Species richness and endemism of birds in Bioko

The status of 50 taxonomically unique bird taxa found in Bioko is described. A complete updated species list for birds in Bioko is also given. Notes on habitat occupied and altitudinal distribution of each species as well as information on their general abundance is also included. Species distributions may have been affected by habitat modifications brought about by humans but most taxonomically unique forms are found in the montane areas. Comparisons are made with the neighbouring Mount Cameroon area.     

Modeling Spatial Trends in Estimated Species Richness using Breeding Bird Survey Data: A Valuable Tool in Biodiversity Assessment

We used data from the French breeding bird survey to estimate local bird species richness within sampled sites, using capture–recapture models. We investigated the possible effects of habitat structure and composition (landscape fragmentation, habitat cover and diversity) on estimated species richness at a local scale, and used the identified trends to help with modeling species richness at a large spatial scale. We performed geostatistical analyses based on spatial autocorrelation – cokriging models – to interpolate estimated species richness over the entire country, providing an opportunity to predict species-rich areas. We further compared species richness obtained with this method to species and rarity richness obtained using a national atlas of breeding birds. Estimated species richness was higher in species richness hotspots identified by the atlas. Combining informations on rare species from Atlas and species richness estimates from sound sampling based schemes should help with identifying species-rich areas for various taxa and locating biodiversity hotspots to be protected as high conservation value areas, especially in temperate zones where diversity hotspots are likely to match centers of high species richness because of very few centers of true endemicity.     

Norfolk Island Robins are a distinct endangered species: ancient DNA unlocks surprising relationships and phenotypic discordance within the Australo-Pacific Robins

Uncertain taxonomy hinders the effective prioritization of taxa for conservation. This problem is acute for understudied island populations in the southwest Pacific Ocean, which are increasingly threatened by habitat loss, predation and climate change. Here, we offer the first test of taxonomic limits and phylogenetic affinities of the iconic Pacific Robin radiation (Petroica multicolor) in order to prioritize the conservation of its nominotypical subspecies, the endangered Norfolk Island Robin (P. m. multicolor). We integrate phylogenetic analyses of ancient DNA and quantitative measures of plumage and morphometric variation to show that the Norfolk Island Robin should be recognized as a distinct species. Phenotypic and genetic datasets contradict the longstanding treatment of Pacific Robins (including Norfolk Island Robins) and Scarlet Robins (P. boodang) as a single species. Instead, we show that Norfolk Island Robins are deeply divergent from Scarlet Robins and have more genetic similarity to Red-capped Robins (P. goodenovii) than to other Pacific Robins. This finding is unrepresentative of the current taxonomic and conservation status of the Norfolk Island Robin, which we propose should be recognised as an endemic endangered species. Our study clearly shows that in the absence of contemporary tissues, ancient DNA approaches using historical museum specimens can address taxonomic questions that morphological traits are unable to resolve. Further, it highlights the need for similar studies of other threatened Norfolk fauna with uncertain taxonomic status in order to ensure appropriate conservation prioritization.     

Bird assemblages in pine plantations replacing native ecosystems in NW Patagonia

Forest plantations of exotic conifers represent an important economic activity in NW Patagonia, Argentina. However, there is a remarkable lack of information on the impact of forestry on native biodiversity. We analyzed the effect of Pinus ponderosa plantations on bird communities, considering different stand management practices (dense and sparse tree covers), and different landscape contexts where they are planted (Austrocedrus chilensis forest and steppe). Ultimately we wished to assess in which way plantations may be designed and managed to improve biodiversity conservation. Bird richness and abundance did not change significantly in the steppe, although community composition did, and was partially replaced by a new community, similar to that of ecotonal forests. In contrast, in the A. chilensis forest areas, species richness decreased in dense plantations, but bird community composition remained relatively constant when replacing the native forest with pine plantations. Also, in A. chilensis forest, stand management practices aiming at maintaining low tree densities permit the presence of many bird species from the original habitat. In the steppe area in turn, both dense and sparse plantations are unsuitable for most steppe species, thus it is necessary to manage them at higher scales, maintaining the connectivity of the native matrix to prevent the fragmentation of bird populations. We conclude that pine plantations can provide habitat for a substantial number of native bird species, and this feature varies both with management practices and with the landscape context of areas where afforestation occurs.     

