共查询到20条相似文献,搜索用时 31 毫秒
1.
Use of FT-IR Spectra and PCA to the Bulk Characterization of Cell Wall Residues of Fruits and Vegetables Along a Fraction Process 总被引:1,自引:0,他引:1
This study focuses on the analysis of polysaccharide residues from the cell walls of fruits and vegetables: tomato, potato, pumpkin, carrot and celery root. An alcohol-insoluble residue was prepared from plant material by extraction using the hot ethyl alcohol method and then cell wall fractions soluble in trans-1,2-diaminocyclohexane-N,N,N′,N′-tetraacetate, sodium carbonate and alkaline solution were sequentially extracted. Infrared spectroscopy combined with Fourier transform (FT-IR) was used to evaluate differences among cell wall residues and among species after each step of sequential extraction of pectins and hemicelluloses. Additionally, pectic substances were identified using an Automated Wet Chemistry Analyser. Principal component analysis (PCA) was applied to FT-IR spectra in two regions: 1,800–1,200 cm?1 and 1,200–800 cm?1 in order to distinguish different components of cell wall polysaccharides. This method also allowed us the possibility of highlighting the most important wavenumbers for each type of polysaccharide: 1,740, 1,610 and 1,240 cm?1 denoting pectins or 1,370 and 1,317 cm?1 denoting hemicelluloses and cellulose, respectively. 相似文献
2.
Organic soiling is a major issue in the food processing industries, causing a range of biofouling and microbiological problems. Energy dispersive X-ray (EDX) and Fourier transform infra red spectroscopy (FT-IR) were used to quantify and determine the biochemical groups of food soils on stainless steel surfaces. EDX quantified organic material on surfaces where oily based residues predominated, but was limited in its usefulness since other food soils were difficult to detect. FT-IR provided spectral ‘fingerprints’ for each of the soils tested. Key soiling components were associated with specific peaks, viz. oils at 3025 cm?1–3011 cm?1, proteins at 1698 cm?1–1636 cm?1 and carbohydrates at 1658 cm?1–1596 cm?1, 783 cm?1–742 cm?1. High concentrations of some soils (10%) were needed for detection by both EDX and FT-IR. The two techniques may be of use for quantifying and identifying specific recalcitrant soils on surfaces to improve cleaning and hygiene regimes. 相似文献
3.
Eun Yee Jie Myung Suk Ahn Young Pyo Lee Soon Kee Sung Byung Whan Min Jang Ryol Liu Suk Weon Kim 《Plant biotechnology reports》2018,12(3):217-228
The purpose of this study is to establish the rapid discrimination system of cybrid callus lines by Fourier transform infrared (FT-IR) spectroscopy without genetic fingerprinting analysis. Genomic DNA isolated from two parental lines (Brassica oleracea var. capitata and Raphanus sativus L.) and their cybrid callus lines were analyzed by FT-IR spectroscopy in the spectral region from 4000 to 400 cm?1. Several spectral differences between the two parental lines were detected in the frequency regions of N–H stretching (amide I), C=O stretching vibrations (amide II), and PO2? ionized asymmetric and symmetric stretching. Principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA) were used to discriminate cybrid cell lines from the two parental species at the genomic DNA level. PLS-DA analysis provided more clear discrimination between the two parental lines and their progeny cybrid lines in the score plot. PCA loading values also showed that obvious spectral differences played a significant role in discrimination between the two parental lines and their cybrid lines. These spectral differences might be directly related to subtle changes in the base functional groups and backbone structures of genomic DNA. Considering these results, this technique could provide a research foundation for the FT-IR spectral-based diagnosis, selection, and discrimination of parental lines and their cybrids. Furthermore, this technique could be applied in the hybrid seed industry for rapid screening with high heterogeneity. 相似文献
4.
