Population dynamics of the sudden oak death pathogen Phytophthora ramorum in Oregon from 2001 to 2004

Phytophthora ramorum (Oomycetes) is an emerging plant pathogen in forests in southwestern Oregon (Curry County). Moreover, since 2003 it has been repeatedly isolated from plants in Oregon nurseries. In this study, we analysed the genetic diversity of the P. ramorum population in Oregon from 2001 to 2004 by using microsatellites. A total of 323 isolates (272 from the infested forest; 51 from nurseries) were screened at 10 loci. The overall P. ramorum population in Oregon is characterized by low genetic diversity and has all the hallmarks of an introduced organism. All isolates within the A2 mating type belonged to the same clonal lineage and no recombinant genotypes were found. The forest population (24 genotypes) was dominated by a single multilocus genotype which persisted over years, indicating that eradication efforts in the forest have not completely eliminated inoculum sources. In contrast, genotypic evidence suggests that eradication was effective in nurseries. In 2003 and 2004, a total of 11 genotypes were found in the nurseries (one belonged to the European lineage of P. ramorum) but no genotype was recovered in both sampling years. Significant differentiation and low gene flow were detected between nursery and forest populations. Only two nursery genotypes were also found in the forest, and then at low frequency. Thus, the nursery infestation is not caused by the genotypes observed in Curry County, but likely resulted through introduction of novel genotypes from nurseries out-of-state. This highlights the continued importance of sanitation and quarantine in nurseries to prevent further introduction and spread of P. ramorum.     

Tracking the sudden oak death pathogen

Invasive species are, by definition, unwelcome and pathogenic ones, especially so. Tracing the origins and spread of Phytophthora ramorum, the devastating 'Sudden Oak Death' pathogen, in the forests and nurseries of Oregon has revealed differences between forest and nursery pathogen populations that suggest discrete sources of primary inoculum initiate each type of outbreak. New information on the ecology and evolution of this pathogen is presented that helps gauge the effectiveness of quarantine and eradication programmes.     

Strawberry Tree Blight in Spain, a New Disease Caused by various Phytophthora Species

During surveys for Phytophthora ramorum in garden centres in Majorca, Spain, 31 isolates of Phytophthora were recovered from potted strawberry trees ( Arbutus unedo ) showing leaf and twig blights. Many isolates of Phytophthora syringae and Phytophthora citrophthora as well as single isolates of P. ramorum, Phytophthora tropicalis and Phytophthora nicotianae were identified on morphological features and on the sequences of the internal transcribed spacer regions from ribosomal DNA genes. Phytophthora syringae was collected most frequently in late autumn and winter, whereas P. citrophthora was dominant during late summer and autumn. In vitro pathogenicity of P. syringae and P. citrophthora was compared with that of P. ramorum by inoculating intact detached leaves of A. unedo with zoospores and twigs with mycelial plugs. In addition, in vitro sporangial production was examined on inoculated excised leaves and on agar plugs at 12, 15 and 20°C. Phytophthora citrophthora produced the largest lesions both on leaves and on twigs at all temperatures. Phytophthora ramorum formed lesions comparable in size to those of P. syringae , but it significantly produced more sporangia on excised leaves and agar plugs. In a log inoculation assay, P. syringae caused large lesions in the inner bark, whereas those of P. ramorum were moderate. Strawberry tree blight has not yet been observed in natural ecosystems in the western Mediterranean areas. Possible biological and environmental limitations hindering disease spread in the wild are discussed.     

The potential spread of terrestrial planarians Artioposthia triangulata and Australoplana sanguinea var. alba to continental Europe

A survey in Great Britain of the introduced terrestrial planarians Artioposthia triangulata and Australoplana sanguinea var. alba, which are obligate predators of earthworms, indicates that after 30 years Artioposthia triangulata is established throughout Scotland. However, apart from an initial record in 1965, Artioposthia triangulata was unrecorded from England until it was found again in 1992; currently there are 25 records.
There are fewer records of Australoplana sanguinea var. alba and these are mainly from the south and west of England. Ecoclimatic data from Edinburgh, where Artioposthia triangulata is common, and Plymouth, close to where Australopiana sanguinea var. alba has been recorded, were used by the computer programme CLIMEX to predict the potential spread of these planarians within Europe. Results suggest that Artioposthia triangulata could become established in north west Europe, including areas of Scandinavia, Germany and Poland, whereas Australoplana sanguinea var. alba would be confined to western Europe, including northern Spain. To slow their spread within Britain and prevent their establishment on continental Europe it is suggested that all nurseries and garden centres which sell containerised plants should initiate and maintain stringent hygiene regimes.     