Comparative avian phylogeography of Cameroon and equatorial Guinea mountains: implications for conservation

We illustrate the use of Faith's 'Phylogenetic Diversity' measure to compare the phylogeographic structure of two bird species with patterns of avian endemism across six mountains in Cameroon and Equatorial Guinea. The Mountain Greenbul and Cameroon Blue-headed Sunbird showed phylogeographic patterns that together defined three biogeographic regions: Bioko, Mt. Cameroon, and the northern mountains of Cameroon. In contrast, the distributions of endemic species were largely a function of geographical distance, with close mountains sharing more endemic species than distant mountains. Moreover, for both species, populations on Mt. Cameroon were distinctive with respect to the ecologically relevant character bill size. Our results, while preliminary, illustrate the utility of a comparative approach for identifying geographical regions that harbour evolutionarily distinct populations and caution against using only the distributional patterns of endemics to prioritize regions for conservation. Results show that patterns of endemism may not be concordant with patterns of phylogenetic diversity nor morphological variation in a character important in fitness. While incorporation of additional species from unrelated taxa will be necessary to draw definitive conclusions about evolutionarily distinct regions, our preliminary results suggest a conservation approach for the Afromontane region of the Gulf of Guinea that would: (i) emphasize protection of both Bioko and Mt. Cameroon, thereby maximizing preservation of within-species phylogenetic and morphologic diversity; (ii) emphasize protection within the northern mountains to further conserve intraspecific phylogenetic diversity and maximize protection of endemic species.     

Rare long-distance dispersal of the Island Night Lizard, <Emphasis Type="Italic">Xantusia riversiana</Emphasis>, maintains high diversity in a fragmented environment

The Island Night Lizard (Xantusia riversiana) is endemic to three of the Channel Islands off the coast of California, USA. Introduced species such as goats, sheep, and cats have profoundly affected the fauna and flora of the islands for over 150 years, but most of these non-native species have been recently removed. We measured the distribution of genetic diversity in Island Night Lizards across San Nicolas Island using DNA microsatellites to assess the impacts of historical habitat change on effective population size, gene flow, and population divergence; to provide baseline data for future monitoring of genetic diversity; and to provide recommendations to inform the restoration of degraded habitat. Despite a history of profound anthropogenic habitat disturbance, genetic diversity was high within sites, and there was no evidence of population bottlenecks. Divergence between sites was extraordinarily high, as expected for this sedentary species. Landscape resistance modeling using circuit theory showed that unsuitable habitat is relatively permeable to gene flow compared to suitable habitat, and yet populations separated by very short geographic distances remain genetically distinct. We found no evidence of a need for short-term intervention such as artificial translocations to maintain genetic diversity. Instead, we suggest that management should focus on maintaining, improving, and increasing habitat, especially in creating patches of habitat to link existing sites.     

Optimizing resiliency of reserve networks to climate change: multispecies conservation planning in the Pacific Northwest,USA

The effectiveness of a system of reserves may be compromised under climate change as species' habitat shifts to nonreserved areas, a problem that may be compounded when well‐studied vertebrate species are used as conservation umbrellas for other taxa. The Northwest Forest Plan was among the first efforts to integrate conservation of wide‐ranging focal species and localized endemics into regional conservation planning. We evaluated how effectively the plan's focal species, the Northern Spotted Owl, acts as an umbrella for localized species under current and projected future climates and how the regional system of reserves can be made more resilient to climate change. We used the program maxent to develop distribution models integrating climate data with vegetation variables for the owl and 130 localized species. We used the program zonation to identify a system of areas that efficiently captures habitat for both the owl and localized species and prioritizes refugial areas of climatic and topographic heterogeneity where current and future habitat for dispersal‐limited species is in proximity. We projected future species' distributions based on an ensemble of contrasting climate models, and incorporating uncertainty between alternate climate projections into the prioritization process. Reserve solutions based on the owl overlap areas of high localized‐species richness but poorly capture core areas of localized species' distribution. Congruence between priority areas across taxa increases when refugial areas are prioritized. Although core‐area selection strategies can potentially increase the conservation value and resilience of regional reserve systems, they accentuate contrasts in priority areas between species and over time and should be combined with a broadened taxonomic scope and increased attention to potential effects of climate change. Our results suggest that systems of fixed reserves designed for resilience can increase the likelihood of retaining the biological diversity of forest ecosystems under climate change.     