Jelka Pleadin Manuela Zadravec Nina Per?i Ana Vuli? Vesna Jaki Mario Mitak 《Mycotoxin Research》2012,28(3):157-162
The aim of this study was to investigate the contamination of pig feed with moulds and the occurrence of mycotoxins. A total of 30 feed samples were collected at different animal feed factories in the north-western part of Croatia. Mycological analysis showed that the total number of moulds ranged from 1?×?103 to 1?×?105?cfu/g with samples contaminated with Aspergillus spp. (63?%), Penicillium spp. (80?%), and Fusarium spp. (77?%). A determination of aflatoxin B1 (AFB1), ochratoxin A (OTA), zearalenone (ZEA), deoxynivalenol (DON), T-2 toxin (T-2) and fumonisin (FUM) concentration was done using the validated ELISA method. The mean concentrations of AFB1 (0.5?±?0.6???g/kg), OTA (1.53?±?0.42???g/kg) and FUM (405?±?298???g/kg) were below the maximum levels or recommended values in the EU in all the investigated samples. The observed results indicated an increased contamination of pig feed with Fusarium mycotoxins DON and ZEA with mean concentrations of 817?±?447 and 184?±?214???g/kg, higher than recommended in 40 and 17?% of the analysed samples, respectively. 相似文献
5.
Peter D. Nichols J. Michael Henson James B. Guckert David E. Nivens David C. White 《Journal of microbiological methods》1985,4(2):79-94
Fourier transform-infrared (FT-IR) spectroscopy has been used to rapidly and nondestructively analyze bacteria, bacteria-polymer mixtures, digester samples and microbial biofilms. Diffuse reflectance FT-IR (DRIFT) analysis for freeze-dried, powdered samples offered a means of obtaining structural information. The bacteria examined were divided into two groups. The first group was characterized by a dominant amide I band and the second group of organisms displayed an additional strong carbonyl stretch at ~ 1740 cm?1. The differences illustrated by the subtraction spectra obtained for microbes of the two groups suggests that FT-IR spectroscopy can be utilized to recognize differences in microbial community structure. Calculation of specific band ratios has enabled to composition of bacteria and extracellular or intracellular storage product polymer mixtures to be determined for bacteria-gum (amide I/carbohydrate C-O-~ 1150 cm?1) and bacteria-poly-β-hydroxybutyrate (amide I/carbonyl ~ 1740 cm?1). The key band ratios correlate with the compositions of the material and provide useful information for the application of FT-IR sepectroscopy to environmental biofilm samples and for distinguishing bacteria grown under differing nutrient conditions. DRIFT spectra have been obtained for biofilms produced by Vibrio natriegens on stainless steel disks. Between 48 and 144 h, an increase in bands at ~ 1740 cm?1 was seen in FT-IR spectra of V. natriegens biofilm. DRIFT spectra of mixed culture effluents of anaerobic digesters show differences induced by shifts in input feedstocks. The use of flow-through attenuated total reflectance has permitted in situ real-time changes in biofilm formation to be monitored and provides a powerful tool for understanding the interactioni within adherent microbial consortia. 相似文献
6.
This study assessed the potential impact of various Fusarium strains on the population development of sugarbeet cyst nematodes. Fungi were isolated from cysts or eggs of Heterodera schachtii Schmidt that were obtained from a field suppressive to that nematode. Twenty-six strains of Fusarium spp. were subjected to a phylogenic analysis of their rRNA-ITS nucleotide sequences. Seven genetically distinct Fusarium strains were evaluated for their ability to influence population development of H. schachtii and crop performance in greenhouse trials. Swiss chard (Beta vulgaris) seedlings were transplanted into fumigated field soil amended with a single fungal strain at 1,000 propagules/g soil. One week later, the soil was infested with 250 H. schachtii J2/100 cm3 soil. Parasitized eggs were present in all seven Fusarium treatments at 1,180 degree-days after fungal infestation. The percentage of parasitism ranged from 17 to 34%. Although the most efficacious F. oxysporum strain 471 produced as many parasitized eggs as occurred in the original suppressive soil, none of the Fusarium strains reduced the population density of H. schachtii compared to the conducive check. This supports prior results that Fusarium spp. were not the primary cause of the population suppression of sugarbeet cyst nematodes at this location. 相似文献
7.
