/sg biomass/g xylose Biomass yield - ¯Y _xi/sg xylitol/g xylose Mean xylitol yield Greek Letters g ethanol/g biomass Growth-associated product formation parameter - g ethanol/g biomass.h Non-growth-associated product formation parameter - _dg ethanol/g biomass.h Non-growth-associated product formation parameter when k _d0 - h Variable defined in Eq. (6) or Eq. (7) - 1/h Specific growth rate - _m1/h Maximum specific growth rate     

Transient state analysis of biochemical reactor using coimmobilized system

The transient state analysis of the consecutive sequence of reactions S P ₁ P ₂ taking place inside a porous spherical coimmobilized biocatalyst is discussed for the case in which each step follows Michaelis Menten type kinetics. The theoretical analysis includes intraparticle diffusional limitations. The model equations are solved by the explicit finite difference method. The effect of various parameters of importance on the batch reactor performance is discussed. Comparison of the model with experimental results has been shown.List of Symbols c _p Dimensionless substrate concentration inside the particle, (s _p/ss _o) - c _{pi, j} Dimensionless substrate concentration inside the particle at i, j - c _s Dimensionless substrate concentration at the surface of the particle, (s _s/s ₀) - d _p cm particle diameter - D _s, D _p cm²/s Diffusion coefficient of the substrate S and intermediate P ₁ inside the particle respectively - h Space step size inside the particle - i Grid point inside the particle - j Grid point along the time coordinate - k Time step size - K _m1, K _m2 g/l Michaelis constants for the first and second reaction respectively - K _I1,K _I2 g/l Substrate inhibition parameters for first and second reaction respectively - P _m g/l Product inhibition parameter for the second reaction - P _1p , P _1s g/l Concentration of the intermediate inside the particle and at the surface of the particle respectively - P _2p , P _2s g/l Concentration of the product P ₂ inside the particle and at the surface of the particle respectively - p _1p Dimensionless intermediate concentration inside the particle, (p _1p/s₀) - p _1s Dimensionless intermediate concentration at the surface of the particle, (p _1s /S ₀) - P _2p Dimensionless product concentration inside the particle, (p _2p /S₀) - p _2s Dimensionless product concentration at the surface of the particle, (p _2s/S₀) - p _{1pi, j} Dimensionless intermediate concentration inside the particle at i, j - P _{2pi, j} Dimensionless product concentration inside the particle at i, j - q Ratio of diffusion coefficients, D _p/D _s - r cm Radial position inside the particle - R cm Radius of the pellet - S ₀ g/l Initial substrate concentration in the bulk liquid - S _p g/l Substrate concentration inside the particle - S _s g/l Substrate concentration at the surface of the particle - t s Time, - V _max1 g/(ls) Maximum reaction velocity for the first reaction - V _max2 g/(ls) Maximum reaction velocity for the second reaction - y Dimensionless radial distance, (r/R) - y _{1, j} Dimensionless radial distance at i, j Greek Letters ₁ Parameter, S ₀/K _m1 - ₂ Parameter, S ₀/K _m2 - _I1 Parameter, S ₀/K _I1 - _I2 Parameter, S ₀/K _I2 - _I3 Parameter, S ₀/P _m - Dimensionless time defined as (D _s t/R ²) - ₁ ² V _max1R ²/K_m1D_s - ₂ ² V _max2R ²/K_m2D_s     

One-step synthesis of n-octyl β-d-xylotrioside, xylobioside and xyloside from xylan and n-octanol using acetone powder of Aureobasidium pullulans in supercritical fluids

n-Octyl -d-xylotrioside, xylobioside and xyloside, which are effective next-generation surfactants, can be prepared by the one-step reaction of xylan and n-octanol using the acetone powder (acetone-dried cells) of Aureobasidium pullulansas the enzyme source of xylanase in supercritical carbon dioxide (CO₂) and fluoroform (CHF₃) fluids. Yields of the n-octyl glycosides were significantly increased using supercritical CHF₃, and the total yields of the n-octyl -d-glycosides exceeded 250 mg g^–1 xylan. n-Octyl -d-xylotrioside was produced only by using supercritical fluids.     

