Evolution and present situation of the South American Camelidae

This paper provides a review of South American camelid evolution, classification and present status. Particular attention is paid to the debate concerning origins of the domestic alpaca and llama and the contribution of research on faunal remains from Andean archaeological sites towards resolving this issue. Changes in incisor morphology during the domestication process suggest that the alpaca may be descended from the vicuna, while a comparison of fibre production characteristics in preconquest and extant llama and alpaca breeds indicates that extensive hybridization between the two species is likely to have occurred since European contact. The potential role of hybridization in the formation of extant South American camelid populations has not been studied, and may be the root cause of taxonomic disputes.     

Genetic analysis reveals the wild ancestors of the llama and the alpaca.

The origins of South America's domestic alpaca and llama remain controversial due to hybridization, near extirpation during the Spanish conquest and difficulties in archaeological interpretation. Traditionally, the ancestry of both forms is attributed to the guanaco, while the vicu?a is assumed never to have been domesticated. Recent research has, however, linked the alpaca to the vicu?a, dating domestication to 6000-7000 years before present in the Peruvian Andes. Here, we examine in detail the genetic relationships between the South American camelids in order to determine the origins of the domestic forms, using mitochondrial (mt) and microsatellite DNA. MtDNA analysis places 80% of llama and alpaca sequences in the guanaco lineage, with those possessing vicu?a mtDNA being nearly all alpaca or alpaca-vicu?a hybrids. We also examined four microsatellites in wild known-provenance vicu?a and guanaco, including two loci with non-overlapping allele size ranges in the wild species. In contrast to the mtDNA, these markers show high genetic similarity between alpaca and vicu?a, and between llama and guanaco, although bidirectional hybridization is also revealed. Finally, combined marker analysis on a subset of samples confirms the microsatellite interpretation and suggests that the alpaca is descended from the vicu?a, and should be reclassified as Vicugna pacos. This result has major implications for the future management of wild and domestic camelids in South America.     

Interaction of allosteric effectors with alpha-globin chains and high altitude respiration of mammals. The primary structure of two tylopoda hemoglobins with high oxygen affinity: vicuna (Lama vicugna) and alpaca (Lama pacos)

Polyacrylamide gel electrophoresis and ion-exchange chromatography revealed one hemoglobin component for vicuna (Lama vicugna) and alpaca (Lama pacos). Following chain separation by chromatography on carboxymethyl-cellulose, the amino-acid sequences were elucidated for the alpha- and beta-chains of both hemoglobins using automatic Edman degradation of the chains and the tryptic peptides. Vicuna and alpaca have identical beta-chains showing no substitutions to llama (Lama glama) either. In the alpha-chains alpaca differs from llama by the exchange of one amino-acid residue: alpha 122(H5)Asp----His. The same substitution is present in vicuna too, but in addition we found two more exchanges: alpha 10(A8)Ile----Val and alpha 130(H13)Ala----Thr. The close relationship between llama and alpaca suggests that they both originate from the wild guanaco, and there is no domesticated form of vicuna. The sequence data show that the higher oxygen affinity in vicuna compared to llama and alpaca must be due to the alpha-chains as the beta-chains are identical. The significance of the substitutions in alpha 122(H5), an alpha 1/beta 1-contact, and alpha 130(H13) is discussed.     

New polymorphic microsatellite loci for different camel species

New microsatellite loci were screened and sequenced from the genomic DNA of male Camelus bactrianus. Among 32 loci, 23 were amplified in bactrian and dromedary species, 19 in llama and 20 in alpaca. The different species had similar fragment lengths per locus, with more striking similarities between bactrian and dromedary and between llama and alpaca, respectively. Seven loci had more than 10 alleles each, nine were monomorphic in all species, and one was monomorphic in Old World and polymorphic in New World camels. The results show that the informative microsatellite loci can be widely applied to several species.     

