Development of a construct-based risk assessment framework for genetic engineered crops

Experience gained in the risk assessment (RA) of genetically engineered (GE) crops since their first experimental introductions in the early nineties, has increased the level of familiarity with these breeding methodologies and has motivated several agencies and expert groups worldwide to revisit the scientific criteria underlying the RA process. Along these lines, the need to engage in a scientific discussion for the case of GE crops transformed with similar constructs was recently identified in Argentina. In response to this need, the Argentine branch of the International Life Sciences Institute (ILSI Argentina) convened a tripartite working group to discuss a science-based evaluation approach for transformation events developed with genetic constructs which are identical or similar to those used in previously evaluated or approved GE crops. This discussion considered new transformation events within the same or different species and covered both environmental and food safety aspects. A construct similarity concept was defined, considering the biological function of the introduced genes. Factors like environmental and dietary exposure, familiarity with both the crop and the trait as well as the crop biology, were identified as key to inform a construct-based RA process.     

Towards better use of Indonesian peatlands with paludiculture and low-drainage food crops

The current drainage-based peatland management systems in Indonesia result in high fire risks, soil subsidence and CO₂ emissions. This study aims to assess different alternatives of peatland crops in order to help prevent further degradation of peatlands in Indonesia. We focus on tropical peatland crops that provide food and that are of particular interest to smallholders. We compare various peatland food crops that are commonly grown with no drainage (paludiculture) or drainage below 50 cm in our study area, Central Kalimantan, Indonesia in terms of sustainability, profitability, scalability of the market and acceptability to farmers. Our results show that sago (Metroxylon sagu), banana (Musa paradisiaca) and pineapple (Ananas comosus) followed by water spinach/kangkong (Ipomoea aquatica), kelakai/edible fern (Stenochlaena palustris), illipe nut/tengkawang (Shorea spp.), dragon fruit (Hylocereus undatus), mangosteen (Garcinia mangostana) and sweet melon/melon (Cucumis melo) are the best options based on the aggregated scores for these criteria (but precaution should be taken when planting crops that require low drainage). Sago palm and illipe nut have the highest scores for both sustainability and scalability of market, whereas banana, pineapple and sweet melon have the highest scores in term of the scalability of market and acceptability to farmers. We also address key opportunities and bottlenecks for the development of paludiculture food crops and present recommendations for the implementation of paludiculture in Indonesian peatlands.

     

植物遗传转化技术的应用

综述了植物遗传化技术主要的应用领域,该技术为培育抗病虫害植物、高产优质植物、抗逆性强植物、产动物产品植物提供了新的有效手段,开创了育种的新时代,取得了很多可喜的成果,并显示出巨在的发展潜力和广阔而美好的应用前景。     

草坪植物遗传转化的研究进展

从草坪植物组织培养与植株再生体系的建立、转基因的研究现状以及转基因育种的应用前景和存在的问题入手,综述了近年来草坪植物遗传转化的研究进展,并对草坪植物遗传转化的几种主要方法作了较为详细的阐述。     

Diagnosis of viruses infecting essential-oil plant crops by using immunoenzyme analysis

The use of the EIA point technique permitted the detection of viruses affecting essential-oil plants. The method is simple, highly specific, sensitive and can be used for checking seedlings prior to planting.     

植物遗传转化中抑菌剂的选择

农杆菌介导法进行植物遗传转化, 在农杆菌和外植体共培养后, 为使转化的外植体正常生长, 必须选择适宜的抑菌剂进行除菌。本文通过抑菌圈试验和稀释法试验测试了发根农杆菌pRi15834、pRiA₄b 、pRi1724 、pRiA13 对三种头孢霉素的敏感性, 其中头孢曲松钠的抑菌效果最好, 最适宜浓度为100~300 mg/L。     

Towards a better production of bacterial exopolysaccharides by controlling genetic as well as physico-chemical parameters

Bacterial extracellular polymeric substances, which are basically bacterial metabolites, have currently become a subject of great concern of modern day microbiologists and biotechnologists. Among these metabolites, bacterial exopolysaccharides or EPS, in particular, have gained a significant importance. EPS are formed by the bacteria in their late exponential or stationary phase of growth under special situations for specific purposes. They take part in the formation of bacterial biofilms. There is a great diversity in the types of EPS. Strikingly enough, a same species of bacterium can produce different types of EPS under different situations. The importance of EPS is largely because of their different applications in various industries. Now that the bacterial EPS has got the potentiality to become an upcoming tool in various futuristic applications of human benefit, the focus currently develops towards how better they can be produced in the laboratory by promoting the favorable factors for their production. While studying with different EPS forming bacteria, both the intrinsic factors like genetic configuration of the bacteria and the extrinsic factors like culture conditions under the influence of different physico-chemical parameters in order to maximize the EPS production have been taken into consideration. Both the factors have proved their worth. Hence, towards a better outcome for EPS production, it is indicated that a genetic manipulation of the bacteria should be synchronized with a proper selection of its culture condition by controlling different physico-chemical parameters.