Helena Oliveira António S. Barros Ivonne Delgadillo Manuel A. Coimbra Conceição Santos 《Environmental and Experimental Botany》2009,65(1):1-10
The impacts of salt stress and inoculation in in vitro grapevine (Vitis vinifera L.) growth, nutrient accumulation, osmoregulation, photosynthesis and membrane integrity were evaluated. One month exposure to 100 mM NaCl as well as to inoculation with Phaeomoniella chlamydospora reduced relative growth rate (RGR) and induced senescence in grapevine plants, shown by: (1) decrease of Ψπ without osmoregulation, (2) decrease of chlorophyll content and fluorescence, (3) loss of membrane integrity and (4) nutritional disorders. To assess putative changes in structural and/or non-structural carbohydrates induced by these two stress conditions, alcohol insoluble residues from the roots, stems and leaves were also characterised by FT-IR and GC with respect to the sugar composition. The referred organs were distinguished based on: (1) higher proportion of uronic acid residues in leaves which diagnose the presence of pectic polysaccharides (wavenumbers 1100, 1150 and 1018 cm?1 in FT-IR spectra), (2) higher proportion of xylose and glucose on stems and FT-IR spectra diagnostic of xylose-rich polysaccharides (1041 cm?1) and cellulose (1060 cm?1), (3) higher proportion of glucose residues, xylose and arabinose on roots and a FT-IR spectra characteristic of xylose-rich polysaccharides (1041 cm?1). The main alterations induced by salt stress and inoculation were more visible in leaves, where the content of uronic acid decreased showing that changes in cell wall composition occurred, mostly at the pectic fraction. Besides, an accumulation of insoluble glucose was found, and FT-IR spectra showed that this glucose-based material was starch (maximum absorption at 998 cm?1), accumulated as a non-specific response to salt stress and P. chlamydospora inoculation. 相似文献
8.
In 1997–99 the occurrence ofFusarium spp. on winter wheat and the contamination with mycotoxins was investigated at three locations in the Rhineland, Germany. All cultivation methods investigated had an effect on the level ofFusarium infection, however, rainfall during flowering was the most important factor. The choice of cultivar and soil cultivation proved to be the most promising tools to reduce head scab severity and mycotoxin contamination. 相似文献
9.
Paris Polyphylla var. yunnanensis (PPY) has been used in traditional medicine for the treatment of parotitis and abscess. Previous studies showed the quality of PPY was associated with cultivation years. In this study, we applied ultra-high performance liquid chromatography–tandem mass spectrometry (UHPLC–MS/MS) and Fourier transform infrared (FT-IR) spectroscopy to measure the variation of saponins due to cultivation years in cultivated PPY. A rapid UHPLC–MS/MS method was developed for simultaneous determination of six major steroidal saponins (polyphyllin I, II, V, VI, VII and gracillin). Principal component analysis (PCA) was selected for pattern recognition of FT-IR profiles. The concentration of six targeted steroid saponins varied with the increase of cultivation year and attained the maximum level at 8th year (22.65?±?1.65 mg g?1). A dynamic change with the growth of PPY presented in the content of diosgenin-type saponins and pennogenin-type saponins. After the treatment of standard normal variate (SNV), the PCA result showed that 4th and 5th years’ samples were solely classified into two parts and the chemical information of other samples was quite similar. According to FT-IR and UPLC-MS/MS results, an optimal harvest time recommend at 7th or 8th year in the current stage. These results could support the previous view that the variations of metabolites were associated with cultivation years and provided chemical evidence for further research on the agricultural practice of PPY. 相似文献
10.
The conformational change of the ribose ring in NH4GpG and cis-[Pt(NH3)2(GpG)]+ was confirmed by FT-IR spectroscopic evidence as being C2′-endo, C3′-endo, anti, gg sugar ring pucker in the solid state. These results were compared with 1H NMR spectral data in aqueous solution. The FT-IR spectrum of NH4GpG shows marker bands at 802 cm?1 and 797 cm?1 which are assigned to the C3′-endo, anti, gg sugar-phosphate vibrations of ribose (?pG) and ribose (Gp?), respectively. The FT-IR spectrum of cis-[Pt(NH3)2(GpG)]+ (with N7N7 chelation in the GpG sequence) shows a marker band at 800 cm?1 which is assigned to the C3′-endo, and a new shoulder band at 820 cm?1 related to a C2′-endo ring pucker. The ribose conformation of (?pG) moiety in NH4-GpG, C3′-endo, anti, gg changes into C2′-endo, anti, gg when a platinum atom is chelated to N7N7 in the GpG sequence. 相似文献
11.