Hair follicle characteristics and fibre production in South American camelids

Hair follicle and fibre characteristics of Peruvian alpaca and llama and Bolivian llama were analysed in three experimental studies. The first experiment was designed to determine the age at which all the secondary follicles reach maturity, as well as to compare the skin follicular structure and activity among these different types of Peruvian camelids. It is concluded that the South American camelids investigated in this study gained a complete and mature skin follicle apparatus at an early age, and hence producers should practise an early first shearing. A second Peruvian experiment investigated comparative fibre cuticular structure on twenty Peruvian domestic camelids comprising huacaya, suri and llama (woolly) 'chacos' genotypes. The results showed that the number of cuticular scales per 100 μm fibre length proved to be strongly affected by both the fleece type and the fibre diameter. The suri fleece was clearly differentiated from those of both huacaya and llama by possessing the highest percentage of fibres with a number of scales less than eight, the lowest percentage of fibres with more than nine scales, along with the lowest percentage of fibres with a diameter of more than 35 μm. It is concluded that, with the exception of the scale height, the cuticular parameters investigated in this study can be utilised in textile fibre analyses for distinguishing among these three types of fleece, as well as in selection projects designed to produce homogeneous fibres from Peruvian domestic camelids. A further study was conducted to determine the age at which the hair follicles in Bolivian llamas reach maturity as well as for comparing the skin follicular structure and activity between the two distinct genotypes. Thirty-one llama kids were chosen. They were born between January and April 1998 and were of different sex and of 'Q'aras' (or Carguera) or 'T'amphullis' type. Skin biopsies were taken from the right mid-costal region at 2, 4, 6, 8,10,12 and 14 months of age in order to monitor four follicular parameters. In this experiment, secondary to primary (S/P) data show that the Bolivian llama population analysed possessed a complete and mature skin follicle apparatus at birth that remained essentially constant throughout the investigation period. Due to the variation of these traits inside the same genetic population, the present results showed that T and Q types could only be subjective on the basis of S/P ratio.     

Ag-NOR staining and in situ hybridization of rDNA in the chromosomes of the South American camelids

The location and frequency of Ag-stained NORs and sites of rDNA hybridization were studied in the chromosomes of the South American camelids. In the four camelids these regions occur distally on chromosomes 18, 21, and 27 and the smallest biarmed elements. Quantitative analysis of NOR distribution showed variations between both cells and species. In llama, guanaco and alpaca the NORs number averaged 6 per cell, this being higher than in vicuña where the average was 3. Relative frequencies of NOR-bearing chromosomes in the four camelids were similar. Yet, in vicuña the virtual absence of NOR sites on one of the smallest biarmed pairs was observed. The rDNA sites assessed in llama and vicuña by in situ hybridization with cloned 18S DNA were coincident with the NOR locations and with the frequencies characteristics for each species. Moreover, varying the exposure time of the autoradiographs, labeling patterns specific for each camelid were observed. Grain counts on individual chromosomes indicated that under our conditions one month exposure is enough to demonstrate all the rDNA sites available in the complement of llama. Conversely, at least two months are necessary to show the total sites existing in vicuña. Most probably this finding reflects the presence of variations in the amount of copies of the ribosomal genes per chromosome.     

DNA composition in South American camelids I. Characterization and in situ hybridization of satellite DNA fractions

The DNA composition and the in situ hybridization of satellite fractions were analysed in the New World camelids llama, alpaca, guanaco and vicuña. In the four camelid forms, it was possible to identify a similar main band DNA and five satellite fractions (I–V) with G+C base contents ranging from 32% to 66%. Satellites II–V from llama were in situ reannealed on chromosomes from the four camelid forms. The results obtained were: (a) the four satellites hybridized with regions of C-banding (centromeric regions of all chromosomes and short arms of some autosomes); (b) in general, homologous hybridizations (llama DNA versus llama chromosomes) were more efficient than heterologous reassociations; there were however three exceptions to this rule (vicuña and alpaca satellite fraction II, chromosome group B; vicuña fraction V, chromosome groups A and B); (c) X chromosomes from the four camelids had satellites III–V but lacked satellite II, (d) no satellite fraction was detected on chromosome Y. The analysis of the in situ hybridization patterns allowed to conclude that most or all C-banded chromosome regions comprise several satellite DNA fractions. It is, moreover, proposed that there is an ample interspecies variation in the number of chromosomes that cross-react with a given satellite fraction. Our data give further support to the close genomic kinship of New World camelids.     

Journey from Wilderness: Facing Dilemmas of Wild Animal Exhibits

Wild animal trade, including capture and transport of animals from faraway lands to European and American markets for public exhibition, became a well-established business by the nineteenth century. Journey by animals to the destination in rudimentary conditions caused high mortality. This is an area in history that receives scant attention today. Also, husbandry technology in zoos was in dire need of improvement in earlier years. It is easy for us to condemn the work of yesteryear by using today's prism, an act called “Presentism”. Instead, we should review the deed of our predecessors in historical perspective; judging them by today's moral standard will not get us anywhere. In early day America, traveling menageries first introduced the public to captive wild animals before zoos developed as civic institutions in increasingly urban societies. During the era, the division of circuses, menageries and zoos often blurred. This essay attempts to present a holistic review of wild animal exhibition operations including traveling menageries, circuses and zoos, focusing on selected topics from the eighteenth century through the middle of the last century. Today, even with tremendous contributions having been made, zoos still face considerable challenges in terms of wildlife conservation.     

