Activity: Structure,Genesis, and Unit of Analysis

One of the most notable phenomena in Soviet psychology since the late '70s has been discussion of the relationship between communication and activity [8,13,18,19,21,23]. I consider the following formulation of the problem, given here in its most general form, the most constructive: communication and activity are indubitably interrelated, but communication (in contrast to perception, memory, etc.) cannot, in any constructive way, be regarded as a type of activity and analyzed within the framework of Leont 'ev's paradigm (activity—action—operation; motive—goal—condition). This formulation of the problem is useful primarily in terms of the further progress of the theory of activity: it quite incisively focuses on one essential point that has been inadequately dealt with in the theory of activity, namely, an analysis of the social means and mechanisms of human activity, both collective and individual.     

Bioaltruism reconsidered

Altruistic behavior is often regarded as sociobiology's most central theoretical problem, but is it? Altruism in biology, bioaltruism, has many meanings, which can be grouped into two categories. The first I will callcommon bioaltruism. It is primarily of ethological relevance. The second,evolutionary bioaltruism, is a special category in evolutionary respects in that it may indeed pose a problem for evolutionary theory. These categories are logically independent. Moreover, both of them are logically different from altruism in its everyday psychological or moral sense. Sociobiological examples of bioaltruistic behavior concern bioaltruism in the first sense only, so the theoretical problem ‘altruism’ is supposed to pose, is indeed nothing but a theoretical problem and the bioaltruism that actually occurs has no evolutionary relevance. Nevertheless, evolutionary theory is relevant to our understanding of the possibility of common bioaltruism, and that possibility — even though bioaltruism is conceptually different from ethical altruism — is relevant for ethicists: it sheds light on what we can ask people to do or not to do.     

A Re-Examination of the New Guinea Highlands Sacred Flute Complex: The Spirit Cries Played During Ommura Male Initiations

This paper describes the use of 'sacred flutes' in male initiation ceremonies in the Eastern Highlands of Papua New Guinea. Most previous discussions of the flutes have regarded them as either reflections of existing social organizations or as symbolic of the dominance of men over women. The alternate approach presented here derives much from the communication theory of Barth — since initiations entail the transmission of knowledge. The notion of creative and stagnant sectors of the ritual carpus — also used by Barth — is also a useful one in interpreting the use of the flutes.     

Economics, Biology, and Naturalism: Three Problems Concerning the Question of Individuality

The paper examines the ramifications of naturalism with regard to the question of individuality in economics and biology. Economic theory has to deal with whether households, firms, and states are individuals or are mere entities such as clubs, networks, and coalitions. Biological theory has to deal with the same question with regard to cells, organisms, family packs, and colonies. To wit, the question of individuality in both disciplines involves three separate problems: the metaphysical, phenomenist, and ontological. The metaphysical problem is concerned with purposeful action: Is the firm or organism exclusively the product of efficient causality (optimization) or is it motivated by final causality (purposefulness)? The phenomenist problem is interested in the substantiality of essences: Is the firm's or organism's scheme of institutions/traits deep or is it extraneous to identity? The ontological problem is related to the issue of reductionism: Is the behavior of lower-level organization governed by a pre-constituted entities or is it context-sensitive? The paper finds that theoretical differences run along the naturalist/anti-naturalist divide rather than along disciplinary specialization. Also, the paper finds that it is not inconsistent for the same theorist to be naturalist with regard to one problem and anti-naturalist with respect to the other two problems.     

When and What Parents Tell Children About Race: An Examination of Race-Related Socialization Among African American Families

This article describes a developmental systems approach to applied developmental science (ADS), which provides a framework to design and evaluate technology-rich programs that promote positive development by emphasizing the strengths and assets of young people instead of focusing on diminishing or preventing risk-taking behaviors. Until now, most of the psychoeducational programs conceived within the ADS model have not focused on the role of new technologies in young people's lives. This absence is particularly striking given that, in today's world, new technologies play an important role in different areas of the lives of young people, such as education, entertainment, socialization, and communication. This article presents the concept of identity construction environments (ICE), an interdisciplinary model that proposes guidelines to design and study new technologies purposefully created to promote positive youth development (PYD). Two types of ICE have been developed: one focusing on stand-alone technologies for learning, such as the Zora virtual city; and the other focusing on an approach for developing technologically rich learning contexts, such as the Project Inter-Actions robotics workshops. This article presents both examples of ICE and describes how their design fosters the 6 components of PYD. Initial findings from pilot studies conducted with very different populations of youth engaged in both types of ICE—such as young children, adolescents, and chronically ill children—are presented.     

