Riparian flooded forests of the Orinoco and Amazon basins: a comparative review

This paper compares the non-deltaic, riparian-flooded forests of the Orinoco and Amazon River basins. Ecological relationships between these forests and their environments that can be useful in establishing schemes for biodiversity conservation are identified. Adaptations of species to flow seasonality, flooding intensity, sedimentation pattern and nutrient depletion are described. The variability and diversity of riparian-flooded forests is related to (i) landscape evolution (regional-scale, long-term), (ii) water quality (basin scale, long-term) and (iii) hydrology and geomorphology (sector-scale, medium-term). The floristic analysis has produced a preliminary list of 242 tree species common to the riparian-flooded forests of both basins. This relatively high number of species is related to connectivity between the riparian corridors of both basins and the effective operation of dispersal mechanisms. Highly oligotrophic environments add uniqueness at the regional scale through the evolution of endemic species presenting adaptations not only to flooding but also to nutrient depletion. The process of genetic diversification and the evolution of genotypes adapted to flooding are suggested to explain longitudinal gradients at tributary junctions and floodplain-upland ecotones where current fluvial dynamics are unpredictable over ecological time scales. The paper presents information that may be used to devise appropriate measures to evaluate sites for riparian biodiversity conservation and management.     

Forest structure and tree species composition of the understory of two central Amazonian várzea forests of contrasting flood heights

We investigated species composition, distribution, and forest structure of understory trees (≥1 m height, <10 cm diameter at breast height) in two late-successional várzea forests subject to contrasting levels of inundation within the Mamirauá Sustainable Development Reserve, western Brazilian Amazon, and compared it with the overstory flora at the same study sites. In total, 1486 individuals and 116 woody species were recorded on an area totaling 3140 m². Individual densities and tree species richness were considerably higher in the high várzea than in the low várzea, which suggests that the heights and durations of the annual inundations are the main factor limiting species regeneration. In addition, approximately one third of the recorded species with densities ≥8 individuals showed regular or random spatial distribution patterns, which suggests that floodwaters act on dispersal strategies and species establishment.Independent of the forest type, floristic similarity between the understory and the overstory amounted to approximately 35%, and to approximately 10% when compared to other understory inventories in Amazonian várzea. Although the inventoried area of the understory amounted to only 16% of that of the overstory, species richness accounted for approximately 52-56% of that of the overstory. The results indicate that the understory flora of várzea forests is distinct and that it significantly increases local tree species richness. The understory flora of várzea forests therefore should be addressed in floristic inventories that provide the basis for regional and/or basin-wide estimations of tree diversity.     

Fish Communities in Central Amazonian White- and Blackwater Floodplains

In Amazonian floodplains, the flood cycle of the river is becoming the dominant seasonal factor, and fish communities are found to fluctuate greatly over the year. During inundation, fish migrate into floodplain forests to feed on fruits and seeds, in an area more than 300000km² in size. To document patterns of species diversity, distribution, abundance and temporal dynamics and in order to describe the ecological importance of the inundated forest, floodplain fish were captured using variously sized gill nets in white and black water areas inside and outside the floodplain forests during low, rising, high and falling water level in 1990 and 1991. Dominance varies to some extent in white water between floodplain forest (0.06) and open water (0.11) while it is unchanged in black water (0.04). Black water fish communities were more diverse. Most abundant among white water fish were Liposarcus pardalis, Pygocentrus nattereri, and Pellona flavipinnis, for example, or Plagioscion squamsissimus, Serrasalmus rhombeus, and Serrasalmus manueli in black water. Among the most abundant white water fish, Colossoma macropomum, Mylossoma duriventre and Osteoglossum bicirrhosum occurred almost exclusively in inundated forests. Of the black water species there were a large number of species which were captured only in inundated forest, such as Geophagus cf. altifrons, Hoplias malabaricus, Osteoglossum bicirrhosum and Uaru amphiacanthoides. Catches varied with sample site, water level and direction of water level change. The average CPUE in white and black water was 190 and 41g fishm^–2 and day, respectively, with maximum yields at low water and minimum yields at high water. Comparing rising and falling water levels, a significantly higher quantity of fishes was captured at falling water level. In black water, fish catches from the floodplain forest exceeded the open water catch by 183 to 550%, depending on season. Differences in respect of white water are smaller (106–281%). Fish communities in the area under investigation seem to be stochastically assembled, with significant differences between white and black water only. Many fishes move into the floodplain forest not only to feed but probably also for other reasons – to seek shelter, for example.     

