一株能高效降解几种有机磷农药的菌株JS018的鉴定

从福建三明农药厂附近的土壤分离、筛选获得一株能够高效降解甲基1605、辛硫磷等有机磷农药的菌株JS018,在LB培养基中发酵36h,对甲基1605、辛硫磷、三唑磷、敌敌畏的降解率分别为96%、99%、98.9%和69.0%。该菌在LB平板培养基上形成的菌落为粉红色,圆形,有光泽;经电镜观察,为小球状菌,直径0.5μm~0.75μm;革兰氏染色为阴性;能够在30℃~38℃温度范围内和pH7.0~9.0范围内很好的生长,最适生长温度为32℃,最适pH7.5~8.0;在含有6%NaCl以上的培养基中,不能生长。抗生素敏感性实验表明:JS018菌对安比西林、青霉素、林肯霉素有抗性;对卡那霉素、四环素、庆大霉素等敏感。碳源发酵实验表明:该菌株能发酵葡萄糖、海藻糖、松三糖、乙醇;不能发酵阿拉伯糖、蔗糖、甘露糖、木糖、果糖、半乳糖、麦芽糖、乳糖等;不能利用棕檬酸盐,不能液化明胶,不产生硫化氢,能还原硝酸盐,不产生吲哚,接触酶阳性,脲酶阳性。根据其形态特征,生理生化特性1、6S rDNA序列分析,初步鉴定JS018为Roseomonas(玟瑰单胞菌属)。     

烟碱降解细菌的分离、鉴定及其降解性能的初步研究

从福建三明地区的土壤中分离得到一株能够高效降解烟碱的菌株 ,编号为DN2。该菌经常规的形态、生理生化分析以及 16SrDNA序列同源性分析 ,鉴定为Ochrobactrumintermedium ,属于α_变形杆细菌纲。该菌在 30℃～4 0℃和pH 6 . 0～ 9. 0范围内具有较高的降解活性 ,其最适值分别为 30℃和 6 5 ,烟碱的耐受浓度在无机盐培养基中可达到 4 0 0 0mg L。该菌能够以烟碱为唯一碳源生长 ,对于 5 0 0mg L烟碱的降解速率为 15mg L·h ,36h烟碱降解率为97. 6 5 %。该菌在烟草工业和环境保护上可能具有应用前景。     

一株海藻多糖降解菌的分离与鉴定

【目的】从腐烂的褐藻中筛选一株海藻多糖降解菌,编号L206,分析其对不同多糖的降解能力。【方法】通过形态观察、生化单因子试验及16S r RNA基因鉴定细菌,DNS法测定海藻多糖降解酶活性等。【结果】海洋细菌L206,革兰氏阴性短杆菌,生长对数期为3-21 h,适宜生长的Na Cl质量浓度为0-3%(质量体积比);通过16S r RNA基因鉴定为白色噬琼胶菌(Agarivorans albus);L206被海带粉诱导至72 h时,综合复合酶活力达到最大,其中淀粉酶活力最高(28.17 U/m L),木聚糖酶次之(23.83 U/m L)。【结论】白色噬琼胶菌L206是一株多能型多糖降解菌,对褐藻多糖有特殊的降解能力,具有潜在开发价值。     

Glucose and plant exudate enhanced enumeration of bacteria capable of degrading polycyclic aromatic hydrocarbons

Enumerating environmental microbial isolates capable of polycyclic aromatic hydrocarbon (PAH) degradation can provide insight into the microbe-plant interactions that facilitate PAH removal. We examined a known PAH degrader ( Pseudomonas putida G7), a nondegrader ( Agrobacterium tumefaciens LBA4404), and several microorganisms isolated from the environment by using a PAH cocktail in an enumeration medium?with or without 0.025% (m/v) glucose and (or) root exudates. Compared with the standard most probable number (MPN), the addition of glucose and root exudates in a modified MPN method resulted in a 3- to 11-fold enhancement of PAH degraders being enumerated among microorganisms found in PAH-contaminated soils. High-performance liquid chromatography analysis verified that PAH levels were reduced using this modified enumeration method. Low levels of glucose, perhaps in concert with other materials in exudates, may promote microbial metabolism, thereby enhancing PAH degradation.     