From the Genome to the Phenome: Tools to Understand the Basic Biology of Plasmodium falciparum

Malaria plagues one out of every 30 humans and contributes to almost a million deaths, and the problem could worsen. Our current therapeutic options are compromised by emerging resistance by the parasite to our front line drugs. It is thus imperative to better understand the basic biology of the parasite and develop novel drugs to stem this disease. The most facile approach to analyse a gene's function is to remove it from the genome or inhibit its activity. Although genetic manipulation of the human malaria parasite Plasmodium falciparum is a relatively standard procedure, there is no optimal method to perturb genes essential to the intraerythrocytic development cycle—the part of the life cycle that produces the clinical manifestation of malaria. This is a severe impediment to progress because the phenotype we wish to study is exactly the one that is so elusive. In the absence of any utilitarian way to conditionally delete essential genes, we are prevented from investigating the parasite's most vulnerable points. This review aims to focus on the development of tools identifying essential genes of P. falciparum and our ability to elicit phenotypic mutation.     

"The Key to Human Psychology"

This article investigates the notebook kept by Lev Vygotsky during the first half of 1926. In addition to discussing the notebook's structure, content, and time frame, the article analyzes its significance within the context of the development of Vygotsky's ideas. Among the notebook's content discussed here are: supplementary material to The Psychology of Art; a preliminary outline for "The Historical Meaning of the Crisis in Psychology"; the first propositions of cultural-historical theory associated with the idea of sign mediation; an outline for the unwritten monograph "Zoon politikon"; as well as thoughts on a general psychological theory of consciousness that assigns a key role to speech and communication in the genesis of consciousness. Particular attention is paid to Vygotsky's remarks on the ontological status of mental reality and the problem of the psychophysical.     

The MIAmaxent R package: Variable transformation and model selection for species distribution models

The widely used “Maxent” software for modeling species distributions from presence‐only data (Phillips et al., Ecological Modelling, 190, 2006, 231) tends to produce models with high‐predictive performance but low‐ecological interpretability, and implications of Maxent's statistical approach to variable transformation, model fitting, and model selection remain underappreciated. In particular, Maxent's approach to model selection through lasso regularization has been shown to give less parsimonious distribution models—that is, models which are more complex but not necessarily predictively better—than subset selection. In this paper, we introduce the MIAmaxent R package, which provides a statistical approach to modeling species distributions similar to Maxent's, but with subset selection instead of lasso regularization. The simpler models typically produced by subset selection are ecologically more interpretable, and making distribution models more grounded in ecological theory is a fundamental motivation for using MIAmaxent. To that end, the package executes variable transformation based on expected occurrence–environment relationships and contains tools for exploring data and interrogating models in light of knowledge of the modeled system. Additionally, MIAmaxent implements two different kinds of model fitting: maximum entropy fitting for presence‐only data and logistic regression (GLM) for presence–absence data. Unlike Maxent, MIAmaxent decouples variable transformation, model fitting, and model selection, which facilitates methodological comparisons and gives the modeler greater flexibility when choosing a statistical approach to a given distribution modeling problem.     

The Problem of Generalization in the Works of L. S. Vygotsky

An aspect of Vygotsky's psychological theory which is still meaningful as a genuine scientific problem today is the treatment he gave to the structure, function, and formation of generalization as a special means of reflecting reality in human consciousness. Many of the central propositions of the theory — concerning such questions as the role of symbols in the establishment of higher mental functions, the hierarchical structure of consciousness, and the connection between instruction and development — were refined, concentrated, and cast in a new light by the concept of generalization which Lev Semyonovich worked on so intensively in the last years of his life. The problem of generalization is the knot that ties together the fundamental strands of the whole conception. By carefully untying it one can avoid misunderstandings in evaluating some of Vygotsky's propositions, and, even more important, one can then correctly understand his fundamental ideas, which he clearly formulated but was not able to develop fully. The significance of these ideas is such that they belong in the arsenal of modern psychology to resolve burning theoretical and practical problems of the day.     