Diurnal distribution and behavioral responses of fishes to extreme hypoxia in an Amazon floodplain lake

Synopsis Because of the need for surface access for aquatic surface respiration (ASR), fish density increases were demonstrated for the open water of a floodplain lake during severe hypoxia. This indicates an O₂-induced diurnal pattern of horizontal migrations between the zone of macrophyte cover and open water. Supplemental experimental investigations seem to suggest that species such as characoids,Colossoma macropomum andSchizodon fasciatum, deviate from this pattern. During long periods of oxygen depletion, they return to the region of macrophyte growth and survive there without displaying the usual kind of ASR. Mortality studies in net cages exposed in natural water bodies confirmed that only these two species are able to survive severe hypoxia beneath macrophyte cover. The possibility of an O₂-input through the root system of plants is discussed. The O₂-concentration has a significant influence on the locomotory behavior and the frequency of opercular movement in characoids. There is significantly less locomotory activity beneath the macrophytes during periods of oxygen depletion among those species not forced to migrate than among those in the open water regions, where normal ASR behavior is possible.     

The role of recruitment and dispersal limitation in tree community assembly in Amazonian forests

Background: Species composition of plant communities is shaped by the interplay between dispersal limitation, environmental filters and stochastic events.

Aims: The aim of this work was to investigate the effects of dispersal limitation and environmental filtering on tree recruitment. To accomplish this, we employed the unified neutral theory of biodiversity and biogeography to examine migration within the metacommunity, defined as a set of interacting local communities linked by the dispersal of multiple potentially interacting species.

Methods: We sampled 12,975 individuals with dbh ≥ 1 cm in 26 1-ha permanent plots, including habitats of terra firme, transitional forests, várzea and campinarana, on the upper Madeira River, Brazilian Amazon.

Results: Campinarana drew individuals from outside the metacommunity species pool at a mean probability of recruitment of 0.06, a much lower probability than terra firme (0.31), transitional (0.21) and várzea forests (0.22). Environmental variables, such as water table depth, soil texture and fertility, were related to differences in community assembly.

Conclusions: Species abundance distribution and diversity patterns of plant assemblages in a large river landscape in the Amazon highlight the importance of environmental heterogeneity that conditions beta-diversity. The high variation in recruitment probabilities from the metacommunity species pool to local communities suggests high habitat variability in the process of maintaining patterns of local diversity.     

Physiological responses to flooding and light in two tree species native to the Amazonian floodplains

In Amazonian floodplains, plant survival is determined by adaptations and growth strategies to effectively capture sunlight and endure extended periods of waterlogging. By measuring gas exchange, quantum efficiency of photosystem 2 (PSII), and growth parameters, we investigated the combined effects of flooding gradients and light on two common evergreen floodplain tree species, the light-tolerant Cecropia latiloba and the shade-tolerant Pouteria glomerata. Individual plants were subjected to different combinations of light and flooding intensity in short-term and long-term experiments. Plants of C. latiloba lost all their leaves under total submersion treatments (plants flooded to apex and with reduced irradiance) and showed highest maximum assimilation rates (A_max) in not flooded, high light treatments (6.1 μmol CO₂ m⁻² s⁻¹). Individuals of P. glomerata showed similar patterns, with A_max increasing from 1.9 μmol CO₂ m⁻² s⁻¹ under total flooding to 7.1 μmol CO₂ m⁻² s⁻¹ in not flooded, high light treatments. During the long-term flooding experiment, quantum efficiency of PSII (F_v/F_m) of C. latiloba was not affected by partial flooding. In contrast, in P. glomerata F_v/F_m decreased to values below 0.73 after 120 days of total flooding. Moreover, total submergence led P. glomerata to reduce significantly light saturation point (LSP), as compared to C. latiloba. For both species morphological adjustments to long-term flooding, such as the production of adventitious roots, resulted in reduced total biomass, relative growth rate (RGR) and leaf mass ratio (LMR). Growth increase in C. latiloba seemed to be more limited by low-light than by flooding. Therefore, the predominant occurrence of this species is in open areas with high light intensities and high levels of inundation. In P. glomerata flooding induced high reductions of growth and photosynthesis, whereas light was not limiting. This species is more abundant in positions where irradiance is reduced and periods of submergence are slightly modest. We could show that the physiological requirements are directly responsible for the flooding (C. latiloba) and shade (P. glomerata) tolerance of the two species, which explains their local distribution in Amazonian floodplain forests.     