Isolation and characterization of Pseudomonas sp. strain capable of degrading diethylstilbestrol

Since diethylstilbestrol (DES) interrupts endocrine systems and generates reproductive abnormalities in both wildlife and human beings, methods to remove DES from the environments are urgently recommended. In this study, bacterial strain J51 was isolated and tested to effectively degrade DES. J51 was identified as Pseudomonas sp. based on its nucleotide sequence of 16S rRNA. The quinoprotein alcohol dehydrogenase and isocitrate lyase were identified to be involved in DES degradation by MALDI–TOF–TOF MS/MS analysis. In the presence of 40 mg/l DES, increase of the genes encoding quinoprotein alcohol dehydrogenase and isocitrate lyase in both RNA and protein levels was determined. The HPLC/MS analysis showed that DES was hydrolyzed to a major degrading metabolite DES-4-semiquinone. It was the first time to demonstrate the characteristics of DES degradation by specific bacterial strain and the higher degradation efficiency indicated the potential application of Pseudomonas sp. strain J51 in the treatment of DES-contaminated freshwater and seawater environments.     

Isolation and characterization of a Bacillus strain capable of degrading the extracellular glucan from Cellulomonas flavigena strain KU

P.A. BERTRAM, C.S. BULLER, G.C. STEWART AND J.M. AKAGI. 1993. Bacteria capable of utilizing the water-insoluble purified extracellular (1 → 3)-β-D-glucan (curdlan) from Cellulomonas flavigena strain KU by extracellular enzymes, were insolated and characterized. Enrichment cultures from a Winogradsky column were incubated anaerobically at 55C with curdlan as the sole source of carbon. Colonies surrounded by zones of clearing were selected from subcultures on solid curdlan media. One of the isolates was chosen for further study and identified by conventional methods, API-tests with calculation of similarity coefficients and ID-scores, estimation of mol% (G + C) and DNA-DNA liquid hybridization. The isolate is a facultatively anaerobic, facultatively thermophilic Bacillus sp. Identification at the species-level was not achieved. The isolate was characterized by some rare traits among bacilli, but it remains unresolved whether it defines a new taxon.     

一株高浓度多环芳烃降解菌的鉴定和降解特性

采用选择性富集培养方法,从沈抚灌区土壤中分离得到多环芳烃(PAHs)高效降解菌NI2,应用此降解菌制备固定化菌剂,修复焦化厂内高浓度PAHs污染土壤,并通过生理生化和16S rDNA测序进行微生物鉴定.经过30 d的降解实验,菌N12对污染土壤中各PAH的去除率＞66％,总去除率为80％.生理生化和16S rDNA测序分析表明,分离得到的菌株N12为分支杆菌属(Mycobacterium sp.),该菌具有与其他分枝杆菌同源的双加氧酶基因nidA和pdoA2.结果表明,从土壤中筛选获得的分枝杆菌可以修复高浓度PAHs污染工业土壤.     

一株溴氰菊酯降解菌的分离鉴定及其降解条件优化

【背景】拟除虫菊酯类农药的降解已成为食品安全和环境卫生领域的研究热点,而生物降解被认为是一种绿色高效的解决方法。【目的】从长期受拟除虫菊酯类农药污染的草莓根系土壤分离一株溴氰菊酯(deltamethrin,DM)降解菌,并优化其培养基及降解条件,从而提高DM降解菌的降解效率。【方法】采用富集驯化、分离纯化法筛选DM降解菌,通过形态学和生理生化特征,以及16S rRNA基因序列分析进行鉴定。通过Plackett-Burman因素筛选试验、最陡爬坡试验和Box-Behnken试验优化菌株降解条件。【结果】筛选获得一株DM降解菌LH-1-1,96h对DM(100mg/L)的降解率为53.43%,经鉴定为琼氏不动杆菌(Acinetobacter junii);通过优化后,在DM浓度75mg/L、胰蛋白胨3 g/L、pH值6.8、硫酸铵1.5 g/L、氯化铁0.01 g/L、接种量为5%(体积比)、菌龄12 h、培养温度30℃条件下,菌株LH-1-1对DM降解率达82.36%,较未优化前提高了28.93%。【结论】A. junii LH-1-1具有较高的DM降解能力,该菌可为生物修复受DM或拟除...     