Time Perception and the Feedback Principle

The psychology of time perception, which is increasingly attracting the attention of researchers, finds its explanation in Lenin's theory of reflection and in the Pavlovian concept of higher nervous activity, which is a confirmation in natural science of the Marxist theory of knowledge. Time exists objectively, and is represented to man — by means of time perception — as one of the fundamental forms of being. The essential features and laws of such perception are determined by the interaction of excitatory and inhibitory cortical processes. However, a number of mechanisms involved in carrying out this process of representation have, as yet, been little investigated. The feedback principle would appear to offer a fruitful approach in this regard. This principle, along with comparison theory, makes possible a new interpretation and generalization of the large amount of experimental data that has already been accumulated on the psychology of temporal perceptions.     

Information theory and the ethylene genetic network

The original aim of the Information Theory (IT) was to solve a purely technical problem: to increase the performance of communication systems, which are constantly affected by interferences that diminish the quality of the transmitted information. That is, the theory deals only with the problem of transmitting with the maximal precision the symbols constituting a message. In Shannon''s theory messages are characterized only by their probabilities, regardless of their value or meaning. As for its present day status, it is generally acknowledged that Information Theory has solid mathematical foundations and has fruitful strong links with Physics in both theoretical and experimental areas. However, many applications of Information Theory to Biology are limited to using it as a technical tool to analyze biopolymers, such as DNA, RNA or protein sequences. The main point of discussion about the applicability of IT to explain the information flow in biological systems is that in a classic communication channel, the symbols that conform the coded message are transmitted one by one in an independent form through a noisy communication channel, and noise can alter each of the symbols, distorting the message; in contrast, in a genetic communication channel the coded messages are not transmitted in the form of symbols but signaling cascades transmit them. Consequently, the information flow from the emitter to the effector is due to a series of coupled physicochemical processes that must ensure the accurate transmission of the message. In this review we discussed a novel proposal to overcome this difficulty, which consists of the modeling of gene expression with a stochastic approach that allows Shannon entropy (H) to be directly used to measure the amount of uncertainty that the genetic machinery has in relation to the correct decoding of a message transmitted into the nucleus by a signaling pathway. From the value of H we can define a function I that measures the amount of information content in the input message that the cell''s genetic machinery is processing during a given time interval. Furthermore, combining Information Theory with the frequency response analysis of dynamical systems we can examine the cell''s genetic response to input signals with varying frequencies, amplitude and form, in order to determine if the cell can distinguish between different regimes of information flow from the environment. In the particular case of the ethylene signaling pathway, the amount of information managed by the root cell of Arabidopsis can be correlated with the frequency of the input signal. The ethylene signaling pathway cuts off very low and very high frequencies, allowing a window of frequency response in which the nucleus reads the incoming message as a varying input. Outside of this window the nucleus reads the input message as an approximately non-varying one. This frequency response analysis is also useful to estimate the rate of information transfer during the transport of each new ERF1 molecule into the nucleus. Additionally, application of Information Theory to analysis of the flow of information in the ethylene signaling pathway provides a deeper insight in the form in which the transition between auxin and ethylene hormonal activity occurs during a circadian cycle. An ambitious goal for the future would be to use Information Theory as a theoretical foundation for a suitable model of the information flow that runs at each level and through all levels of biological organization.Key words: information theory, shannon entropy, frequency systems analysis, Arabidopsis thaliana, ethylene signaling systems, plant genetic networks, circadian cycles     

The individuality of the species: A Darwinian theory? — from Buffon to Ghiselin, and back to Darwin

Since the 1970s, there has been a tremendous amount of literature on Ghiselin's proposal that “species are individuals”. After recalling the origins and stakes of this thesis in contemporary evolutionary theory, I show that it can also be found in the writings of the French naturalist Buffon in the 18th Century. Although Buffon did not have the conception that one species could be derived from another, there is an interesting similarity between the modern argument and that of Buffon regarding the “individuality of species’. The analogy is strong enough to force us to recognize that genuine evolutionary (or Darwinian) questions might be of secondary importance in the discussion. In consequence, the third section of the paper proposes an alternative schema for the “logical structure” of the Darwinian concept of species. Darwin distinguished the problem of the designation of a concrete species, and the problem of its signification of species within his theory of descent? The resulting notion of species involves a logical structure based on the fusion of the logical operations of classification and ordering. The difficulty — and interest — is that this interpretation of species does not entail any precise operational definition of species; it can only tell us what the ultimate signification of classification is within the theory of descent with modification through natural selection.     