     

Uptake of isolated plant chromosomes by plant protoplasts

For mass isolation of plant metaphase chromosomes, cultured cells of wheat (Triticum monococcum) and parsley (Petroselinum hortense) were synchronized by hydroxyurea and colchicine treatment. This synchronization procedure resulted in high mitotic synchrony, especially in suspension cultures of parsley in which 80% of the cells were found to be at the metaphase stage. Mitotic protoplasts isolated from these synchronized cell cultures served as a source for isolation of chromosomes. The described isolation and purification method yielded relatively pure chromosome suspension. The uptake of the isolated plant chromosomes into recipient wheat, parsley, and maize protoplasts was induced by polyethylene-glycol treatment. Cytological studies provided evidences for uptake of plant chromosomes into plant protoplasts.Abbreviations PEG polyethylene glycol - HU hydroxyruea - C colchicine - HUC hydroxyurea and colchicine - CIM chromosome isolation medium - TCM Tris chromosome medium     

Customizing cell signaling using engineered genetic logic circuits

Cells live in an ever-changing environment and continuously sense, process and react to environmental signals using their inherent signaling and gene regulatory networks. Recently, there have been great advances on rewiring the native cell signaling and gene networks to program cells to sense multiple noncognate signals and integrate them in a logical manner before initiating a desired response. Here, we summarize the current state-of-the-art of engineering synthetic genetic logic circuits to customize cellular signaling behaviors, and discuss their promising applications in biocomputing, environmental, biotechnological and biomedical areas as well as the remaining challenges in this growing field.     

Thirty years of plant transformation technology development

Technology development is seminal to many aspects of basic and applied plant transgenic science. Through the development and commercialization of genetically modified crops, the evolution of plant transgenic technologies is also relevant to society as a whole. In this study, literature statistics were used to uncover trends in the development of these technologies. Publication volume and impact (citation) over the past 30 years were analysed with respect to economic zones, countries, species and DNA delivery method. This revealed that, following a dramatic expansion in the 1980s, publications focusing on the development of transgenic technology have been slowing down worldwide since the early mid-1990s, except in a few leading Asian countries. The implications of these trends on the future of plant transgenic science as a whole are discussed.     

Multi-sensor plant imaging: Towards the development of a stress-catalogue

Agricultural production is limited by a wide range of abiotic (e.g. drought, waterlogging) and biotic (pests, diseases and weeds) stresses. The impact of these stresses can be minimized by appropriate management actions such as irrigation or chemical pesticide application. However, further optimization requires the ability to diagnose and quantify the different stresses at an early stage. Particularly valuable information of plant stress responses is provided by plant imaging, i.e. non-contact sensing with spatial resolving power: (i) thermal imaging, detecting changes in transpiration rate and (ii) fluorescence imaging monitoring alterations in photosynthesis and other physiological processes. These can be supplemented by conventional video imagery for study of growth. An efficient early warning system would need to discriminate between different stressors. Given the wide range of sensors, and the association of specific plant physiological responses with changes at particular wavelengths, this goal seems within reach. This is based on the organization of the individual sensor results in a matrix that identifies specific signatures for multiple stress types. In this report, we first review the diagnostic effectiveness of different individual imaging techniques and then extend this to the multi-sensor stress-identification approach.     

Shoot apical meristem: A sustainable explant for genetic transformation of cereal crops

Summary Immature zygotic embryo has been the widely used explant source to develop embryogenic callus lines, cell suspensions and protoplasts for transformation of cereal crops including maize, wheat, rice, oat, barley, sorghum, and millet. However, the lack of competence of immature embryos in certain elite lines is still a barrier to rontine production of transgenic cereal crops in certain commercial cultivars. In addition, a great deal of effort is required to produce immature embryos, manipulate cultures, of immature embryos or their cell suspensions, and cryoperserve cultures for further use. In addition, undifferentiated cells may have reduced regenerability after a few months, of in vitro culture. Alternative explants and regeneration systems for efficient transformation of cereal crops are needed to avoid or reduce the above limitations. During the past decade, scientists have successfully manipulated the shoot apical meristerms from seedlings of maize oat, sorghum, millet, wheat, and barley in an effort to develop a less genetype-dependent and efficient cereal regneration system that can be maintained in vitro for long pertiods of time without the need for cryopreservation. Furthermore, apical mesistem regeneration systems were used to stably transform maize, wheat, rice, oat, barley, sorghum, and millet.     