Glutathione S-transferase-encoding gene as a potential probe for environmental bacterial isolates capable of degrading polycyclic aromatic hydrocarbons.

Homologs of the glutathione S-transferase (GST)-encoding gene were identified in a collection of aromatic hydrocarbon-degrading Sphingomonas spp. isolated from New Zealand, Antarctica, and the United States by using PCR primers designed from the GST-encoding gene of Sphingomonas paucimobilis EPA505. Sequence analysis of PCR fragments generated from these isolates and of the GST gene amplified from DNA extracted from polycyclic aromatic hydrocarbon (PAH)-contaminated soil revealed a high degree of conservation, which may make the GST-encoding gene a potentially useful marker for PAH-degrading bacteria.     

芘高效降解菌的分离鉴定及其降解特性

以芘为唯一碳源,采用富集培养方法,从沈抚灌区石油污染土壤中分离得到一株芘降解菌ZQ5.根据形态学观察、生理生化鉴定和16S rDNA序列分析结果,将菌株ZQ₅鉴定为寡养单胞菌属（Stenotrophomonas sp.）.采用摇瓶振荡培养方法研究该菌株降解芘的特性及培养条件对降解效能的影响.结果表明：菌株ZQ₅在30 ℃振荡培养10 d后,对100 mg·L^-1的芘降解率为91.2%,加入水杨酸（100 mg·L^-1）作为共代谢底物可以提高菌株ZQ₅对芘的降解率.当培养基pH为7～8、盐浓度不高于2%时,有利于菌株ZQ₅降解效能的发挥.     

一株芘降解菌的分离鉴定及其降解效果

以芘为唯一碳源,采用平板升华法,从徐州市卧牛山焦化厂周围污染土壤中分离得到一株芘降解菌SE12.经形态观察、生理生化试验和16S rDNA鉴定,该菌株属于分枝杆菌属(Mycobacterium sp.)菌株,与快速生长型非致病性南非分枝杆菌(M.austroa fricanum ATCC33464)的同源性达到98%.SE12降解芘的最适pH和温度为pH9和30℃.当土壤芘初始含量为100和200mg.kg-1,SE12接种量为107CFU.g-1时,30℃培养28d后土壤芘降解率分别达到97%和99%.利用双加氧酶基因的同源序列引物nidAF/nidAR和nidBF/nidBR进行扩增,得出了该菌株编码双加氧酶大亚基和小亚基的基因片段,它们与已知降解芘的分枝杆菌的双加氧酶基因具有高度同源性.     

Isolation and characterization of four novel Gram-positive bacteria associated with the rhizosphere of two endemorelict plants capable of degrading a broad range of aromatic substrates

