Using chorotypes to deconstruct biogeographical and biodiversity patterns: the case of breeding waterbirds in Europe

Aim To deconstruct the biodiversity pattern of the 152 waterbird species breeding in Europe to better understand its multiple causal processes. Location Continental Europe, Iceland and the British Isles. Methods We considered the orders that are typically comprised by swimming, diving or wading birds, which inhabit marshes, fens, peatlands and fresh, brackish or salt waters, including coastal waters. We used the 55 main river basins of Europe as geographical units, and searched for either chorotypes (groups of similar species distributions) or gradual replacement of species throughout the river basins. Chorotypes were recognized by applying a probabilistic classification method to the distributions. Then we used GLM to characterize the extent and the species richness of each chorotype according to energy availability (higher levels of environmental energy favouring the presence of species), climatic stress due to an excess of energy, availability of water, productivity, seasonality and surface area. Results One hundred and forty species significantly aggregate into nine chorotypes. The other 12 species, most of them marine, are centred on Great Britain, dropping away progressively on coasts further away from there. Differences in either the availability of energy or climatic stress significantly characterized the distribution of seven chorotypes comprising 90.8% of the species. Main conclusions Chorotypes are meaningful and useful to deconstruct biodiversity patterns. Our results suggest that energy is the main factor related to the biogeographical patterns of breeding waterbirds in Europe, and provide an insight into regional trends of species richness previously analysed with a habitat‐scale perspective.     

Modelling chorotypes of invasive vertebrates in mainland Spain

We investigated the existence of chorotypes – assemblages of species with similar geographical ranges – of invasive species in a host territory, and their potential use to advocate similar control or management strategies for species in the same chorotype. We analysed the distribution of 13 exotic terrestrial vertebrate species (six birds, six mammals, and one reptile) with well‐known distributions in mainland Spain. We used the presence/absence data on a grid of 10 km × 10 km UTM cells from the Atlases of terrestrial vertebrates of Spain. These data were aggregated to a grid of 50 km × 50 km UTM cells, because it entailed no loss of meaningful information and allowed dealing with a much lower number of cells. Using cluster analysis and a probabilistic assessment of the classification, we identified seven significant chorotypes: four multispecific and three monospecific. The compound chorotypes grouped together species that tended to share certain characteristics about their introduction, release cause, establishment, and spread. We modelled the chorotypes using a favourability function based on a generalized linear model and 31 variables related to spatial situation, topography, lithology, climatic stability, energy availability, water availability, disturbances, productivity, and human activity. Climatic factors affected the favourability for every chorotype, whereas human variables had a high influence in the distribution of three chorotypes involving eight species. On the basis of these variables, we identified favourable areas for all the chorotypes in mainland Spain. The favourability for a chorotype in an area may be a useful criterion for evaluating the local conservation concern due to the whole set of species. Favourable but unoccupied areas can be used to infer possible colonization areas for each chorotype. We recommend using chorotypes to optimize broad‐scale surveillance of invasive species.     

Distribution patterns of the small mammals (Insectivora and Rodentia) in a transitional zone between the Eurosiberian and the Mediterranean regions

To determine, by means of quantitative analyses, the distribution patterns of the insectivores and rodents in Catalonia using physiographical regions as Operative Geographical Units (OGUs). Catalonia (north‐eastern Iberian Peninsula). Based on the presence/absence of twenty‐five small mammals in thirteen physiographical regions, which were used as OGUs, the following aspects were studied: (a) identification of biotic boundaries; (b) determination of chorological association of species; (c) climatic characterization of the biotic regions and the chorotypes. Groups of biotic regions and species were established, and their statistical significance was tested. The possible effect of several climatic factors on these groupings was studied using discriminant analyses. A significant biotic boundary was found to separate the central and eastern Pyrenees from the remaining physiographical regions. The climatic variables that defined this boundary were related to the severity and the availability of environmental energy. Four chorotypes were identified. One chorotype was constituted by Pyrenean or Pre‐Pyrenean species, an association determined by their mid‐European requirements; another chorotype was formed by Eurosiberian species, but showed a variable degree of tolerance to Mediterranean conditions; a third chorotype included species with a wide distribution that are Mediterranean, anthropic, generalist or have very specific habitats; and finally the fourth chorotype was constituted by a strictly Mediterranean species. The climatic factors that accounted for the distribution of these chorotypes were the mean July temperature and the mean annual precipitation. We conclude that the axial zone of the Pyrenees, except the coastal portion, determines two biotic regions in Catalonia. As for the classification of species, using quantitative techniques for the first time, we offer a new biogeographicalal configuration for the small mammals in this temperate‐Mediterranean transition.     