The co-occurrence of ectomycorrhizal,arbuscular mycorrhizal,and dark septate fungi in seedlings of four members of the Pinaceae

Although roots of species in the Pinaceae are usually colonized by ectomycorrhizal (EM) fungi, there are increasing reports of the presence of arbuscular mycorrhizal (AM) and dark septate endophytic (DSE) fungi in these species. The objective of this study was to determine the colonization patterns in seedlings of three Pinus (pine) species (Pinus banksiana, Pinus strobus, Pinus contorta) and Picea glauca x Picea engelmannii (hybrid spruce) grown in soil collected from a disturbed forest site. Seedlings of all three pine species and hybrid spruce became colonized by EM, AM, and DSE fungi. The dominant EM morphotype belonged to the E-strain category; limited colonization by a Tuber sp. was found on roots of Pinus strobus and an unknown morphotype (cf. Suillus–Rhizopogon group) with thick, cottony white mycelium was present on short roots of all species. The three fungal categories tended to occupy different niches in a single root system. No correlation was found between the percent root colonized by EM and percent colonization by either AM or DSE, although there was a positive correlation between percent root length colonized by AM and DSE. Hyphae and vesicles were the only AM intracellular structures found in roots of all species; arbuscules were not observed in any roots.     

Host and habitat preferences of polypore fungi in Micronesian tropical flooded forests

The distribution and ecological impacts of plant-associated fungi is determined in large part by their degree of specificity for particular host species or environmental conditions. Here we evaluate the host and habitat preferences among the Aphyllophorales, a guild of wood-decay basidiomycete fungi usually considered to be host generalists. We determined the patterns of host association in three well-defined, floristically distinct, tropical wetlands — freshwater forested wetlands, saltwater mangrove forests, and peatlands with scattered trees — on the islands of Kosrae and Pohnpei in the Federated States of Micronesia. Of 33 fungal species, 20 were locally rare. Of the 11 species sufficiently common to evaluate habitat specificity, nine showed significant habitat preferences. Of eight species common enough to evaluate within-habitat host specificity, six showed strong host preferences. All except one of the nine habitat-specialized fungi showed either statistically significant host specificity or strong numerical biases toward single host species. Our results suggest that host preferences may be important in shaping the assemblages of wood-decay fungi, and that the effect of environment on the distribution of susceptible plant species, rather on the fungi themselves, may ultimately drive the apparent habitat specificity of many fungi.     

The study of fungi in drinking water

The occurrence of fungi in drinking water has received increased attention in the last decades, and fungi are now generally accepted as drinking water contaminants. The knowledge about the occurrence and diversity of fungi in water has increased considerably from a low knowledge base. However, the relevance of waterborne fungi for water quality and human health is poorly understood and still conflicting. Scientific reports on effective treatment against fungi in water are also few. This article presents a review of the literature on fungal water studies, including some general results, and considerations of significance, limits, contradictions, precautions, and practical consequences.     

The role of sterols in morphogenetic processes and dimorphism in fungi

The review considers the fundamental biological problem of fungal dimorphism as an adaptive reaction to adverse impacts. Primary attention is paid to sterols, phospholipids, storage lipids, and fatty acids. The structural and biological functions of sterols are considered, as well as their role in membrane stabilization under stress and their relation to morphogenetic processes in mycelial fungi, of which many are pathogenic. Data on the biosynthesis of the main fungal sterol, ergosterol, are presented, as well as data on the inhibitors of this process and on the mutants deficient in its particular stages. Ergosterol biosynthesis is also considered in terms of its relation to the composition of the fungal cell wall, which is the cell shape-determining structure, and to the intensity of chitin synthesis, a process in which azole derivatives play a role. Data obtained by the authors are presented that show the role of changes in the composition of sterols, phospholipids, storage lipids, and unsaturated fatty acids of resting cells in the induction of yeastlike growth in mucoraceous fungi.     