Four new Gram-positive, phenol-degrading strains were isolated from the rhizospheres of endemorelict plants Ramonda serbica and Ramonda nathaliae known to exude high amounts of phenolics in the soil. Isolates were designated Bacillus sp. PS1, Bacillus sp. PS11, Streptomyces sp. PS12, and Streptomyces sp. PN1 based on 16S rDNA sequence and biochemical analysis. In addition to their ability to tolerate and utilize high amounts of phenol of either up to 800 or up to 1,400 mg l⁻¹ without apparent inhibition in growth, all four strains were also able to degrade a broad range of aromatic substrates including benzene, toluene, ethylbenzene, xylenes, styrene, halogenated benzenes, and naphthalene. Isolates were able to grow in pure culture and in defined mixed culture on phenol and on the mixture of BTEX (benzene, toluene, ethylbenzene, and xylenes) compounds as a sole source of carbon and energy. Pure culture of Bacillus sp. PS11 yielded 1.5-fold higher biomass amounts in comparison to mixed culture, under all conditions. Strains successfully degraded phenol in the soil model system (2 g kg⁻¹) within 6 days. Activities of phenol hydroxylase, catechol 1,2-dioxygenase, and catechol 2,3-dioxygenase were detected and analyzed from the crude cell extract of the isolates. While all four strains use ortho degradation pathway, enzyme indicative of meta degradation pathway (catechol 2,3-dioxygenase) was also detected in Bacillus sp. PS11 and Streptomyces sp. PN1. Phenol degradation activities were induced 2 h after supplementation by phenol, but not by catechol. Catechol slightly inhibited activity of catechol 2,3-dioxygenase in strains PS11 and PN1.     

Isolation and characterization of novel bacteria degrading polycyclic aromatic hydrocarbons from polluted Greek soils

Three bacterial strains, designated as Wphe1, Sphe1, and Ophe1, were isolated from Greek soils contaminated with polycyclic aromatic hydrocarbon (PAH)-containing waste from the wood processing, steel, and oil refinery industries. Wphe1, Sphe1, and Ophe1 were characterized and identified as species of Pseudomonas, Microbacterium, and Paracoccus, respectively, based on Gram staining, biochemical tests, phospholipid analysis, FAME analysis, G+C content and 16S rRNA gene sequence analysis. The results of gas chromatography showed that strain Wphe1 degraded naphthalene, phenanthrene, and m-cresol over a wide temperature range; strain Sphe1 was a degrader of phenanthrene and n-alkanes; most interestingly, strain Ophe1 degraded anthracene, phenanthrene, fluorene, fluoranthene, chrysene, and pyrene, as well as cresol compounds and n-alkanes as sole carbon source. This is the first report of a representative of the genus Paracoccus capable of degrading PAHs with such versatility. These three strains may be useful for bioremediation applications.     

降解芳烃微生物的多样性

芳烃是一类生物异源物质,自然微生物群落利用其对环境的适应性,对这类物质由陌生到适应,微生物群落的遗传背景发生了变化,降解芳烃的微生物呈现出多样性,本文系统介绍了降解芳烃微生物的特性,物种资源,环境适应,遗传背景及演变;介绍了各遗传型物种的功能基因数量,表达及调控方式,指明芳烃环境污染的生物修复主要取决于高效工程构造及代谢过程的控制。     

Characterization of four olive-mill-wastewater indigenous bacterial strains capable of aerobically degrading hydroxylated and methoxylated monocyclic aromatic compounds

Seven aerobic bacterial strains capable of degrading several of the monocyclic aromatic compounds occurring in the phenolic fraction of olive-mill wastewaters (OMWs) were isolated from an Italian OMW. The results of the 16S rDNA restriction analysis evidenced that these strains are distributed among four different groups. One strain of each group was taxonomically characterized by sequencing the amplified 16S rDNA, and the four strains were assigned to the genera Comamonas (strain AV1A), Ralstonia (strain AV5BG), Pseudomonas (strain AV2A) and Sphingomonas (strain AV6C). The four strains, when checked for the ability to degrade nine monocyclic aromatic compounds abundant in OMWs, were found to significantly metabolize five to eight of them, both as resting cells and growing cells. Specific enzyme analyses of the same selected strains showed: (1) the occurrence of O-demethylating activities towards four methoxylated mono-aromatic acids in three of the four studied strains (strains AV1A, AV5BG and AV6C), (2) ring-cleavage activity towards protocatechuic acid in all of the strains, and (3) a ring-cleavage activity towards catechol in strain AV6C. The isolates described here exhibit a biodegradation potential towards monocyclic aromatic compounds of OMWs that is markedly broader and higher than that displayed by other aerobic bacteria described previously. These features make them excellent candidates for removing the low-molecular-weight phenolic compounds persisting in the effluent following anaerobic digestion of OMWs.     