Borrowing thy neighbour's genetics: Neural induction and a Brachyury mutant in Xenopus

A recent article by Rao⁽¹⁾ exemplifies a number of new trends in developmental biology, both of technical strategy and approach to the problem of neural induction. Rao introduced into frog embryos a mutant form of a mesodermal gene, Brachyury, and caused ectopic neural differentiation. This essay traces the route from the original Brachyury mutation in mouse to the most likely conclusion of Rao's experiments — suggested previously⁽²⁾ — that neural fate is a default pathway.     

How do communication systems emerge?

Communication involves a pair of behaviours—a signal and a response—that are functionally interdependent. Consequently, the emergence of communication involves a chicken-and-egg problem: if signals and responses are dependent on one another, then how does such a relationship emerge in the first place? The empirical literature suggests two solutions to this problem: ritualization and sensory manipulation; and instances of ritualization appear to be more common. However, it is not clear from a theoretical perspective why this should be the case, nor if there are any other routes to communication. Here, we develop an analytical model to examine how communication can emerge. We show that: (i) a state of non-interaction is evolutionarily stable, and so communication will not necessarily emerge even when it is in both parties'' interest; (ii) the conditions for sensory manipulation are more stringent than for ritualization, and hence ritualization is likely to be more common; and (iii) communication can arise by a third route, when the intention to communicate can itself be communicated, but this may be limited to humans. More generally, our results demonstrate the utility of a functional approach to communication.     

HEALTH,VITAL GOALS,AND CENTRAL HUMAN CAPABILITIES

I argue for a conception of health as a person's ability to achieve or exercise a cluster of basic human activities. These basic activities are in turn specified through free‐standing ethical reasoning about what constitutes a minimal conception of a human life with equal human dignity in the modern world. I arrive at this conception of health by closely following and modifying Lennart Nordenfelt's theory of health which presents health as the ability to achieve vital goals. Despite its strengths I transform Nordenfelt's argument in order to overcome three significant drawbacks. Nordenfelt makes vital goals relative to each community or context and significantly reflective of personal preferences. By doing so, Nordenfelt's conception of health faces problems with both socially relative concepts of health and subjectively defined wellbeing. Moreover, Nordenfelt does not ever explicitly specify a set of vital goals. The theory of health advanced here replaces Nordenfelt's (seemingly) empty set of preferences and society‐relative vital goals with a human species‐wide conception of basic vital goals, or ‘central human capabilities and functionings’. These central human capabilities come out of the capabilities approach (CA) now familiar in political philosophy and economics, and particularly reflect the work of Martha Nussbaum. As a result, the health of an individual should be understood as the ability to achieve a basic cluster of beings and doings—or having the overarching capability, a meta‐capability, to achieve a set of central or vital inter‐related capabilities and functionings.     

Earthen Structures Built by Ilyoplax dentimerosa (Crustacea,Brachyura, Ocypodidae)

Under observation, the small ocypodid crab Ilyoplax dentimerosa was found to commonly build three types of earthen structures: a barricade near its neighbour's burrow, a fence at an intermediate position between the burrows of the builder and its neighbour, and a minishelter near the builder's burrow. The sex ratio of barricade builders was found to be close to 1:1, whereas most of the fence builders were found to be female. Crabs against which barricades and fences were built, were usually smaller than the builders. Both barricade builders and fence builders had, in most cases, minishelters at the side, facing the barricade or the fence. Removal and rebuilding experiments for barricades and fences demonstrated that both structures functioned to deter the approach of the builder's neighbour to the builder's activity site. Fences also had the effect of restraining the movement of the builder toward the fence site.     