Chorotypes of seaweeds from the western Mediterranean Sea and the Adriatic Sea: An analysis based on the genera Audouinella (Rhodophyta), Cystoseira (Phaeophyceae) and Cladophora (Chlorophyta)

The aim of the present paper is to identify the possible existence of groups of species in the genera Audouinella (Rhodophyta), Cystoseira (Phaeophyceae) and Cladophora (Chloropyta) with significantly similar distribution patterns (chorotypes), in the western Mediterranean Sea and the Adriatic Sea. Of the 98 species studied, 59 were grouped into 11 chorotypes, whereas 39 species remained ungrouped. Thirty‐eight species were included in a generalist chorotype, whereas 6 chorotypes were monospecific. The relationships with the environmental factors that could explain the chorotypes are discussed.     

Morphological variability in Lophyra flexuosa (Fabricius, 1787) (Coleoptera,Cicindelidae) in desert countries is affected by sexual dimorphism and geographic aspect

Lophyra flexuosa, a eurytopic tiger beetle characterized by long phenological activity, wide geographic and altitudinal distribution, and occurring in the highest number of habitats among all Cicindelidae known from North Africa, was chosen to study its geographic variation in morphology and sexual dimorphism. Here, we found significant sexual dimorphism exhibited in larger body size of females and longer mandibles in males, which can be explained by different roles of particular sexes in courtship. Moreover, we recorded significant differences in body sizes between western and eastern Maghreb populations which could suggest genetic isolation between these populations. As the species is related to habitats placed close to the water reservoirs, which in the desert countries are under significant human pressure (including climate change), we expect a reduction of habitat occupied by this taxon. Therefore, the geographic morphological variability that we observe today in the tiger beetle Lophyra flexuosa in the future could lead to speciation.     

On the concept of chorotype

Recent reviews of the meaning of the word ‘chorotype’ in biogeography have led to contrasting definitions and a confusion of concepts. This is because ‘chorotype’ has been used by different authors to express two different concepts: (1) groups of species with overlapping ranges (overall distributions) and (2) groups of species with a similar distribution within a certain area. To avoid confusion, I suggest the term ‘global chorotype’ be used to indicate a group into which species with similar ranges can be classified; and ‘regional chorotype’ be used for a group of species with similar distributions within a certain region. Although the global chorotype represents the world‐wide spatial responses of species to historical and environmental pressures, and does not vary with the area under consideration, a particular species might be classified into different regional chorotypes in different study areas.     

Quantitative phytogeography of the Italian Beech Forests

This paper presents a numerical analysis of the distribution patterns in Europe and adjoining regions of 242 vascular plant species occurring in the Italian beech forests. The classification of a matrix of species and of 531 Operational Geographic Units (OGUs) led to recognition of 15 different phytogeographic elements (chorotypes). The joint distribution of the species belonging to each chorotype is shown by a chorogram, which is a geographic map obtained by computer processing of the distributional data. Some of the chorograms show the main distributional centers for the beechwood flora in southern Europe: northwestern Balkan Peninsula and eastern Alps, southern Balkan Peninsula, Maritime Alps, northern Apennines, southern Apennines. Only 20% of the species are limited to narrow areas in southern Europe, and were not able to expand considerably their ranges in postglacial times. Migration from the refugia and colonization of vast areas in central and northern Europe led to intensive speciation phenomena, occurring chiefly through the formation of neopolyploid species. Several south European, narrow-ranging species, can be considered as palaeopolyploids with relict character. There is a good relationship between distribution and ecology of the chorotypes.Abbreviations OGU Operational Geographic Unit - OGS Operational Geographic Set - OCS Operational Character Set     