Mitochondrial DNA structure and organization of the control region of South American camelids

This work presents the mitochondrial DNA molecular organization of the control region (CR) of South American camelids. Sequencing of five individuals each of guanaco, llama, alpaca and vicuna species showed that this region spans 1060 bp including three conserved sequence blocks (CSB I–III) adjacent to the tRNAPhe gene, a conserved central domain and one extended termination‐associated sequence in the 3′ domain of the CR close to the tRNAPro gene. A repeated array formed by three units of 26 bp was detected between CSB I and II. Alignment of the CR sequences from the four species shows a 337‐bp segment that includes most of the nucleotide variability with 10 polymorphic sites. We suggest the use of this segment as a molecular marker to infer data on camelid genetic relationships and population diversity studies.     

Prediction of gestational age by ultrasonic fetometry in llamas (Lama glama) and alpacas (Lama pacos)

Fetal biparietal diameter (BPD) and thorax height (TH) were measured by ultrasound during intrauterine growth in pregnant llamas (Lama glama) and alpacas (Lama pacos). The goal was to establish representative curves that allows estimation of gestational age (GA) from real-time ultrasonic measurements of these fetal structures at any stage of gestation. Llamas and alpacas were mated under controlled conditions. Ultrasound exams were conducted to determine pregnancy status 1 month later. Measurements of fetal BPD and TH were conducted from the second month of pregnancy until term. Observation and assessment of fetal TH was difficult during the last 3 months of pregnancy, specially in llamas. Regression curves were calculated from the data as a function of GA, with the best fit represented by the following equations: llama GA=(BPD-0.002399)43.02293,r=0.98,P<0.001; llama GA=(TH-0.07137)46.94485, r=0.95,P<0.001; alpaca GA=(BPD-0.11376)47.23287, r=0.98,P<0.001; alpaca GA=(TH-0.36436)52.87663, r=0.96,P<0.001, where GA was measured in days and BPD and TH in centimeters. Results indicate that ultrasonic measurement of these fetal biometric variables constitute a valuable tool to estimate GA at any stage of pregnancy in these domestic South American camelids.     

Programs for invasive research in North American zoos and aquariums

Zoo-based research in North America is an emerging field, which has progressed from an ad hoc approach in a small number of zoos to a coordinated, integrated network of scientists with recognized research programs in approximately one half of the accredited institutions in North America. The disciplines most active in these programs--veterinary medicine and pathology, nutrition, reproductive biology, contraception, and behavior--are now becoming coordinated in zoos through Scientific Advisory Groups. Zoos with research programs generally establish either an institutional animal care and use committee or another committee to evaluate research proposals. In addition to scientific merit and experimental design, zoos evaluate proposals based on factors such as priority by conservation program/identified need; direct effect on species conservation, species type, and appropriateness; availability and location of animals; operational requirements/logistics; communication between institutions; and available funding. Euthanasia is considered only in rare circumstances. Zoo-based research has evolved into an integral component in animal management and conservation programs by providing practical information that is used to improve animal care, well-being, health, and reproduction. However, the degree to which zoos participate in invasive research varies considerably among institutions, due not only to resource limitations but also to how the term "invasive" is defined and accepted at each institution. A more standardized approach among zoological institutions for examining and approving research projects that are supported by zoo-based conservation programs would greatly facilitate the wildlife research efforts of North American zoos.     

Simple sequence repeats for genetic studies of alpaca

Trace sequences from the 2X alpaca genome sequencing effort were examined to identify simple sequence repeats (microsatellites) for genetic studies. A total of 6,685 repeat-containing sequences were downloaded from GenBank, processed, and assembled into contigs representing an estimated 4,278 distinct sequences. This sequence set contained 2,290 sequences of length > 100 nucleotides that contained microsatellites of length > or = 14 dinucleotide or 10 trinucleotide repeats with purity equal to 100%. An additional 13 sequences contained a GC microsatellite of length > or = 12 repeats (purity = 100%) were also obtained. Primer pairs for amplification of 1,516 putative loci are presented. Amplification of genomic DNA from alpaca and llama by PCR was demonstrated for 14 primer sets including one from each of the microsatellite repeat types. Comparative chromosomal location for the alpaca markers was predicted in the bovine genome by BLAT searches against assembly 4.0 of the bovine whole genome sequence. A total of 634 markers (41.8%) returned BLAT hits with score > 100 and Identity > 85%, with the majority assignable to unique locations. We show that microsatellites are abundant and easily identified within the alpaca genome sequence. These markers will provide a valuable resource for further genetic studies of the alpaca and related species.     