Novel and potential application of cryopreservation to plant genetic transformation

The world population now is 6.7 billion and is predicted to reach 9 billion by 2050. Such a rapid growing population has tremendously increased the challenge for food security. Obviously, it is impossible for traditional agriculture to ensure the food security, while plant biotechnology offers considerable potential to realize this goal. Over the last 15 years, great benefits have been brought to sustainable agriculture by commercial cultivation of genetically modified (GM) crops. Further development of new GM crops will with no doubt contribute to meeting the requirements for food by the increasing population. The present article provides updated comprehensive information on novel and potential application of cryopreservation to genetic transformation. The major progresses that have been achieved in this subject include (1), long-term storage of a large number of valuable plant genes, which offers a good potential for further development of novel cultivars by genetic transformation; (2), retention of regenerative capacity of embryogenic tissues and protoplasts, which ensures efficient plant regeneration system for genetic transformation; (3), improvement of transformation efficiency and plant regeneration of transformed cells; (4), long-term preservation of transgenic materials with stable expression of transgenes and productive ability of recombinant proteins, which allows transgenic materials to be stored in a safe manner before being analyzed and evaluated, and allows establishment of stable seed stocks for commercial production of homologous proteins. Data provided in this article clearly demonstrate that cryo-technique has an important role to play in the whole chain of genetic transformation. Further studies coupling cryotechnique and genetic transformation are expected to significantly improve development of new GM crops.     

In vitro plant regeneration and genetic transformation of Dichanthium annulatum

Optimization of in vitro plant regeneration and genetic transformation of apomictic species such as Dichanthium annulatum would enable transfer of desirable genes. Seven genotypes of this grass species were screened through mature seed explant for embryogenic callus induction, callus growth and quality (color and texture), and shoot induction. Genotype IG-1999, which produced highly embryogenic, rapidly growing good-quality callus capable of regenerating at a high frequency, was selected for transformation experiments. Using a binary vector (pCAMBIA1305), frequency of GUS expression was compared between two methods of transformation. Bombardment of embryogenic calli with gold particles coated with pCAMBIA1305 at a distance of 11 cm, pressure of 4 bars, and vacuum of 27 Hg passing through 100 muM mesh produced maximum GUS expression (23%). Agrobacterium infection was maximum at an optical density of 2.0 when cocultured under vacuum for 15 min and cocultivated for 3 days at 28 degrees C in constant dark on MS medium of pH 5.8 with 3 mg/l 2,4-D, and 400 muM acetosyringone. Among two binary vectors used for Agrobacterium-mediated transformation, pCAMBIA1301 showed higher frequency of GUS expression while pCAMBIA1305 recorded more of the GUS spots per callus. Supplementation of acetosyringone in the cocultivation medium was found indispensable for Agrobacterium-mediated transformation. Injuring the calli through gold particle bombardment before their cocultivation with Agrobacterium improved the transformation efficiency. Several transgenic plants were developed using the PIG method, while stable GUS-expressing calli were multiplied during selection on MS medium containing 250 mg/l cefotaxime and 50 mg/l hygromycin, incubated in constant dark. A highly significant difference was observed between two methods of transformation for both frequency of GUS expression and GUS spots per callus. PIG-mediated transformation resulted in higher GUS expression compared to the Agrobacterium method. These results demonstrate that Dichanthium annulatum is amenable to Agrobacterium-mediated genetic transformation using a binary vector.     

植物钾吸收基因及其遗传转化的研究进展

综述了近年来已分离和克隆的与植物钾离子吸收有关的基因及其在遗传转化方面的研究进展,对应用生物工程技术改良植物的钾营养性状进行了讨论。     

Engineering plants for tomorrow: how high-throughput phenotyping is contributing to the development of better crops

High-throughput plant phenotyping has been advancing at an accelerated rate as a response to the need to fill the gap between genomic information and the plasticity of the plant phenome. During the past decade, North America has seen a stark increase in the number of phenotyping facilities, and these groups are actively contributing to the generation of high-dimensional, richly informative datasets about the phenotype of model and crop plants. As both phenomic datasets and analysis tools are made publicly available, the key to engineering more resilient crops to meet global demand is closer than ever. However, there are a number of bottlenecks that must yet be overcome before this can be achieved. In this paper, we present an overview of the most commonly used sensors that empower digital phenotyping and the information they provide. We also describe modern approaches to identify and characterize plants that are resilient to common abiotic and biotic stresses that limit growth and yield of crops. Of interest to researchers working in plant biochemistry, we also include a section discussing the potential of these high-throughput approaches in linking phenotypic data with chemical composition data. We conclude by discussing the main bottlenecks that still remain in the field and the importance of multidisciplinary teams and collaboration to overcome those challenges.