A Porcine Epidemic Diarrhea Virus Outbreak in One Geographic Region of the United States: Descriptive Epidemiology and Investigation of the Possibility of Airborne Virus Spread

This study describes a spring 2013 outbreak of porcine epidemic diarrhea virus (PEDv), using data from 222 swine sites in 14 counties area in 4 contiguous states in the United States. During the outbreak, the premises-level incidence of PEDv was 40.5 percent (90/222 sites). One of the three companies from which data were collected had a lower incidence (19.5 percent) than the other two companies (41.1 and 47.2 percent). Sow sites had the highest incidence of PEDv during the outbreak (80.0 percent). Spatial analysis showed that PEDv was clustered rather than randomly distributed, which suggested that sites near a positive site had increased risk of acquiring PEDv infection. Meteorological data were used to investigate the hypothesis that PEDv was spread by air. If airborne dissemination played a role in this outbreak, we would expect the direction of disease spread to correlate with the predominant wind direction. Two methods were used to determine the direction of disease spread—linear direction mean analysis in ArcGIS and the direction test in ClusterSeer. The former method indicated PEDv spread was south to slightly southwest, and the latter indicated spread was to the southeast. The predominant wind direction during the month of the outbreak was toward the south, with some southeast and southwest winds; the strongest wind gusts were toward the southwest. These findings support the hypothesis that PEDv was spread by air. The results, however, should be interpreted cautiously because we did not have information on direct and indirect contacts between sites, such as movement of trucks, feed, pigs or people. These types of contacts should be evaluated before pathogen spread is attributed to airborne mechanisms. Although this study did not provide a definitive assessment of airborne spread of PEDv, we believe the findings justify additional research to investigate this potential mechanism of transmission.     

Landscape level analysis of mountain pine beetle in British Columbia, Canada: spatiotemporal development and spatial synchrony within the present outbreak

Eruptive herbivores can exert profound landscape level influences. For example, the ongoing mountain pine beetle outbreak in British Columbia, Canada, has resulted in mortality of mature lodgepole pine over >7 million ha. Analysis of the spatio‐temporal pattern of spread can lend insights into the processes initiating and/or sustaining such phenomena. We present a landscape level analysis of the development of the current outbreak. Aerial survey assessments of tree mortality, projected onto discrete 12×12 km cells, were used as a proxy for insect population density. We examined whether the outbreak potentially originated from an epicenter and spread, or whether multiple localized populations erupted simultaneously at spatially disjunct locations. An aspatial cluster analysis of time series from 1990 to 2003 revealed four distinct time series patterns. Each time series demonstrated a general progression of increasing mountain pine beetle populations. Plotting the geographical locations of each temporal pattern revealed that the outbreak occurred first in an area of west‐central British Columbia, and then in an area to the east. The plot further revealed many localized infestations erupted in geographically disjunct areas, especially in the southern portion of the province. Autologistic regression analyses indicated a significant, positive association between areas where the outbreak first occurred and conservation lands. For example, the delineated area of west‐central British Columbia is comprised of three conservation parks and adjacent working forest. We further examined how population synchrony declines with distance at different population levels. Examination of the spatial dependence of temporal synchrony in population fluctuations during early, incipient years (i.e. 1990–1996) suggested that outbreaking mountain pine beetle populations are largely independent at scales >200 km during non‐epidemic periods. However, during epidemic years (i.e. 1999–2003), populations were clearly synchronous across the entire province, even at distances of up to 900 km. The epicentral pattern of population development can be used to identify and prioritize adjacent landscape units for both reactive and proactive management strategies intended to minimize mountain pine beetle impacts.     