傅立叶变换红外光谱技术对5种沙门氏菌的快速分类鉴定 总被引:1,自引:0,他引:1
[目的]建立沙门氏菌属内鼠伤寒沙门氏菌、肠炎沙门氏菌、猪霍乱沙门氏菌、亚利桑那沙门氏菌、波斯坦沙门氏菌5种菌的傅立叶变换红外(Fourier transform infrared,FT-IR)光谱数据库及FT-IR分类鉴定方法.[方法]应用FT-IR技术对5种沙门氏菌进行指纹图谱数据采集,应用化学计量学分析方法对光谱进行分析.[结果]建立了5种沙门氏菌的标准FT-IR光谱数据库,用于FT-IR技术对5种可疑目标沙门氏菌进行鉴定;建立了基于主成分分析(Principal component analysis,PCA)和分级聚类分析(Hierarchical cluster analysis,HCA)两种聚类分析模型,均可成功将5种沙门氏菌进行区分.[结论]傅立叶变换红外光谱分析方法简便、快速、易操作,结果重现性好,是一种区分5种沙门氏菌的有效方法. 相似文献
12.
Rupesh K. Mishra Brajesh K. Pandey M. Muthukumar Neelam Pathak Mohammad Zeeshan 《Saudi Journal of Biological Sciences》2013,20(1):51-56
Traditional culturing methods take a long time for identification of pathogenic isolates. A protocol has been developed for the detection of Fusarium from soil samples in the early stage of infection. Seventeen soil samples from different locations were collected before the onset of rains to find out the presence of Fusarium spp. population present in the soil of guava orchards and to correlate its presence with incidence of wilt. A PCR based method was developed for the molecular characterization of Fusarium using Fusarium spp. specific primer. DNA extracted by this method was free from protein and other contaminations and the yield was sufficient for PCR amplification. The primer developed in this study was amplifying ∼230 bp in all infected samples while not in healthy soil. The specificity and sensitivity of primer were tested on several Fusarium spp. and found that this primer was amplifying 10−6 dilution of the fungal DNA. The present study facilitates the rapid detection of Fusarium spp. from infected soil samples of guava collected from different agroclimatic regions in India. A rapid detection method for pathogens and a diagnostic assay for disease would facilitate an early detection of pathogen and lead to more effective control strategies. 相似文献
13.
Seung Yeub Song Eun Yee Jie Myung Suk Ahn In Ho Lee Ill-Sup Nou Byung Whan Min Suk Weon Kim 《Molecular breeding : new strategies in plant improvement》2014,33(2):453-464
Fourier transform infrared spectroscopy (FT-IR) spectroscopy in combination with multivariate analysis was used to discriminate two different F1 hybrid lines from their parental inbred lines. Genomic DNA was isolated from leaves of three parental lines and two F1 hybrid lines of Brassica campestris subsp. pekinensis. Purified genomic DNA was analyzed by FT-IR spectroscopy in the spectral region from 4,000 to 400 cm?1. FT-IR spectra confirmed typical spectral differences between the frequency regions of N–H stretching (amide I) and C=O stretching vibrations (amide II) as well as PO2 ? ionized asymmetric and symmetric stretching. Principal component analysis was able to discriminate between F1 hybrid progenies depending on their parental lineages, even though they share the same maternal background. Partial least squares discriminant analysis gave a more clear discrimination between the two parental lines and their hybrid progenies. These FT-IR spectral differences might be directly related to subtle changes in the base functional group and backbone structures of genomic DNA. Considering these results, this technique could provide a solid research foundation for FT-IR spectral-based rapid diagnosis, selection, and discrimination of parental lines from their progenies. Furthermore, this technique could be applied to test purity in the hybrid seed industry. 相似文献
14.