The role of environmental, root, and microbial biomass characteristics in soil respiration in temperate secondary forests of Northeast China

For secondary forests, the major forest resources in China (accounting for more than 50% of the national total), soil respiration (R _S) and the relationship between R _S and various biotic/abiotic factors are poorly understood. The objectives of the present study were to examine seasonal variations in soil respiration during the growing season, and to explore the factors affecting the variation in soil respiration rates for three forest types (Mongolian oak, Manchurian walnut and mixed forests) of temperate secondary forest in Northeast China. The results showed that (1) the maximum total R _S rate occurred in July, following a bell-shaped curve with season, (2) for all forest types, the total R _S was significantly influenced by soil temperature (P < 0.01), and did not significantly correlate with soil moisture, (3) compared with fine root biomass, coarse root biomass was more closely related with the root respiration in mixed forest (R ² = 0.711, P = 0.017) and in Manchurian walnut forest (R ² = 0.768, P = 0.010), and (4) microbial biomass carbon (MBC) and nitrogen were significantly correlated with heterotrophic R _S in Mongolian oak forest (R ² = 0.664, P = 0.026; R ² = 0.784, P = 0.008, respectively) and in mixed forest (R ² = 0.918, P = 0.001; R ² = 0.967, P = 0.001, respectively). We can conclude that in temperate secondary forests: (1) the R _S rate and the relationships between R _S and abiotic/biotic factors change greatly with forest types, and (2) R _S is strongly influenced by soil temperature, MBC, microbial biomass nitrogen and coarse root biomass in temperate secondary forests.     

The role of freezing in setting the latitudinal limits of mangrove forests

Mangrove trees dominate coastal vegetation in tropical regions, but are completely replaced by herbaceous salt marshes at latitudes above 32 degrees N and 40 degrees S. Because water deficit can increase damage caused by freezing, we hypothesized that mangroves, which experience large deficits as a result of saline substrates, would suffer freeze-induced xylem failure. Vulnerability to freeze-induced xylem embolism was examined in the most poleward mangrove species in North America, in an area where freezing is rare but severe, and in Australia, in an area where freezing is frequent but mild. Percentage loss in hydraulic conductivity was measured following manipulations of xylem tension; xylem sap ion concentration was determined using X-ray microanalysis. Species with wider vessels suffered 60-100% loss of hydraulic conductivity after freezing and thawing under tension, while species with narrower vessels lost as little as 13-40% of conductivity. These results indicate that freeze-induced embolism may play a role in setting the latitudinal limits of distribution in mangroves, either through massive embolism following freezing, or through constraints on water transport as a result of vessel size.     

The role of taste in food selection by African apes: implications for niche separation and overlap in tropical forests

Ripe fruit eating shapes the behavior of most of the apes. Gorillas (Gorilla gorilla) and chimpanzees (Pan troglodytes) are very different sizes and, consequently, have been traditionally viewed as ecologically distinct, but few studies have explored the behavioral and physiological foundations of their diets. Debate continues on the extent that large-bodied gorillas may be less selective and more opportunistic fruit eaters than chimpanzees. Taste responses have been predicted to relate to body size and digestive strategies. This study employs laboratory research on taste perception and discrimination among captive zoo-housed chimpanzees and relates it to previous work on gorillas to better characterize diets and niche separation among these apes. During the captive trials, differences were recorded in consumption patterns of water and varying concentrations of dilute aqueous fructose (sweet) and tannic acid solutions (astringent), compounds commonly found in wild foods. The chimpanzees exhibited similar preference thresholds for fructose (50 mM) to other primates studied. They exhibited slightly lower inhibition thresholds for tannic acid solutions than gorillas, but higher than smaller primates studied to date. These preliminary findings suggest that tannin tolerance may well be mediated by body size, though possible species differences in salivary proteins or other sensory differences remain to be explored. This research furthers our efforts to understand the roles of body size and physiological adaptations in shaping diet and niche separation of chimpanzees and gorillas.     