A dynamic model of a two-synapse feedback loop in the vertebrate retina

The theoretical properties of synapses such as those in the retina which operate on graded potentials are developed using work on tetrodotoxin-treated synapses as a basis. A linearized model of a two-synapse negative feedback loop analogous to the bipolaramacrine feedback loop in the retina possesses a frequency response which developes an increasingly prominent resonance peak at higher input levels and under some circumstances shows instability. Psychophysical studies have shown that the visual system also exhibits this behaviour suggestive of progressive underdamping in a harmonic oscillator. Evidence in favor of the hypothesis that resonance originates in the loop is presented, the conclusions being that the loop functions to tune the retina to a range of temporal frequencies.Symbol Table V millivolts depolarisation relative to resting membrane potential - V _n , V _out pre-synaptic, post-synaptic depolarisation respectively - V _e , V _i reversal potential or e.m.f. of post-synaptic battery of excitatory, inhibitory synapses respectively - V _out (max) maximal post-synaptic depolarisation defined by Eq.(10c) - V ₀ input depolarisation for feedback loop - depolarisation potential normalised with respect to V _out(max) - I milliamperes of depolarising current - I _s post-synaptic membrane current - I _c cable current - I ₀ input depolarising current for feedback loop - I _max maximal physiological value for I ₀ =V _e ·G ₀ - i depolarising current normalised with respect to I_max - e reversal potential normalised with respect to V _e - r _i specific resistivity of internal medium - R _m membrane resistance - C _m membrane capacitance - cable space constant = R _m /2R _i - g ₀ characteristic cable conductance = 2/R _m ·R _i - G conductance of post-synaptic membrane - G _s maximal post-synaptic membrane conductance - g fraction of receptors occupied by transmitter = G/G _s - r the ratio G _s/G ₀ - membrane time constant = R _m·C_m - ₁ time constant of transmitter release in response to presynaptic depolarisation [Eq. (6)] - ₂ time constant of decay of g [Eq. (7a)] - _{2 2}·[1+k·exp(b·v _in)]^–1 - k equilibrium constant for transmitter-receptor interaction [Eq. (7a)] - b constant determining increase in rate of transmitter release with pre-synaptic depolarisation [Eq. (6)] - c concentration of transmitter in synaptic cleft normalised with respect to resting concentration - H _jk (s) linearised transfer function for synaptic transmission from neurone j to neurone k - G(s) H₁₂(s) - H(s) -H₂₁(s) - F(s) linearised closed-loop transfer function - _x 2 times spatial frequency of counterphase grating pattern - the ratio (1+s)/(_x)₂ - a the product (1+r)·k - d density of bipolars per unit area     

Structural characterization of a novel mono-sulfated gangliotriaosylceramide containing a 3-O-sulfatedN-acetylgalactosamine from rat kidney

A novel mono-sulfated glycosphingolipid based on the gangliotriaose core structure was isolated from rat kidney. The isolation procedure involved extraction of lipids with chloroform/methanol, mild alkaline methanolysis, column chromatographies with anion exchangers and silica beads. The structure was characterized by compositional analysis, FTIR spectroscopy, methylation analysis,¹H-NMR spectroscopy and negative-ion liquid secondary ion mass spectrometry (LSIMS) using the intact glycolipid and its desulfation product. The two dimensional chemical shift correlated spectroscopy provided information on the sugar sequence as well as anomeric configurations, and indicated the presence of a 3-O-sulfatedN-acetylgalactosamine within the molecule. Negative-ion LSIMS with high- and low-energy collision-induced dissociation defined the sugar sequence and ceramide composition, confirming the presence of a sulfatedN-acetylgalactosamine at the non-reducing terminus. From these results, the complete structure was proposed to be HSO₃-3GalNAc1-4Gal1-4Glc1-1Cer (Gg₃Cer III³-sulfate, SM2b). Abbreviations: Abbreviations for sulfated glycolipids [17] follow the modifications of the nomenclature system of Svennerholm for gangliosides [37], and the designation of the other glycosphingolipids follows the IUPAC-IUB recommendations [38]. Cer, ceramide; LacCer, lactosylceramide, Gal1-4Glc1-1Cer; Gg₃Cer, gangliotriaosylceramide, GalNAc1-4Gal1-4Glc1-1Cer; Gg₄Cer, gangliotetraosylceramide, Gal1-3GalNAc1-4Gal1-4Glc1-1Cer; iGb₄Cer, isoglobotetraosylceramide, GalNAc1-3Gal1-3Gal1-4Glc1-1Cer; Gb₄Cer, globotetraosylceramide, GalNAc1-3Gal1-4Gal1-4Glc1-1Cer; SM4s, galactosylceramide sulfate, GalCer I³-sulfate; SM3, lactosylceramide sulfate, LacCer II³-sulfate; SM2a, Gg₃Cer II³-sulfate; SM2b, Gg₃Cer III³-sulfate; SB2, Gg₃Cer II³,III³-bis-sulfate; SM1a, Gg₄Cer II³-sulfate; SM1b, Gg₄Cer IV³-sulfate; SB1a, Gg₄Cer II³,IV³-bissulfate; GLC, gas-liquid chromatography; GC-MS, gas chromatography-mass spectrometry; DQF, double quantum filtered; COSY, chemical-shift-correlated spectroscopy; LSIMS, liquid secondary ion mass spectrometry; CID, collision-induced dissociation; MS/MS, tandem mass spectrometry.     