Breeding-habitat use by five Amazonian frogs at forest edge

Understanding patterns of speciesl habitat use and their response to dramatic changes in habitat constitutes a basis for sound conservation practice. This study examined use of breeding habitat by two rainforest-breeding frog species near primary forest edge. Nine artificial breeding pools were established along each of three transects perpendicular to continuous primary forest near Manaus, Brazil. Five frog species bred in the pools over the six-month monitoring period. For the two most abundant species, patterns of habitat use were independent of proximity to forest edge. Also,Epipedobates femoralis used pools outside the forest, in secondary growth, at the same frequency as pools inside the forest.Osteocephalus taurinus did not breed outside primary forest. These results have clear implications for conservation biology: (i) buffer zones around isolated reserves, to counter possible negative edge effects on habitat, are unnecessary for these frog species, and (ii) secondary growth habitat, which is not natural breeding habitat forE. femoralis, could serve as a source of colonists for emigration into new areas and does not represent a barrier to dispersal for this species. These results argue against generalization of edge effects for different taxa.     

Comparisons of habitat structure and plant,arthropod and bird diversity between mainland and island sites near Perth,Western Australia

Detailed estimations of habitat structure, plant species diversity and diversity of arthropods were made at six 4.0 ha sites, two on mainland Western Australia near Perth and four on adjacent islands. The number of resident passerine bird species was also recorded at each site. Plant species diversity, and horizontal foliage diversity (=patchiness) varied only slightly between sites. There were significant positive correlations between arthropod Order diversity and bird diversity, and between vertical foliage diversity and bird diversity. In both Acacia and dune scrub, the Rottnest Island sites had more individuals of arthropods than the mainland sites but these belonged to fewer Orders. Numerical imbalance between arthropod Orders on Rottnest Island probably results from diminution of predators (passerine birds) there. As the actual number of arthropods is higher on the islands, the absence of so many species of passerine birds may result from other factors (ecological and historical).     

Birds on novel island environments. A case study with the urban avifauna of Tenerife (Canary Islands)

We analyzed the variation in island bird communities of urban environments related to habitat characteristics, using regression/classification tree analyses. Data from field censuses in cities/towns representing the urban heterogeneity of the whole island were obtained in Tenerife (Canary Islands, Spain). Urban bird abundance in Tenerife was negatively affected by altitude and the cover of dry Euphorbia shrubs and positively influenced by the height and cover of the tree layer. Species richness was negatively associated with building cover and positively related to tree height and altitude. Data from field censuses in Tenerife were compared with that of similar urban environments in the mainland (Madrid Province, central Spain). Species diversity was higher in the urban sample of Tenerife than in that of Madrid and the proportion of bird species from the regional pool captured by urban environments was higher in the island than in the mainland. Nine native species and three alien species were more abundant in island urban environments than in the continent (densities, at least, 100% higher), the converse occurring for only five species. At a biogeographic scale, we conclude that the avifauna of Tenerife Island is more prone to occupy a new artificial environment than the mainland bird fauna of central Spain.     

Multilocus approach reveals an incipient differentiation process in the Stone-curlew, <Emphasis Type="Italic">Burhinus oedicnemus</Emphasis> around the Mediterranean basin

The Stone-curlew Burhinus oedicnemus, a steppe bird species, is mainly distributed in the Mediterranean and Macaronesian regions, which are considered hotspots of biodiversity with priority for animal and plant species richness conservation. In this study, we investigated the genetic diversity of the Stone-curlew in the Mediterranean basin and in the Canary Islands by applying a multilocus approach. We analysed mitochondrial and nuclear markers in order to evaluate the genetic structure and the congruence between morphological subspecies and geographic samples. We found a significant level of genetic differentiation between Mediterranean and Canary Island populations with all markers. Both in the Mediterranean basin and in the Canary Islands, we found a significant level of genetic diversity with nuclear markers only. We identified seven population groups, including insular populations. The four subspecies described for the Western Palaearctic were confirmed with some changes in distribution range. In spite of habitat fragmentation and negative population trend, the Stone-curlew showed a significant level of genetic diversity and gene flow among continental populations. However, islands constitute important reservoirs of genetic diversity and a potential for the evolution of the species.     