The role of the motile tubular vacuole system in mycorrhizal fungi

Mycorrhizal fungi, to be effective for the plant, must be able to transfer mineral nutrient elements from sites of uptake at hyphal tips across various distances to the exchange region in the mycorrhiza. Vacuoles are likely to be important in this transport, since they contain elements of nutritional significance in abundance. In tip cells of hyphae of most fungi –- known to include three ectomycorrhizal basidiomycetes, an ericoid mycobiont, and two arbuscular mycorrhizal fungi –- the vacuoles form a motile tubular reticulum. The vacuoles are most active in hyphal tips, but non-motile vacuoles at a distance from the tip can be induced to become motile by environmental changes. Neither the tubular vacuolar reticulum nor its contents are properly preserved by conventional fixation and embedding. Vacuolar tubules are readily shown in vivo with fluorescent tracers, throughout the extramatrical mycelium and in outer hyphae of the sheath in eucalypt mycorrhizas synthesised with Pisolithus sp., but they have proved harder to label in field-collected ectomycorrhizas and ericoid mycorrhizas. Freeze-substitution does preserve the structure of vacuoles and vacuolar tubules, and careful anhydrous techniques allow them to be microanalysed, indicating high content of K and P in vacuoles of hyphal tips, and also in sheath and Hartig net of ectomycorrhizas. Vacuoles contain polyphosphate in diffuse, non-granular form. Polyphosphate is present right up to the tip region of hyphae as well as in sheath and Hartig net: thus important mineral nutrient elements are present at both ends of the long hyphal transport pathway. Exactly what happens in between, however, remains to be elucidated.     

The role of saltwort (Batis maritima L.) in regeneration of degraded mangrove forests

While saltwort (Batis maritima L.) is common in the fringe mangrove forests of southwest Florida, its role in regeneration of degraded mangrove communities is not known. Given the potential encroachment and subsequent degradation of mangrove communities by sea-level rise, it is important to quantify the effect of early-colonizing vegetation to early mangrove seedling survival. A greater number of mangrove seedlings were observed in existing B. maritima patches compared to surrounding mudflats. A planting experiment was designed to determine whether B. maritima was responsible for the observed pattern. Black mangrove (Avicennia germinans L.) seedlings, raised in a nursery, were planted in previously established B. maritima patches and on mudflats with and without nursery-raised B. maritima. There was significantly lower mortality of A. germinans seedlings when planted in existing B. maritima patches (69%), compared to seedlings planted on the mudflats (93%), demonstrating that existing B. maritima improved A. germinans seedling survival. Nursery-raised B. maritima had lower mortality on open mudflats (28%), suggesting that it can tolerate conditions, which make it an early colonizer of newly available habitats. The primary mechanism proposed for improving seedling success is a slight increase in elevation provided by the dense root network of established B. maritima. These findings have implications for scientists and managers anticipating the response of mangroves to sea-level rise.     

The role of landscape configuration in plant composition of floodplain forests across different physiographic areas

Questions: What is the relative importance of landscape variables compared to habitat quality variables in determining species composition in floodplain forests across different physiographic areas? How do species composition and species traits relate to effects of particular landscape variables? Do lowland and mountain areas differ in effects of landscape variables on species composition? Location: Southern Czech Republic. Methods: A total of 240 vegetation relevés of floodplain forests with measured site conditions were recorded across six physiographic areas. I tested how physiographic area, habitat quality variables and landscape variables such as current land‐cover categories, forest continuity, forest size and urbanization influenced plant species composition. I also compared how mountain and lowland areas differ in terms of the relative importance of these variables. To determine how landscape configuration affects the distribution of species traits, relationships of traits and species affinity with landscape variables were tested. Results: Among landscape variables, forest continuity, landscape forest cover and distance to nearest settlement altered the vegetation. These variables also influenced the distributions of species traits, i.e. life forms, life strategies, affinity to forest, dispersal modes, seed characteristics, flooding tolerance and Ellenberg indicator values for nitrogen, light, moisture and soil reaction. Nevertheless, physiographic area and habitat quality variables explained more variation in species composition. Landscape variables were more important in lowland areas. Forest continuity affected species composition only in lowlands. Conclusions: Although habitat quality and physiographic area explained more vegetation variability, landscape configuration was also a key factor influencing species composition and distribution of species traits. However, the results are dependent on forest geographical location, with lowland forests being more influenced by landscape variables compared to mountain forests.     