Traditional livestock activities modify the spatial behavior of small wildcats in the high Andes

Human activities lead to declines in species’ abundance and diversity, as well as loss of habitat quality from overexploitation. The effects of livestock grazing increase on small felids are poorly understood, primarily due to the low detectability of these species. The grazing of domestic camelids, such as the llama (Lama glama) and the alpaca (Vicugna pacos), is the main traditional source of income for the inhabitants of the Andes, where the Andean cat (Leopardus jacobita) and Pampas cat (L. colocolo) are also present. In this study, we employ camera trap data to evaluate the association of llama and alpaca grazing with occupancy by the Andean and Pampas cat in Sajama National Park. In each of 36 sampling stations, we installed a camera trap, a grid of traps for rodents and two habitat transects along a gradient of intensity of livestock grazing. Occupancy models showed that negative effect of camelid abundance was stronger for the Andean cat than the Pampas cat. For both species, occupancy was also associated positively to the abundance of prey, proximity to water bodies, and vegetation. Given that livestock activity is a way of life for human populations in the Andes, we suggest that mechanisms should be implemented to compensate for the negative effects of livestock on Andean and Pampas cat populations.     

Rambling Thoughts on Zoo Animal Collection and Conservation: A Historical Perspective

Zoo animal collections have gone through a variety of changes in recent decades. While an increasing number of species may be establishing self-sustainable populations, early specimens of some animal groups were captured and transported in wasteful and unacceptable methods, a part of history that should not be forgotten. Selection of species has shifted from individual to group decision-making processes, reflecting a different type of personnel now in charge. The fact remains, however, that zoos continue to present a popularity-driven, skewed representation of the animal kingdom to the public. Wildlife conservation has been one of the main purposes for zoos as well as zoo associations, both in Europe and America. In actuality, the concept of conservation is subject to individual interpretation and this is where a clear definition of the zoos’ role could become rather vague. An important and worthwhile task for zoos is conservation education. To counteract deep-rooted anthropomorphism in the public's mind is not easy, yet it is a necessary step to raise citizens’ environmental awareness. The ultimate results of conservation education include changing daily habits, as well as participation in grass-roots conservation movements, by citizens.     

Ethics and animal welfare evaluations in South East Asian zoos: a case study of Thailand

Concern for zoo animals is palpable throughout society in many countries in South East Asia. It is important to understand problems of animal welfare in order for zoos to make significant improvement in maintaining high standards. With a case study of 3 zoos in Thailand, this article presents results for the first time on how ethics and welfare evaluations are conducted in South East Asian zoos. The study identified several major and minor welfare problems and provided constructive suggestions to zoo authorities, which in turn significantly improved the standards of animal welfare. Thus, the data presented in this article could serve as a model for other zoos to follow animal welfare evaluations locally, regionally, and globally.     

Y‐chromosome and mtDNA variation confirms independent domestications and directional hybridization in South American camelids

Investigations of genetic diversity and domestication in South American camelids (SAC) have relied on autosomal microsatellite and maternally‐inherited mitochondrial data. We present the first integrated analysis of domestic and wild SAC combining male and female sex‐specific markers (male specific Y‐chromosome and female‐specific mtDNA sequence variation) to assess: (i) hypotheses about the origin of domestic camelids, (ii) directionality of introgression among domestic and/or wild taxa as evidence of hybridization and (iii) currently recognized subspecies patterns. Three male‐specific Y‐chromosome markers and control region sequences of mitochondrial DNA are studied here. Although no sequence variation was found in SRY and ZFY, there were seven variable sites in DBY generating five haplotypes on the Y‐chromosome. The haplotype network showed clear separation between haplogroups of guanaco–llama and vicuña–alpaca, indicating two genetically distinct patrilineages with near absence of shared haplotypes between guanacos and vicuñas. Although we document some examples of directional hybridization, the patterns strongly support the hypothesis that llama (Lama glama) is derived from guanaco (Lama guanicoe) and the alpaca (Vicugna pacos) from vicuña (Vicugna vicugna). Within male guanacos we identified a haplogroup formed by three haplotypes with different geographical distributions, the northernmost of which (Peru and northern Chile) was also observed in llamas, supporting the commonly held hypothesis that llamas were domesticated from the northernmost populations of guanacos (L. g. cacilensis). Southern guanacos shared the other two haplotypes. A second haplogroup, consisting of two haplotypes, was mostly present in vicuñas and alpacas. However, Y‐chromosome variation did not distinguish the two subspecies of vicuñas.     