Clonal expansion of the Belgian Phytophthora ramorum populations based on new microsatellite markers

Co-existence of both mating types A1 and A2 within the EU1 lineage of Phytophthora ramorum has only been observed in Belgium, which begs the question whether sexual reproduction is occurring. A collection of 411 Belgian P. ramorum isolates was established during a 7-year survey. Our main objectives were genetic characterization of this population to test for sexual reproduction, determination of population structure, evolution and spread, and evaluation of the effectiveness and impact of control measures. Novel, polymorphic simple sequence repeat (SSR) markers were developed after screening 149 candidate loci. Eighty isolates of P. ramorum, broadly representing the Belgian population, were analyzed using four previously described and three newly identified polymorphic microsatellite loci as well as amplified fragment length polymorphisms. SSR analysis was most informative and was used to screen the entire Belgian population. Thirty multilocus genotypes were identified, but 68% of the isolates belonged to the main genotype EU1MG1. Although accumulated mutation events were detected, the overall level of genetic diversity within the Belgian isolates of P. ramorum appears to be limited, indicating a relatively recent clonal expansion. Based on our SSR analysis there is no evidence of sexual recombination in the Belgian population of P. ramorum . Metalaxyl use decreased the genetic diversity of P. ramorum until 2005, when the majority of the isolates had become resistant. Most genotypes were site-specific and despite systematic removal of symptomatic and neighbouring plants, some genotypes were detected over a period of several years at a single site, sometimes discontinuously, indicating (latent) survival of the pathogen at those sites.     

Spatial analysis of gypsy moth populations in Sardinia using geostatistical and climate models

• 1 Spatial fluctuations of the Sardinian population of the gypsy moth Lymantria dispar (L.) (Lepidoptera: Lymantriidae) were characterized using geostatistical and climate models. Data on gypsy moth egg mass abundance recorded at 282 permanent monitoring sites from 1980 to 2004 were incorporated in a geographic information system with the vegetational, geomorphological and pedological features of the sites.
• 2 Statistical analyses revealed that the relative outbreak frequency was related to the predominant host tree, slope and elevation of the monitoring sites, whereas there was no correlation between outbreak frequency and exposure and soil type.
• 3 By using bioclimatic modelling, probability maps of gypsy moth outbreaks were generated. The model identified a probability surface with climatic conditions favourable to gypsy moth outbreaks and thus potentially subject to defoliation. The maps included 92 sites where outbreaks never occurred, suggesting that the Sardinian climate may not be a determinant factor for gypsy moth outbreaks.
• 4 The geostatistical method cokriging with outbreak frequency as a covariate was found to be the most suitable technique to estimate gypsy moth egg mass abundance. Semivariograms showed spatial correlation of egg mass abundance within the range 18.5–53 km. The results obtained were used to create regional gypsy moth distribution maps by cokriging, which demonstrated the outbreak foci and different infestation levels at each monitoring area. These results can help to delimit the treatment areas and develop rational gypsy moth management programmes.

     

Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum

The genus Phytophthora includes some of the most destructive plant pathogens affecting agricultural and native ecosystems and is responsible for a number of recent emerging and re-emerging infectious diseases of plants. Sudden oak death, caused by the exotic pathogen P. ramorum , has caused extensive mortality of oaks and tanoaks in Northern California, and has brought economic losses to US and European nurseries as well due to its infection of common ornamental plants. In its known range, P. ramorum occurs as three distinct clonal lineages. We inferred the evolutionary history of P. ramorum from nuclear sequence data using coalescent-based approaches. We found that the three lineages have been diverging for at least 11% of their history, an evolutionarily significant amount of time estimated to be on the order of 165 000 to 500 000 years. There was also strong evidence for historical recombination between the lineages, indicating that the ancestors of the P. ramorum lineages were members of a sexually reproducing population. Due to this recombination, the ages of the lineages varied within and between loci, but coalescent analyses suggested that the European lineage may be older than the North American lineages. The divergence of the three clonal lineages of P. ramorum supports a scenario in which the three lineages originated from different geographic locations that were sufficiently isolated from each other to allow independent evolution prior to introduction to North America and Europe. It is thus probable that the emergence of P. ramorum in North America and Europe was the result of three independent migration events.     