Lipooligosacc haridic antigens fromMycobacterium kansasii andMycobacterium gastri

A set of Lipooligosaccharides (LOSs) has previously been characterized inM. gastri W471. The structure of the highly antigenic LOS (LOS-III) was elucidated and this molecule can unambiguously distinguishM. gastri from the opportunistic pathogenM. kansasii. In the present study, the structures of three otherM. gastri W471 LOSs were determined by one-dimensional¹H-NMR spectroscopy and gas liquid chromatography. They differ by the number of Xylp units and by the structure of the distal monosaccharide. The two dimensional (2D) NMR approach was successfully applied to the LOS antigen ofM. kansasii to locate the acetyl and acyl substituents and to determine the anomeric configuration of the -d-Fucp unit.The molecular specificity of anti-LOS-III antibodies was investigated and the LOS-III epitope was defined as the distal disaccharide: 3,6-dideoxy-4-C-(1,3-dimethoxy-4,5,6,7-tetrahydroxy-heptyl)--xylohexp-(1 3)--l-Xylp.Abbreviations CI Chemical Ionisation - COSY ¹H-¹H COrrelated SpectroscopY - COSY LR ¹H-¹H COrrelated SpectroscopY Long Range - DQF-COSY Double Quantum Filtered¹H-¹H COrrelated SpectroscopY - EI Electronic Impact - GC Gas Chromatography - HMBC Heteronuclear Multiple Bond Correlation spectroscopy - HMQC Heteronuclear Multiple Quantum Correlation spectroscopy - HOHAHA HOmonuclear HArtmann-HAhn spectroscopy - HPLC High Performance Liquid Chromatography - ³J_H.H vicinal spin-spin coupling constants - LAM LipoArabinoMannan - LOS LipoOligoSaccharide - MS Mass Spectrometry - FAB/MS Fast Atom Bombardment-Mass Spectrometry - ¹H- or¹³C- NMR proton or carbon Nuclear Magnetic Resonance - PBS Phosphate Buffered Saline - PheG1 K-I Major phenolic glycolipids fromM. kansasii - RCT-1, -2, -3 relayed coherence transfer 1 step, 2 steps, 3 steps - ROESY Rotative frame Overhauser Effect SpectroscopY - Sugars Fucp: fucopyranose - Galp galactopyranose - Glcp glucopyranose - hexp hexopyranose - Rhap rhamnopyranose - Xylp xylopyranose - TLC Thin Layer Chromatography - TMS Tri Methyl Silyl     

Stereospecific assignment of β-methylene protons in larger proteins using 3D15N-separated Hartmann-Hahn and13C-separated rotating frame Overhauser spectroscopy

Summary ³J _x coupling constants and complementary nuclear Overhauser data on the intraresidue C ^x H–CH distances form an essential part of the data needed to obtain stereospecific assignments of -methylene protons in proteins. In this paper we show that information regarding the magnitude of the³J _x coupling constants can be extracted from a semi-quantitative interpretation of relative peak intensities in a 3D¹⁵N-separated¹H–¹H Hartmann-Hahn¹H–¹⁵N multiple quantum coherence (HOHAHA-HMQC) spectrum. In addition, we demonstrate that reliable information on the intraresidue C ^x H–CH distances, free of systematic errors arising from spin diffusion, can be obtained from a 3D¹³C-separated¹H–¹H rotating frame Overhauser effect¹H–¹³C multiple quantum coherence (ROESY-HMQC) spectrum. The applicability of these experiments to larger proteins is illustrated with respect to interleukin-1, a protein of 153 residues and 17.4 kDa molecular weight.Abbreviations 1L-1 interleukin-1 - NOE nuclear Overhauser effect - ROE rotating frame Overhauser effect - HOHAHA homonuclear Hartmann-Hahn spectroscopy - NOESY nuclear Overhauser enhancement spectroscopy - ROESY rotating frame Overhauser spectroscopy - HMQC heteronuclear multiple quantum coherence spectroscopy     