Spatial Distribution of Dorylaimid and Mononchid Nematodes from Southeast Iberian Peninsula: Chorological Relationships among Species

The spatial distribution of 138 Dorylaimid and Mononchid species collected in a natural area from the Southeast Iberian Peninsula was studied. A chorological classification was used to examine distribution patterns shared by groups of species. Eighty species were classified into 14 collective and 16 individual chorotypes. The geographical projections of several collective chorotypes are illustrated along with their corresponding distribution maps. The importance of this analysis to nematological study is briefly discussed.     

Thorn,spine and prickle patterns in the Italian flora

Spinescence refers to the presence of sharp appendages of various origins with ecological, evolutionary or biogeographic significance. This research was conducted to explore patterns and adaptive processes of thorns, spines and prickles in the Italian flora. We compiled an inventory of 401 spiny plants taking into account the following attributes: type of spinescence, family, biological form, chorotype, bioclimate and habitat. Then, we evaluated the incidence of plants with each attribute, the co-occurrence of various types of spinescence, the associations among spinescence types and biological forms and families, the structure of data across spinescence types, thermotypes and habitats. The spatial distributions and the adaptive processes of plants with various types of spinescence revealed that these patterns are driven by evolutionary, biogeographic and ecological factors, thus supporting the hypothesis that interactive processes of selective pressures and phylogenetic constraints have influenced the evolution of spinescences.     

Ecology and mating competition influence sexual dimorphism in Tanganyikan cichlids

Sexual selection contributes strongly to the evolution of sexual dimorphism among animal taxa. However, recent comparative analyses have shown that evolution of sexual dimorphism can be influenced by extrinsic factors like mating system and environment, and also that different types of sexual dimorphism may present distinct evolutionary pathways. Investigating the co-variation among different types of sexual dimorphism and their association with environmental factors can therefore provide important information about the mechanisms generating variation in sexual dimorphism among contemporary species. Using phylogenetic comparative analyses comparing 49 species of Tanganyikan cichlid fishes, we first investigated the pairwise relationship between three types of sexual dimorphism [size dimorphism (SSD), colour dimorphism (COD) and shape dimorphism (SHD)] and how they were related to the strength of pre- and post-copulatory sexual selection. We then investigated the influence of ecological features on sexual dimorphism. Our results showed that although SSD was associated with the overall strength of sexual selection it was not related to other types of sexual dimorphism. Also, SSD co-varied with female size and spawning habitat, suggesting a role for female adaptations to spawn in small crevices and shells influencing SSD in this group. Further, COD and SHD were positively associated and both show positive relationships with the strength of sexual selection. Finally, the level of COD and SHD was related to habitat complexity. Our results thus highlight distinct evolutionary pathways for different types of sexual dimorphism and further that ecological factors have influenced the evolution of sexual dimorphism in Tanganyikan cichlid fishes.     

Analyzing niche stability and biogeography of Late Ordovician brachiopod species using ecological niche modeling