Dispersal and migration of juvenile African Black Oystercatchers Haematopus moquini

African Black Oystercatchers Haematopus moquini are sedentary as adults. However, colour-ringing of more than 700 juveniles has revealed complex post-fledging movements that vary geographically. Young from the western part of the breeding range either remain within 150 km of their natal site or migrate 1500–2000 km to one of five discrete nursery areas on the Namib Desert coast of central and northern Namibia, and southern Angola. These nurseries all lie north of the species' breeding range. We calculate that 36–46% of all juveniles born in South Africa migrate to nurseries. Birds return to their natal sites from nurseries at 2–3 years old, but never migrate again. Juveniles from the eastern part of the range undertake 'diffusion dispersal', regularly up to 1000 km, but these journeys mostly end within the breeding range, where there are no nurseries. Very few eastern birds reach nurseries. There is no evidence that movements of western birds are density-dependent responses to hatching date, but long-distance migrants are significantly heavier as chicks than are short-distance dispersers. We hypothesize that a genetic basis exists to these movements, possibly triggered by body condition, that could account not only for the highly dichotomous behaviour of western birds, but also for the intermediate behaviour of eastern birds.     

Dispersal and migration of juvenile African Black Oystercatchers Haematopus moquini

African Black Oystercatchers Haematopus moquini are sedentary as adults. However, colour-ringing of more than 700 juveniles has revealed complex post-fledging movements that vary geographically. Young from the western part of the breeding range either remain within 150 km of their natal site or migrate 1500–2000 km to one of five discrete nursery areas on the Namib Desert coast of central and northern Namibia, and southern Angola. These nurseries all lie north of the species' breeding range. We calculate that 36–46% of all juveniles born in South Africa migrate to nurseries. Birds return to their natal sites from nurseries at 2–3 years old, but never migrate again. Juveniles from the eastern part of the range undertake 'diffusion dispersal', regularly up to 1000 km, but these journeys mostly end within the breeding range, where there are no nurseries. Very few eastern birds reach nurseries. There is no evidence that movements of western birds are density-dependent responses to hatching date, but long-distance migrants are significantly heavier as chicks than are short-distance dispersers. We hypothesize that a genetic basis exists to these movements, possibly triggered by body condition, that could account not only for the highly dichotomous behaviour of western birds, but also for the intermediate behaviour of eastern birds.     

The land planarian Australoplana sanguinea var. alba at a horticultural site in New Zealand

Morphometric data and general observations of habitat conditions, feeding behaviour and reproductive biology are presented for the land planarian Australoplana sanguinea var. alba, based upon a population established at a garden centre in Alexandra, South Island, New Zealand. The flatworm species considered in this study appears to be identical to an alien flatworm initially referred to as Geoplana sanguinea (Moseley) var. alba (Dendy) which has successfully colonised areas of the British Isles over the past few decades. The study also highlights the importance of garden centres and nurseries as modified habitats that provide favourable conditions for terrestrial planarians, implying that exotic flatworm species have the potential to spread and exist in pockets world-wide.     

Person-to-person transmission of Giardia lamblia in day-care nurseries.

In an outbreak of giardiasis at two day-care nurseries in metropolitan Toranto Giardia lamblia appeared to be transmitted person to person. No common source of infection could be found. The proportions of children infected in the two nurseries were 39% and 17%; infection was spread to 7% and 23% of their household contacts. Of the infected children and household contacts 26% and 30% respectively of those for whom detailed information could be obtained were symptomatic. Canadian children were more likely to be infected and symptomatic than were immigrant children attending the nurseries. The most susceptible ages for infection were 1 to 3 years. The results of this study suggest that all children in day-care nurseries who are infected with G. lamblia should be treated, regardless of whether they are symptomatic.     