Activities of growth inhibitors isolated from light-grown dwarf pea shoots

The growth inhibitory activities of 6 endogenous growth inhibitors isolated from light-grown dwarf peas (Pisum sativum cv. Progress No. 9) were examined in the epicotyl of dark-grown seedlings of the same cultivar in the dark in order to examine the possible contribution of these compounds to the growth inhibition brought about by red light. The activities of these natural inhibitors, including two A-2 and A-2 of as yet undetermined structure, were compared with those of synthetic growth retardants and benzyladenine. Samples were applied directly into the epicotyls via a glass capillary tube. In 24-h tests doses for a 25% inhibition (I₂₅) were: A-2, 4.3 × 10^-2: cis-xanthoxin, 1.2 × 10^-1 ; A-2, 1.6 × 10^-1; trans-xanthoxin, 1.2; R,S-dihydromaleimide, 3.5 × 10² and pisatin, 4.0 × 10² nmol plant^-1 . In 72-h tests, I₂₅'s were: benzyladenine, 1.5; AMO-1618 (ammonium-(5-hydroxycarvacryl)-trimethylchloride piperidine carboxylate), 2.4; R,S-dihydromaleimide, 4.0 × 10² and CCC (chlorocholine chloride), 1.1 × 10³ nmol plant^-1. -D-Glucosyl-R-dihydromaleimide had no activity at all. Benzyladenine caused the thickening as well as elongation inhibition of the epicotyls of intact plants. The possible involvement of A-2 and in the red light growth inhibition of dwarf peas is discussed.Abbreviations AMO-1618 ammonium-(5-hydroxycarvacryl)-trimethylchloride piperidine carboxylate - CCC chlorocholine chloride - G-DHMD -D-glucosyl-R-dihydromaleimide - I₂₅ dose required for a 25% growth inhibition - R red light author for correspondence     

An H-2 haplotype possibly derived by crossing-over between the (A α A β ) duplex and the E βlocus

The B10.STA62 strain carries the H-2 ^w27 haplotype derived from a wild mouse captured in the vicinity of Ann Arbor, Michigan. Products of two class II loci composing this haplotype, A and A , are serologically, biochemically (by tryptic peptide mapping), and functionally indistinguishable from products controlled by the A ^b and A ^/b genes of the B10.A(5R) strain. In contrast, the polypeptide chain controlled by the third class II locus, E , is different from that controlled by the E ^/b gene. This E ^/w27 chain lacks an antigenic determinant present on the E^b molecule and carries determinants lacking on the E^b molecule, the E ^/b and E ^/w27 peptide maps differ in at least six peptides, and cytotoxic T cells specific for the E ^b chains do not react with B10.STA62 target cells. This great difference between the E ^/b and E ^/w27 chains suggests that the corresponding genes have not been derived from one another by a direct mutational conversion; instead, H-2 ^w27 appears to be a recombinant haplotype derived by crossing-over between the A A duplex and the E locus. This is the first recombinant discovered separating these class II loci.     

Oxygen consumption of Astyanax fasciatus (Characidae,Pisces): a comparison of epigean and hypogean populations

Synopsis The standard and routine oxygen consumptions of Astyanax fasciatus from one surface population (Rio Teapao) and three cave populations (Chica, Micos and Pachon caves: sAnoptichthys jordani, the Micosfish and Anoptichthys antrobius) were determined individually over 24 hours by the use of a flow-through respirometer and polarographic oxygen electrodes. The phylogenetically oldest Pachon fish had a significantly lower standard metabolic rate (0.230 ± 0.036 mg O₂ g^-1 h^-1) than the epigean Teapao fish, the hybrid Chica fish and the phylogenetically younger Micos fish (0.314 ± 0.081 mg O₂g-^-1h^-1, 0.284 ± 0.048 mg O₂g^-1h^-1, 0.277 ± 0.063 mg O₂g^-1h^-1). No significant differences could be determined among the latter three populations. A significant difference in routine metabolic rate existed only between the Pachon fish (0.309 ± 0.0.56 mg O₂g^-1h^-1) and the Teapao fish (0.415 ± 0.071 mg O₂g^-1h^-1). The Chica fish (0.356 ± 0.084 mg O₂g^-1h^-1) and the Micos fish (0.355 ± 0.080 mg O₂ g^-1h^-1) could not be separated from either the Teapao or the Pachon fish, but a decreasing trend from the surface population through the Chica and the Micos to the Pachon population was obvious. During a starvation period of 29 days the metabolic rate of epigean Teapao and hypogean Pachon fish decreased significantly by 32.5% and 34.8% (standard oxygen consumption rate) and 27.5% and 28.2% (routine oxygen consumption rate), respectively. Body mass loss during the starvation period was 16.3% for the Teapao fish and 9.5% for the Pachon fish.