Elevational gradients in bird diversity in the Eastern Himalaya: an evaluation of distribution patterns and their underlying mechanisms

Background

Understanding diversity patterns and the mechanisms underlying those patterns along elevational gradients is critically important for conservation efforts in montane ecosystems, especially those that are biodiversity hotspots. Despite recent advances, consensus on the underlying causes, or even the relative influence of a suite of factors on elevational diversity patterns has remained elusive.

Methods and Principal Findings

We examined patterns of species richness, density and range size distribution of birds, and the suite of biotic and abiotic factors (primary productivity, habitat variables, climatic factors and geometric constraints) that governs diversity along a 4500-m elevational gradient in the Eastern Himalayan region, a biodiversity hotspot within the world''s tallest mountains. We used point count methods for sampling birds and quadrats for estimating vegetation at 22 sites along the elevational gradient. We found that species richness increased to approximately 2000 m, then declined. We found no evidence that geometric constraints influenced this pattern, whereas actual evapotranspiration (a surrogate for primary productivity) and various habitat variables (plant species richness, shrub density and basal area of trees) accounted for most of the variation in bird species richness. We also observed that ranges of most bird species were narrow along the elevation gradient. We find little evidence to support Rapoport''s rule for the birds of Sikkim region of the Himalaya.

Conclusions and Significance

This study in the Eastern Himalaya indicates that species richness of birds is highest at intermediate elevations along one of the most extensive elevational gradients ever examined. Additionally, primary productivity and factors associated with habitat accounted for most of the variation in avian species richness. The diversity peak at intermediate elevations and the narrow elevational ranges of most species suggest important conservation implications: not only should mid-elevation areas be conserved, but the entire gradient requires equal conservation attention.     

Surrogate species versus landscape metric: does presence of a raptor species explains diversity of multiple taxa more than patch area?

Prioritizing conservation areas is a central theme in conservation biology. The use of surrogate species and landscape metrics to identify areas with high conservation value is common. However, few studies have examined the relative efficacy of these two surrogates. In this study, we compared the efficacy of the presence/absence (PA) of a top predator (Eastern Marsh Harrier, Circus spilonotus) and wetland patch area on species richness, total abundance, and community composition of birds, plants, and small mammals, but species richness and community composition only for plants, in a fragmented wetland landscape. Although harrier PA was an effective indicator of the distribution of birds, it had no significant efficacy on the distributions of plants and small mammals. Patch area was more effective indicator of the distributions of plants and small mammals. These results suggest that surrogate species can be more effective indicators than landscape surrogates when there are ecological linkages between surrogate species and the focal taxa (e.g., similarity of habitat requirements between surrogate species and focal taxa or hetero-specific attraction). On the other hand, landscape surrogates would be useful when ecological knowledge about the relationships is limited.     

The effects of forest succession and grazing intensity on bird diversity and the conservation value of a Northern Adriatic karstic landscape

We studied the effects of different land uses on conservation value and bird diversity in a Northern Adriatic karstic landscape. Our research area was situated in SW Slovenia and was covered with dry pastures and meadows in different stages of forest sucession and with different grazing intensities. We surveyed birds in 2007 and 2012 using the line transect method, with 50.4 km being covered each year. In the analysis we divided the survey transects into 200 m tiles which were used as statistical units in the analysis. We then modelled conservation value, bird diversity and bird abundances with different land uses; we used boosted regression trees as a modelling tool. Canonical correspondence analysis showed that a distinct group of birds occurred on tiles with higher grazing intensity. The species in this group also had significantly higher abundances in 2012 than in 2007. Forest succession was the most important predictor of SPA conservation value (Special Protected Areas according to the Directive on the conservation of wild birds of the European Union) and had negative effect on it; grazing intensity had a unimodal positive influence on conservation value and was most beneficial at low intensity. The model for the European conservation value showed a rather low predictive power. Farmland bird diversity was also negatively affected by forest and positively by grazing intensity. For the four Natura 2000 species—protected species in the SPA Kras (Woodlark Lullula arborea, Red-backed Shrike Lanius collurio, Corn Bunting Emberiza calandra and Skylark Alauda arvensis), forest cover also had a negative effect. Grazing intensity had a positive effect for Woodlark, Red-backed Shrike and Skylark. The highest SPA conservation value and farmland bird diversity could therefore be achieved in a landscape with as low a forest succession as possible and grazing present but at low intensity. We recommend inclusion of appropriate measures in the agri-environment schemes (CAP pillar II) of Rural Development Programmes of the countries in the region with similar areas. The payments should be sufficiently stimulative to reopen the large areas subject to forest encroachment in the Northern Adriatic hinterland.     