Managing the 2004/05 anthrax outbreak in Queen Elizabeth and Lake Mburo National Parks, Uganda

In August 2004, hippo mortality in the waters of Kazinga Channel, Lakes George and Edward within Queen Elizabeth National Park (QENP) was observed. Veterinary investigation confirmed the disease killing hippos to be anthrax, using clinical, postmortem and laboratory diagnosis, including the polymerase chain reaction technique. Anthrax is believed to have occurred in QENP in 1959, 1962 and 1991 amongst Hippopotamus amphibious but these was not as devastating as the outbreak of 2004–2005. During the outbreak, 306 hippopotami representing 11.63%, 63 zebras representing 1.47%, 60 buffaloes representing 0.9%, thirteen warthogs representing 0.69%, twelve kobs representing 0.07%, three waterbucks representing 0.09% and five elephants representing 0.02% died. A multisectoral National Taskforce was set up, to among other things contain the disease at source and halt its spread. Carcass disposal by burying and burning, decontamination of disposal sites by 10% formaldehyde, ring vaccination of cattle and sheep using blanthrax vaccine and community sensitization, were carried out by the taskforce. A surveillance programme is in place.     

Movement of outbreak populations of mountain pine beetle: influences of spatiotemporal patterns and climate

Insect outbreaks exert landscape-level influences, yet quantifying the relative contributions of various exogenous and endogenous factors that contribute to their pattern and spread remains elusive. We examine an outbreak of mountain pine beetle covering an 800 thousand ha area on the Chilcotin Plateau of British Columbia, Canada, during the 1970s and early 1980s. We present a model that incorporates the spatial and temporal arrangements of outbreaking insect populations, as well as various climatic factors that influence insect development. Onsets of eruptions of mountain pine beetle demonstrated landscape-level synchrony. On average, the presence of outbreaking populations was highly correlated with outbreaking populations within the nearest 18  km the same year and local populations within 6 km in the previous two years. After incorporating these spatial and temporal dependencies, we found that increasing temperatures contributed to explaining outbreak probabilities during this 15  yr outbreak. During collapse years, landscape-level synchrony declined while local synchrony values remained high, suggesting that in some areas host depletion was contributing to population decline. Model forecasts of outbreak propensity one year in advance at a 12 by 12  km scale provided 80% accuracy over the landscape, and never underestimated the occurrence of locally outbreaking populations. This model provides a flexible approach for linking temperature and insect population dynamics to spatial spread, and complements existing decision support tools for resource managers.     

Spatial dynamics in the absence of dispersal: acorn production by oaks in central coastal California

We examined spatial patterns and spatial autocorrelation (synchrony) of annual acorn production in three species of oaks (genus Quercus ) over A 288 km transect in central coastal California. Over small (within-site) distances of <4 km, synchrony of acorn production between individual trees wits significant but varied through time and. for coast live oaks Q. agrifolia. differed al two sites 135 km apart. On a larger geographic scale, valley Q. lobata and blue Q. douglasii oaks exhibited significant synchrony in most distance categories between trees and sites up to 135 km apart and. in the case of coast live oaks, up to the maximum extent of the transect. Spatial patterns over this geographic scale also differed among species, with valley and blue oaks, but not coast live oaks, exhibiting distinct declines in synchrony of acorn production with distance. Interspecific synchrony in acorn production was generally lower than that within species but still significant over the entire extent of the survey. Spatial synchrony between sites was to some extent related to the same environmental variables previously found to correlate with annual acorn production within a site, suggesting that the environmental factors determining acorn production locally also influence spatial patterns over larger geographic areas. These results demonstrate that mast-fruiting in oaks occurs not only on a widespread geographic scale but also across species. They also confirm that synchrony over large geographic areas and complex spatial patterns varying in time can occur in systems where dispersal does not occur and thus environmental variability (the Moran effect) alone is likely to be driving spatial dynamics.     

Biological control of Phytophthora ramorumon rhododendron

Phytophthora ramorum was found in Poland in 2000 as the causal agent of rhododendron blight. Besides eradication of diseased plants and rhododendron growing around, chemical and biological control of the pathogen is necessary. In this study in vitro activity of grapefruit extract and chitosan in the inhibition of P. ramorum growth and sporulation and their efficacy in the control of leaf and stem rot development was evaluated. Amendment of V8 juice agar and soil leachate with grapefruit extract resulted in the inhibition of colony growth and sporulation of P. ramorum. Zoosporangia were more susceptible to the extract than pathogen hyphae and chlamydospores. Chitosan only slightly inhibited the colony growth and zoosporngia production. Spraying of rhododendron inoculated with P. ramorum with grapefruit extract at conc. 165 microg/cm3 inhibited 2-3 times the spread of necrosis on stems and leaves. Pre- and postinoculation spraying of rhododendrons with chitosan at conc. of 1000 microg/cm3 suppressed the disease spread about 40%.     