青年羊驼耳部和背部皮肤组织中miRNA差异表达研究

羊驼是毛用型经济动物,其耳部和背部的毛发品质和生长速度存在差异.MicroRNA(miRNA)是新发现的一类在转录后水平调控基因表达的非编码RNA分子,为比较miRNA在羊驼耳部和背部皮肤的表达差异,从而探讨miRNA在羊驼皮肤和毛囊发育过程中的调控作用,本实验提取羊驼皮肤总RNA,制备了羊驼皮肤miRNA芯片,通过与Affymetrix多物种miRNA芯片跨物种杂交对耳部和背部皮肤的miRNA进行筛选,并通过实时荧光定量PCR进行了验证,同时利用在线生物信息软件预测miRNA靶基因.结果显示,羊驼耳部和背部皮肤中高表达差异2倍以上的miRNA有39个,实时荧光定量PCR检测let-7b和miR-24在2个部位皮肤中的差异表达量与miRNA基因芯片结果一致;预测到let-7b和miR-24的靶基因中包含有与毛囊生长发育和毛发品质相关的基因,提示这些miRNA可能参与羊驼皮肤和毛囊的生长发育、更新以及毛发品质的调控.     

A survey of research in American zoos and aquariums

A 26-item questionnaire was distributed to 153 American zoos, aquariums, and animal parks. A response rate of 78% was achieved after a second mailing. The results indicate that most zoos encourage research and have engaged in recent research activities of some type. Behavioral and reproductive research are the most common types of scientific activity, while nonprimate mammals are the most likely research subjects. Research activity is correlated with attendance and with academic affiliations. Nearly half of the institutions surveyed reported that their research efforts were expanding.     

FGF5在青年羊驼背部和耳部皮肤中的表达和定位

羊驼是毛用型经济动物,其耳部和背部的毛发品质和生长周期存在差异. 据研究成纤维细胞生长因子5（fibroblast growth factor 5, FGF5）在多种哺乳动物中影响毛发长度. FGF5基因的突变导致小鼠、狗和猫隐性的长发表型,其也参与了家兔绒毛长度的变异. 本实验旨在研究FGF5在青年羊驼皮肤中的表达和定位,以及在羊驼背部和耳部皮肤中的差异比较,探讨其在羊驼毛发生长发育过程中的作用及其相关机制. 实验采用实时荧光定量PCR、Western印迹和免疫组织化学等技术,对FGF5在青年羊驼背部和耳部皮肤中的mRNA、蛋白表达水平和定位进行了研究. 实时荧光定量PCR结果显示,FGF5在青年羊驼耳部皮肤组织中相对基因表达量是羊驼背部皮肤组织的25265倍(P<001); Western印迹结果显示,羊驼皮肤组织粗蛋白提取物中存在与兔抗FGF5多克隆抗体发生免疫阳性反应的蛋白条带,羊驼耳部皮肤平均蛋白表达量显著高于背部;免疫组织化学结果显示,FGF5在羊驼皮肤的毛根鞘,毛母质细胞和毛髓质等部位均表达,根据光密度值得出,该蛋白在羊驼背部和耳部皮肤中的表达差异极显著（P<001）. 试验结果提示FGF5可能抑制了羊驼毛发的生长.     

A visit to the zoos and aquariums in Northern Japan

For their trip to the National Parks in Hokkaido the authors also included in their schedule visits to the zoos and aquariums in Northern Japan. Their tight scheduled tour started at the Aquamarine Fukushima, which was after the large tsunami rebuilt and re-opened in July 2011. They continued with a visit to the Kamo Aquarium, which is famous for its unique and large jellyfish exhibition. On Hokkaido Island they visited the smaller zoos in Kushiro and Obihiro with a good collection of native Hokkaido animal species. Included was also the Asahiyama Zoo, which is at the moment one of the most popular zoos in Japan. It is well-known for its innovative enclosures for seals and penguins. The Sapporo Maruyama Zoo and the Chitose Salmon Aquarium were the last highlights of this tour. The themes and animal collections of these different zoos and aquariums are described. The general situation for the northern zoos and aquariums is quite different compared to the institutions in the southern parts of the country and entirely to the zoos in the large city areas like Tokyo, Osaka and Nagoya. Here in the northern zoos and aquariums many native animal species and subspecies are kept and often successfully bred.