一株纤维素降解真菌的筛选及鉴定

[目的]分离筛选高效降解纤维素的真菌菌株,并研究其产酶能力.[方法]利用刚果红染色法从甘蔗地土壤中分离纤维素降解真菌,再通过测定滤纸的降解率及发酵酶活复筛.[结果]综合考虑水解圈,水解圈和菌株直径的比值(HC值),滤纸的降解率和复筛酶活,对试验真菌降解纤维素的能力进行综合评价,筛选到具有较强纤维素降解能力的真菌菌株SJ1,经形态学观察及分子生物学鉴定,该菌属于草酸青霉.其滤纸酶活、内切葡聚糖酶酶活(CMC酶活)、β-葡聚糖苷酶酶活和外切葡聚糖酶酶活(CBH酶活)分别为25.15、740.42、58.03和2.442 U/mL.[结论]菌株SJ1是一株十分具有研究开发潜力的纤维素酶生产菌株.     

一株高效降解芘的细菌分离、鉴定及其降解效果

摘要：【目的】获得高效降解高分子量多环芳烃的细菌,并研究其对多环芳烃的降解能力。【方法】利用富集培养和芘升华平板方法,从焦化厂污染土壤中分离多环芳烃降解细菌,对分离菌株通过形态特征、16S rRNA基因和gyrb基因序列相似性分析进行鉴定,并研究该菌对高分子量多环芳烃（HMW-PAHs）的降解效果。【结果】筛选到一株能以芘、苯并蒽、屈、苯并芘、茚并芘、苯并苝、荧恩为碳源和能源生长并降解这些底物的菌株HBS1,该菌株的16S rRNA基因和gyrb基因序列与Gordonia amicalis的相应基因的相似     

Isolation of a microorganism capable of degrading poly-(L-lactide)

The isolation of poly-(L-lactide) (PLA)-degrading microorganisms was investigated. A PLA-degrading actinomycete, strain No. 3118, was isolated and tentatively identified as a member of the genus Amycolatopsis. The optimum conditions for degradation of PLA were 43 degrees C at about pH 7 in a mineral salt medium with a low concentration of organic nutrients (0.002% yeast extract). The original shape of PLA film (Mw=2.3x10(5) after sterilization, 20 &mgr;m thick) disappeared within 2 weeks. Lactic acid was detected after the film was incubated with culture supernatant.     

一株东祁连山耐低温纤维素降解菌株的分离、鉴定及产酶特性

从东祁连山高寒草甸土壤中分离得到一株纤维素酶高产菌株【3-2。根据菌体形态观察、革兰氏染色反应及16S rDNA序列测定以及序列同源性比较,确定鉴定该菌为芽孢杆菌属的成员(Bacillus sp.)。对该菌的产纤维素酶条件研究结果表明:该菌在5℃~45℃、初始pH 4.0~9.0的环境下均能产纤维素酶。在初始pH为8.0、盐浓度为2.0%~3.0%之间、培养温度为20℃培养条件下最适产酶。在5℃时,相对酶活仍能保持60%。     

一株甲醛降解菌的筛选及降解特性的研究

【目的】以甲醛为唯一碳源与能源,以期从印染厂采集的活性污泥中筛选出快速降解甲醛的菌株。【方法】采用传统微生物纯培养方法和形态学特征、生理生化试验,结合16S rRNA基因序列分析以及甲醛关键脱氢酶(FDH)对筛选的菌株W1进行系统研究,并利用正交设计法研究不同因素处理对菌株W1降解甲醛特性的影响。【结果】分类结果显示鉴定菌株W1属于恶臭假单胞菌(Pseudomonas putida),通过单因素试验和正交试验考察培养条件对菌株降解甲醛的影响,得出菌株W1降解甲醛的最适条件为:甲醛浓度为500 mg/L,温度30°C,pH 6.0,摇床转速为200 r/min,接种量为3%。【结论】在最适条件下菌株W1具有较强的降解甲醛能力,在24 h其甲醛降解率达98%。