《Saudi Journal of Biological Sciences》2020,27(8):2097-2105
Sugar profile and hydroxymethylfurfural (HMF) of Saudi honey were examined through high-performance liquid chromatography (HPLC) system equipped with refractive index and diode array detectors. The work was designed to assess the quality of various types of blossom honey i.e. Sider (Ziziphus spina-christi), Dhuhyana (Acacia asak), Sumra (Acacia tortilis), Qatada (Acacia hamulosa), Dhurum (Lavandula dentata), multiflora with majra (Hypoestes forskaolii), multiflora with herbs, Keena (Eucalyptus spp.) produced in the southwestern areas of the kingdom. Hierarchical cluster analysis (HCA), principal cluster analysis (PCA), and similarity and difference indices (SDI) were also applied to examine the possible grouping based on the studied quality parameters. Four main sugars (two monosaccharides i.e. fructose and glucose, two disaccharides i.e. sucrose and maltose) and HMF were investigated . The average values of fructose and glucose were in the range 33.10%–44.77% and 26.68%–37.91%, respectively. The maltose was present in all types of honey and its mean values were in the range of 0.37%–2.97%, while sucrose was absent in six types of honey, 0.25% in one unifloral honey, and 3.25% in one multi-floral honey. HMF was not detected in seven types of honey but was below the limit of quantification (0.13 mg/kg) in one type of honey. PCA displayed the accumulative variance of 79.96% for the initial two PCs suggesting that honey samples were not well distinguished by their sugar profile. Based on the sucrose and HMF contents, it was concluded that all types of blossom honey from the Asir province were of the best quality in the kingdom and met the international quality parameters. 相似文献
15.
Evaluation of Methyl Bromide Alternatives Efficacy against Soil-Borne Pathogens,Nematodes and Soil Microbial Community 总被引:1,自引:0,他引:1
Hongwei Xie Dongdong Yan Liangang Mao Qiuxia Wang Yuan Li Canbin Ouyang Meixia Guo Aocheng Cao 《PloS one》2015,10(2)
Methyl bromide (MB) and other alternatives were evaluated for suppression of Fusarium spp., Phytophthora spp., and Meloidogyne spp. and their influence on soil microbial communities. Both Fusarium spp. and Phytophthora spp. were significantly reduced by the MB (30.74 mg kg-1), methyl iodide (MI: 45.58 mg kg-1), metham sodium (MS: 53.92 mg kg-1) treatments. MS exhibited comparable effectiveness to MB in controlling Meloidogyne spp. and total nematodes, followed by MI at the tested rate. By contrast, sulfuryl fluoride (SF: 33.04 mg kg-1) and chloroform (CF: 23.68 mg kg-1) showed low efficacy in controlling Fusarium spp., Phytophthora spp., and Meloidogyne spp. MB, MI and MS significantly lowered the abundance of different microbial populations and microbial biomass in soil, whereas SF and CF had limited influence on them compared with the control. Diversity indices in Biolog studies decreased in response to fumigation, but no significant difference was found among treatments in PLFA studies. Principal component and cluster analyses of Biolog and PLFA data sets revealed that MB and MI treatments greatly influenced the soil microbial community functional and structural diversity compared with SF treatment. These results suggest that fumigants with high effectiveness in suppressing soil-borne disease could significantly influence soil microbial community. 相似文献
16.
Soil microbial communities are crucial to the functioning of agricultural systems but little information is available on the effects of allelochemicals on soil microorganisms in vivo. Cucumber seedlings grown in soil were treated with different concentrations of vanillin (0.02–0.2?μmol/g soil), a phenolic compound with autotoxic activity. The community structures and abundances of Fusarium and Trichoderma spp. in cucumber rhizosphere were analyzed by polymerase chain reaction (PCR)-denaturing gradient gel electrophoresis and quantitative PCR, respectively. Results showed that vanillin changed the community structures of Fusarium and Trichoderma spp. Vanillin decreased the number of bands of Fusarium spp., but increased the number of bands, Shannon–Wiener and evenness indices of Trichoderma spp. (p?.05). Vanillin at all concentrations promoted the abundances of Fusarium and Trichoderma spp. (p?.05), and this stimulating effects increased with increasing concentration of vanillin. Overall, this study provided primary evidence that vanillin changed the community structures and abundances of Fusarium and Trichoderma spp., and that these two microbial groups showed different responses to vanillin. 相似文献
17.
Forty-one isolates ofFusarium obtained from the main Argentinian corn production area were tested for their ability to produce moniliformin. One of 22 isolates ofF. moniliforme, 2/10 of F.proliferatum and 3/9 ofF. subglutinans, produced moniliformin in a range between 0,3 to 2,7 mg/g. These data represent the first report of the production of moniliformin byFusarium species from section Liseola in Argentina. 相似文献
18.