The time of urea treatment and its effects on the succession of ammonia fungi in two warm temperate forests in Japan

We studied the effects of the timing of urea treatment on the succession of ammonia fungi. In two evergreen Castanopsis cuspidata forests and in one deciduous Quercus serrata forest, we applied 343g urea to 25 and 15 plots of 0.5m², respectively, at three different times of the year. Ten of the early-phase (EP) species, considered to be saprotrophic, and 6 of the late-phase (LP) ones, considered ectomycorrhizal, fruited. In both phases, the commencement, peak, and cessation of fruiting took place simultaneously among all the plots treated at the same time. The fruiting occurred in summer and autumn. Quantity and size of the fruit bodies was larger in the LP than in the EP species. Fruiting of EP species was affected by the treatment time and that of LP species by interaction of the treatment time and vegetation type. EP was short and occurred as one period, whereas LP was long and occurred as two or more fruiting seasons. We found that species composition, dominant species, and degree of its dominance in fruiting of the ammonia fungi are predictable for different treatment times of the year and different vegetation types.     

The role of aquaporins in root water uptake

The capacity of roots to take up water is determined in part by the resistance of living tissues to radial water flow. Both the apoplastic and cell-to-cell paths mediate water transport in these tissues but the contribution of cell membranes to the latter path has long been difficult to estimate. Aquaporins are water channel proteins that are expressed in various membrane compartments of plant cells, including the plasma and vacuolar membranes. Plant aquaporins are encoded by a large multigene family, with 35 members in Arabidopsis thaliana, and many of these aquaporins show a cell-specific expression pattern in the root. Mercury acts as an efficient blocker of most aquaporins and has been used to demonstrate the significant contribution of water channels to overall root water transport. Aquaporin-rich membranes may be needed to facilitate intense water flow across root tissues and may represent critical points where an efficient and spatially restricted control of water uptake can be exerted. Roots, in particular, show a remarkable capacity to alter their water permeability over the short term (i.e. in a few hours to less than 2-3 d) in response to many stimuli, such as day/night cycles, nutrient deficiency or stress. Recent data suggest that these rapid changes can be mostly accounted for by changes in cell membrane permeability and are mediated by aquaporins. Although the processes that allow perception of environmental changes by root cells and subsequent aquaporin regulation are nearly unknown, the study of root aquaporins provides an interesting model to understand the regulation of water transport in plants and sheds light on the basic mechanisms of water uptake by roots.     

The role of spider cocoons in controlling desiccation

Summary The abilities of the cocoons of the spiders Mecynogea lemniscata and Argiope aurantia to protect the enclosed egg and spiderling stages from desiccation were investigated in the laboratory under controlled humidities, and in the field under ambient conditions. For M. lemniscata, which has a relatively small clutch (8–30 eggs) and remains in the cocoon for approximately 9–10 months, removal of the cocoon had no effect on water loss from the egg stage, nor did it adversely affect hatching or molting success. Cocoon removal did, however, significantly affect water loss and, consequently, survival in the spiderling stage at all humidities in the laboratory and in the field. The importance of the cocoon for survival is probably related to the unusually long time M. lemniscata spiderlings spend in the cocoon overwintering. For A. aurantia, which has a substantially larger clutch size (300–1400 eggs) and remains in the cocoon for a shorter 6–7 months, cocoon removal had no effect on water loss, egg hatching success, molting success, nor spiderling survival. The lack of an effect suggests that other factors (e.g., relative humidity at the oviposition site, or a large clutch size) may be more important in controlling water loss for A. aurantia.     

The role of bacteria in pH increase of nettle water

The investigation was designed to elucidate and explain the pH increase observed when a water extract of stinging nettle,Urtica dioica, was supplied to plants grown in sand or peat culture. The pH, bacterial number, organic acid content, and NH ₄ ⁺ and NO ₃ ^– content were determined in aerated nettle water, sterilised (UV-treated) nettle water and nutrient solution at intervals during 48 h. The pH increase was closely linked to increase in aerobic bacteria and the simultaneous decrease in organic acids and NH ₄ ⁺ concentration in the media. Consequently, the pH rise in nettle water is due to consumption of organic acids by bacteria and the accompanying shift of the acid-base equilibrium towards a more basic state.