BIODIVERSITY RESEARCH: Nestedness for different reasons: the distributions of birds,lizards and small mammals on islands of an inundated lake

Aim We examined whether the community compositions of birds, lizards and small mammals were nested in a fragmented landscape in the Thousand Island Lake, China. We also assessed whether the mechanisms influencing nestedness differed among these taxonomic groups. Location Thousand Island Lake, China. Methods Presence/absence matrices were compiled for birds (42 islands) and lizards (42 islands) using line‐transect methods, and for small mammals (14 islands) using live‐trapping methods from 2006 to 2009. Nestedness was analysed using BINMATNEST, and statistical significance was assessed using the conservative null model 3. We used Spearman rank correlations and partial Spearman rank correlations to examine associations of nestedness and habitat variables (area, isolation, habitat diversity and plant richness) as well as life‐history traits (body size, habitat specificity, geographical range size and area requirement) related to species extinction and immigration tendencies. Results The community compositions of birds, lizards and small mammals were all significantly nested, but the causal factors underlying nestedness differed among taxonomic groups. For birds, island area, habitat specificity and area requirement were significantly correlated with nestedness after controlling for other independent variables. For lizards, habitat heterogeneity was the single best correlate of nestedness. For small mammals, island area, habitat heterogeneity and habitat specificity were significantly correlated with nestedness. The nested patterns of birds, lizards and small mammals were not attributable to passive sampling or selective colonization. Main conclusions The processes influencing nested patterns differed among taxonomic groups. Nestedness of bird assemblages was driven by selective extinction, and lizard assemblage was caused by habitat nestedness, while nestedness of small mammals resulted from both selective extinction and habitat nestedness. Therefore, we should take taxonomic differences into account when analysing nestedness to develop conservation guidelines and refrain from using single taxa as surrogates for others.     

Are protected areas maintaining bird diversity?

Evaluating the effectiveness of protected areas for sustaining biodiversity is crucial to achieving conservation outcomes. While studies of effectiveness have improved our understanding of protected‐area design and management, few investigations (< 5%) have quantified the ecological performance of reserves for conserving species. Here, we present an empirical evaluation of protected‐area effectiveness using long‐term measures of a vulnerable assemblage of species. We compare forest and woodland bird diversity in the Australian Capital Territory over 11 yr on protected and unprotected areas located in temperate eucalypt woodland and matched by key habitat attributes. We examine separately the response of birds to protected areas established prior to 1995 and after 1995 when fundamental changes were made to regional conservation policy. Bird diversity was measured in richness, occurrence of vulnerable species, individual species trajectories and functional trait groups. We found that protected areas were effective in maintaining woody vegetation cover in the study region, but were less effective in the protection of the target bird species assemblage. Protected areas were less species rich than unprotected areas, with significant declines in richness across sites protected prior to 1995. Small, specialised and vulnerable species showed stronger associations with unprotected areas than protected areas. Our findings indicate that recently established reserves (post‐1995) are performing similarly to unprotected woodland areas in terms of maintaining woodland bird diversity, and that both of these areas are more effective in the conservation of woodland bird populations than reserves established prior to 1995. We demonstrate that the conservation value of protected areas is strongly influenced by the physical characteristics, as well as the landscape context, of a given reserve and can diminish with changes in surrounding land use over time. Both protected areas and off‐reserve conservation schemes have important roles to play in securing species populations.     