The influence of several long-term conventional and conservation tillage treatments on the incidence and the diversity ofFusarium spp. in soil was studied. Soil samples were randomly collected from naturally contaminated field trials and Fusarium species
were isolated by using the dilution plate method. The identification of the species was done by direct microscopic observation
onFusarium-specific media. The isolation frequency ofFusarium species and the total number of colony forming units was affected by the sampling year and the cultivated crop and showed
significant differences between the tillage treatments. Moldboard plough-treatments resulted in a lower diversity of Fusarium
species than the chisel plough and rotary tiller treatments. Besides the tillage system the tillage depth also appeared to
affect theFusarium populations. The deeper the tillage the lower was the number of isolatedFusarium spp. TwentyFusarium species were identified over both years of investigation. In conservation tillage plots a higher diversity ofFusarium species was found than in the moldboard plough-based tillage plots. A correlation betweenFusarium species producing the mycotoxin deoxynivalenol (DON) isolated from soil and the DON-content of grain could not be observed.
However, these investigations indicate that conservation soil tillage results in conditions which increase the incidence ofFusarium species in soil. 相似文献
19.
ABSTRACTFT-IR and FT-Raman spectra of 2,2′-bipyridine-3,3′-dicarboxylic acid (B3DA), 2,2′-bipyridine-4,4′-dicarboxylic acid (B4DA) and 2,2′-bipyridine-5,5′-dicarboxylic acid (B5DA) were recorded and analysed. The quantum chemical calculations of the title compounds begin with barrier potentials at different rotation angles around the C–C′ and C–Cα bonds in order to arrive conformation of lowest energy using DFT employing B3LYP functional with 6-311++G(d,p) basis set. This confirmation was further optimised to get the global minimum geometry. The vibrational frequencies along with IR, Raman intensities were computed, the rms error between observed and calculated frequencies were 11.2 cm?1, 10.2 cm?1 and 12.2 cm?1 for B3DA, B4DA, and B5DA. An 87-element modified valence force field is derived by solving the inverse vibrational problem using Wilson’s GF matrix method. This force field is refined using 163 observed fundamentals employing in overlay least-squares technique. The average error between computed and experimental frequencies was found as 12.85 cm?1 using potential energy distribution (PED) and eigenvectors. By using the gauge-independent atomic orbital (GIAO) method calculate the 1H and 13C NMR chemical shifts of the molecules and compared with experimental results. The first-order hyperpolarisability, HOMO and LUMO energies, molecular electrostatic potential (MESP) and natural orbital analysis (NBO) of titled compounds were evaluated using DFT. 相似文献
20.
Organic acids and inorganic chemistry were examined in seventeen seepage lakes, seven streams, and one seep in central Maine. The objectives of this analysis were to determine the quantity and quality of dissolved organic carbon (DOC), and to assess the relationship between organic and inorganic surface water chemistry. Lakes and streams sampled were dilute (average conductivity of 20.3 μS cm?1) with a wide range of DOC (125–2593 μmol C L?1). Organic acids in DOC were evaluated by: DOC fractionation (hydrophobic acids and neutrals, and hydrophilic acids, bases, and neutrals); DOC isolation followed by FT-IR, base titration, and chemical analyses; adsorption on solid phase extraction columns; and charge balance studies. All lakes and streams were dominated by hydrophobic and hydrophilic acids (60 to 92% of DOC). Lakes and streams with low DOC had low hydrophobic to hydrophilic acid ratios (ca 1.2–1.3), regardless of pH and acid neutralizing capacities (ANC), compared to lakes and streams with moderate to high DOC concentrations (ca 1.9–2.4). Based on FT-IR spectroscopy and chemical analysis, organic acids were found to be dominated by a strong carboxylic character. Titration data of isolated DOC allowed accurate prediction of organic anions, which were strongly pH dependent (organic anions ranged from 14 to 198 μeq L?1). Exchange acidity averaged 11.3, 13.6, and 8.7 μeq mg C?1 for lake hydrophobic acids, lake hydrophilic acids, and stream hydrophobic acids, respectively. Overall evidence suggested that DOC and organic acid characteristics were related to their carboxylic functional group content and that the nature of these constituents was similar despite the source of origin (upland soils, wetlands, or Sphagnum deposits). Also, contact of soil leachates with B horizons seemed to be a controlling factor in DOC quantity and quality in the lakes and streams studied. 相似文献