扎龙自然保护区丹顶鹤(Grus japonensis)巢的内分布型及巢域

为了探讨丹顶鹤繁殖种群的空间分布,2002～2006年的4～5月份,在黑龙江扎龙国家级自然保护区,采用定点观察法、无样地取样法、GPS定位等研究方法和分布距离指数、最近邻体法等衡量指标对丹顶鹤(Grus japonensis)巢的内分布型及巢域进行了研究.结果表明:(1)扎龙保护区丹顶鹤巢的内分布型,I2002=2.140>2,I2003=2.048>2,I2004=2.093>2, I2006=3.263>2,均为聚集分布;(2)在假设扎龙保护区丹顶鹤巢域面积等于领域面积、巢域形状为圆形且所有个体面积大小相等的前提下,丹顶鹤的巢域为(0.510±0.019)km2,年度间有所差异,分别为2002年(0.542±0.257)km2、2003年(0.569±0.067)km2、2004年(0.557±0.054)km2、2006年(0.344±0.119)km2.分析表明,丹顶鹤对于栖息生境的整体分布和繁殖微生境质量的变化具有一定适应和应答的能力.为了更有效地验证本文的研究结果并对丹顶鹤进行保护,还有待于长期监测并进一步研究.     

Field studies of potato leaf roll virus spread in south-eastern Scotland, 1962–1969, in relation to aphid populations and other factors

Between 1962 and 1967 spread of potato leaf roll virus (PLRV) and the pattern of potato crop infestation by common potato aphids was investigated at sites in the counties of East Lothian, West Lothian, Midlothian and Berwickshire. Within this area aphid activity and the extent of PLRV spread varied considerably both within years and between years.
Macrosiphum euphorbiae activity as measured by the angle of colonization method was as well correlated with PLRV spread as that for Myzus persicae , and in certain years Aulacorthum solani and Aphis fabae may become common enough to have an effect. Spread was not well correlated with site altitude or with distance from the market garden area of Musselburgh, previously thought to be the main regional overwintering centre for aphids. Evidence is presented of the more general distribution of market gardening in the area which may account for these variations. Results from infector units of different sizes and bulk samples suggest, as do earlier findings, that in southern Scotland PLRV spread is mainly from sources within the crop. The practical implications for potato certification in the region are discussed.     

Satellite‐tracking of Northern Pintail Anas acuta during outbreaks of the H5N1 virus in Japan: implications for virus spread

We fitted Northern Pintail Anas acuta in Japan with satellite transmitters and monitored their spring migration movements relative to locations where the highly pathogenic H5N1 avian influenza virus was detected in Whooper Swans Cygnus cygnus in 2008. Pintails were assumed not to be infected with the H5N1 virus at the time they were marked because capture occurred between 2 and 5 months before reported outbreaks of the virus in Japan. We assessed spatial and temporal overlap between marked birds and occurrence of the virus and tracked Pintails after they departed outbreak locations. Eight of 66 (12.1%) Northern Pintails marked with satellite transmitters used wetlands in Japan where the H5N1 virus was detected in Whooper Swans. Apparent survival did not differ between Pintails that used H5N1 sites and those that did not. However, the proportion of Pintails that migrated from Japan was significantly lower among birds that used H5N1 sites compared with those that did not (0.50 vs. 0.79). Northern Pintails were present at the H5N1 sites from 1 to 88 days, with five birds present at the sites from 0 to 7 days prior to detection of the virus in Swans. The six Pintails observed to depart H5N1 sites did so within 2–77 days of the reported outbreaks and moved between 6 and 1200 km within 4 days of departure. Four Pintails migrated to eastern Russia. After their departure from outbreak sites, Northern Pintails made long‐distance migrations within the period when newly infected ducks would shed the H5N1 virus. This supports a hypothesized mechanism by which a highly pathogenic avian influenza virus could be spread by migratory birds.