An integrative species delimitation approach reveals fine-scale endemism and substantial unrecognized avian diversity in the Philippine Archipelago

The Philippine archipelago is recognized as a biodiversity hotspot because of its high levels of endemism and numerous threatened species. Avian lineages in the Philippines feature morphologically distinct allopatric taxa, which have been variably treated either as species or subspecies depending on species concepts and recognition criteria. To understand how alternative species limits would alter diversity metrics and patterns of endemism in the Philippines, we selected 19 focal lineages of birds, each containing multiple described taxa within the Mindanao Island Group. We delimited species in an integrative, lineage-based framework using three operational criteria: species must (1) form well-supported, geographically circumscribed clades, (2) be monophyletic with significant genetic differentiation identified by a coalescent model, and (3) feature fixed differences in phenotypic characters. Our criteria identified 40 species from the original 19 focal lineages, a 50–74% increase over recent comprehensive taxonomic treatments. Genetic criteria in isolation identified an additional 10 populations that could be cryptic species in need of further study. We identified fine-scale endemism within the Mindanao Island Group, with multiple unrecognized avian endemics restricted to Samar/Leyte, Bohol Island, and the Zamboanga Peninsula. Genetic and phenotypic information support the hypothesis that polytypic bird species in the Philippines tend to be composed of evolutionarily distinct, range-restricted, allopatric replacements rather than widespread and variable “superspecies”. We conclude that lack of species recognition has resulted in underestimates of species diversity and overlooked fine-scale endemism in the Philippines. Recognizing this diversity would alter conservation priorities, shifting efforts to protect microendemics on smaller islands and finer scale endemic areas within larger islands.     

Bird diversity in cacao farms and forest fragments of western Panama

Theobroma cacao plantings, when managed under the shade of rainforest trees, provide habitat for many resident and migratory bird species. We compared the bird diversity and community structure in organic cacao farms and nearby forest fragments throughout mainland Bocas del Toro, Panama. We used this dataset to ask the following questions: (1) How do bird communities using cacao habitat compare to communities of nearby forest fragments? (2) To what extent do Northern migratory birds use shaded cacao farms, and do communities of resident birds shift their abundances in cacao farms seasonally? (3) Do small scale changes in shade management of cacao farms affect bird diversity? Using fixed radius point counts and additional observations, we recorded 234 landbird species, with 102 species that were observed in both cacao and forest fragments, 86 species that were only observed in cacao farms, and 46 species that were restricted to forest fragments. Cacao farms were rich in canopy and edge species such as tanagers, flycatchers and migratory warblers, but understory insectivores were nearly absent from cacao farms. We observed 27 migratory species, with 18 species in cacao farms only, two species in forest only, and seven species that occurred in both habitats. In cacao farms, the diversity of birds was significantly greater where there was less intensive management of the canopy shade trees. Shade tree species richness was most important for explaining variance in bird diversity. Our study shows that shaded cacao farms in western Panama provide habitat for a wide variety of resident and migratory bird species. Considering current land use trends in the region, we suggest that action must be taken to prevent conversion away from shaded cacao farms to land uses with lower biodiversity conservation value.     

Ants and plants as indicators of biodiversity,ecosystem services,and conservation value in constructed grasslands

Grasslands are constructed for soil and wildlife conservation in agricultural landscapes across Europe and North America. Constructed grasslands may mitigate habitat loss for grassland-dependent animals and enhance ecosystem services that are important to agriculture. The responses of animal species richness and abundance to grassland habitat quality are often highly variable, however, and monitoring of multiple taxa is often not feasible. We evaluated whether multiple animal taxa responded to variation in constructed grassland habitats of southwest Ohio, USA, in ways that could be predicted from indicators based on quality assessment indices, Simpson diversity, and the species richness of ants and plants. The quality assessment indices included a widely used Floristic Quality Assessment (FQA) index, and a new Ant Quality Assessment (AntQA) index, both based on habitat specificity and species traits. The ant and plant indicators were used as predictor variables in separate general linear models of four target taxa—bees, beetles, butterflies and birds—with response variables of overall species richness and abundance, and subsets of taxa that included the abundance of ecosystem-service providers and grassland-associated species. Plant Simpson diversity was the best-fitting predictor variable in models of overall bee and beetle abundance, and the abundance of bees classified as ecosystem-service (ES) providers. FQA and plant richness were the best predictors of overall butterfly species richness and abundance. Ant species richness was the best predictor of overall bird species richness and abundance as well as the abundance of ES birds, while the AntQA index was the best predictor for the abundance of grassland bird and butterfly species. Thus, plant Simpson diversity and ant species richness were the most effective indicators for complementary components of grassland animal communities, whereas quality assessment indices were less robust as indicators and require more knowledge on the habitat specificity of individual ant and plant species.