The Concept of City Carbon Maps: A Case Study of Melbourne,Australia

Cities are thought to be associated with most of humanity's consumption of natural resources and impacts on the environment. Cities not only constitute major centers of economic activity, knowledge, innovation, and governance—they are also said to be linked to approximately 70% to 80% of global carbon dioxide emissions. This makes cities primary agents of change in a resource‐ and carbon‐constraint world. In order to set meaningful targets, design successful policies, and implement effective mitigation strategies, it is important that greenhouse gas (GHG) emissions accounting for cities is accurate, comparable, comprehensive, and complete. Despite recent developments in the standardization of city GHG accounting, there is still a lack of consistent guidelines regarding out‐of‐boundary emissions, thus hampering efforts to identify mitigation priorities and responsibilities. We introduce a new conceptual framework—based on environmental input‐output analysis—that allows for a consistent and complete reconciliation of direct and indirect GHG emissions from a city. The “city carbon map” shows local, regional, national, and global origins and destinations of flows of embodied emissions. We test the carbon map concept by applying it to the greater metropolitan area of Melbourne, Australia. We discuss the results and limitations of the approach in the light of possible mitigation strategies and policies by different urban stakeholders.     

Multidimensional Human Dynamics in Mobile Phone Communications

In today''s technology-assisted society, social interactions may be expressed through a variety of techno-communication channels, including online social networks, email and mobile phones (calls, text messages). Consequently, a clear grasp of human behavior through the diverse communication media is considered a key factor in understanding the formation of the today''s information society. So far, all previous research on user communication behavior has focused on a sole communication activity. In this paper we move forward another step on this research path by performing a multidimensional study of human sociality as an expression of the use of mobile phones. The paper focuses on user temporal communication behavior in the interplay between the two complementary communication media, text messages and phone calls, that represent the bi-dimensional scenario of analysis. Our study provides a theoretical framework for analyzing multidimensional bursts as the most general burst category, that includes one-dimensional bursts as the simplest case, and offers empirical evidence of their nature by following the combined phone call/text message communication patterns of approximately one million people over three-month period. This quantitative approach enables the design of a generative model rooted in the three most significant features of the multidimensional burst - the number of dimensions, prevalence and interleaving degree - able to reproduce the main media usage attitude. The other findings of the paper include a novel multidimensional burst detection algorithm and an insight analysis of the human media selection process.     

Abstracts

Abstract

The training of dogs usually involves the building of an association between a command word and a given behavior through reinforcement. Whilst the importance of applied learning theory in this process is widely recognized, there has been less emphasis in the scientific literature on the equally important role of interspecific communication in the learning of an instruction. A command is not a simple discriminative stimulus, and involves both verbal and non-verbal signals. It is also frequently offered in a variety of environmental contexts, which affect its contiguity and the perceived contingency between the verbal element of the message and its consequences during learning. Species-specific behavioral tendencies in human trainers, and perceptual biases in the canine trainee have been shown empirically to affect performance. There are many paralingual aspects to the communication which is involved in the training process; vocalics refers to the non-verbal vocal sounds involved, and it has been shown that short rising, higher pitched notes are more effective at eliciting motor activity during dog training. Other aspects of non-verbal communication at this time including kinesics—body language (especially oculesics—eye position and activity), physical appearance and proxemics—the structuring of the space at the time of instruction, and they have also been shown to affect canine performance. In addition, it would seem that dogs may not generalize the learning of commands as readily as is frequently implied in many texts. This has obvious implications for both the welfare and training of dogs, and deserves consideration in the training of other species.     

Role of water in protein folding,oligomerization, amyloidosis and miniprotein

The essential involvement of water in most fundamental extra‐cellular and intracellular processes of proteins is critically reviewed and evaluated in this article. The role of water in protein behavior displays structural ambivalence; it can protect the disordered peptide‐chain by hydration or helps the globular chain‐folding, but promotes also the protein aggregation, as well (see: diseases). A variety of amyloid diseases begins as benign protein monomers but develops then into toxic amyloid aggregates of fibrils. Our incomplete knowledge of this process emphasizes the essential need to reveal the principles of governing this oligomerization. To understand the biophysical basis of the simpler in vitro amyloid formation may help to decipher also the in vivo way. Nevertheless, to ignore the central role of the water's effect among these events means to receive an uncompleted picture of the true phenomenon. Therefore this review represents a stopgap role, because the most published studies—with a few exceptions—have been neglected the crucial importance of water in the protein research. The following questions are discussed from the water's viewpoint: (i) interactions between water and proteins, (ii) protein hydration/dehydration, (iii) folding of proteins and miniproteins, (iv) peptide/protein oligomerization, and (v) amyloidosis. Copyright © 2014 European Peptide Society and John Wiley & Sons, Ltd.