Gauging the potential impacts of environmental change on the geographic distributions of species is a central area of modern biogeographic analysis, often involving complex models of species–environment interactions. The geographic distribution of fossil species can also provide a framework to test the impact of environmental change on biogeography and ecological niches of species, yet few paleontological analyses have attacked this question in deep time. Herein we present a quantitative biogeographic analysis to examine the stability of ecological niches and geographic ranges of rhynchonelliform brachiopods during an interval of sea level change preserved in Upper Ordovician strata of the Cincinnati Arch.The intensive sampling, excellent preservation, and numerous prior paleoecological and sedimentological analyses within the tri-state region of Kentucky, Indiana, and Ohio provide a robust framework for detailed paleobiogeographic study. Quantitative biogeographic modeling methods incorporating GIS (Geographic Information Systems) are utilized in order to spatially analyze the geographic ranges of brachiopod species of the Corryville and Mt. Auburn Formations of the C3 (uppermost Maysvillian) depositional sequence.This study employs the ecological niche modeling program GARP (Genetic Algorithm using Rule-set Prediction) to predict the geographic distribution of eight brachiopod species during three time slices within the C3 sequence. This method estimates a species’ geographic range by modeling the ecological niche of the species based on a set of known species occurrence data coupled with environmental data inferred from sedimentologic proxies. Once environmental tolerances for a species are modeled; the species is predicted to occur wherever its preferred set of environmental conditions occurs within the study region.Distributional patterns were reconstructed for three time slices during the C3 sequence. Recovered range predictions were quantitatively analyzed for evidence of temporal range changes. Results indicate that average species range within the study area decreased and species tracked their preferred niche with high fidelity during the transition from the early to middle portions of the C3 depositional sequence, an interval of rapid relative sea level change. However, during the transition from the middle to late portions of the sequence, gradual shallowing within the basin and development of discontinuous habitat patches correlates with niche evolution of five of the eight species modeled. The average area a species occupied within the basin increased during this interval, but there is a mixed response including both increases and decreases in range size within the study group. In general, the species that exhibit niche evolution increased their geographic range size while those that continue to track their niche with high fidelity experience a decrease in geographic range size. During the latter half of the C3 sequence, previously continuous habitats become fragmented, thereby isolating individual populations and providing a mechanism for niche evolution. The rate of sea level change and the corresponding fragmentation of previously continuous habitats into isolated patches appear to be the primary controls on both mean geographic range size and relative degree of niche evolution.     

Coevolution between flight morphology,vertical stratification and sexual dimorphism: what can we learn from tropical butterflies?

Occurrence patterns are partly shaped by the affinity of species with habitat conditions. For winged organisms, flight‐related attributes are vital for ecological performance. However, due to the different reproductive roles of each sex, we expect divergence in flight energy budget, and consequently different selection responses between sexes. We used tropical frugivorous butterflies as models to investigate coevolution between flight morphology, sex dimorphism and vertical stratification. We studied 94 species of Amazonian fruit‐feeding butterflies sampled in seven sites across 3341 ha. We used wing–thorax ratio as a proxy for flight capacity and hierarchical Bayesian modelling to estimate stratum preference. We detected a strong phylogenetic signal in wing–thorax ratio in both sexes. Stouter fast‐flying species preferred the canopy, whereas more slender slow‐flying species preferred the understorey. However, this relationship was stronger in females than in males, suggesting that female phenotype associates more intimately with habitat conditions. Within species, males were stouter than females and sexual dimorphism was sharper in understorey species. Because trait–habitat relationships were independent from phylogeny, the matching between flight morphology and stratum preference is more likely to reflect adaptive radiation than shared ancestry. This study sheds light on the impact of flight and sexual dimorphism on the evolution and ecological adaptation of flying organisms.     

Relationship of sexual dimorphism in canine size and body size to social,behavioral, and ecological correlates in anthropoid primates

Among anthropoid primates there are interspecific differences in the degree of sexual dimorphism in both body size and canine size. Within the suborder body size dimorphism and canine size dimorphism are positively correlated,r=0.76. This correlation suggests that the two dimorphisms are equally developed in some species, while in other species there is a differential degree of sexual dimorphism. An analysis of these results and their relation to social organization and other ecological variables reveals: (1) the degree of canine size dimorphism is closely related to the amount of male intrasexual selection in a given mating system; and (2) the degree of body size dimorphism is also related to male intrasexual selection, but may be modified (either enhanced or diminished) by selection pressure from factors such as habitat, diet, foraging behavior, antipredator behavior, locomotory behavior, and female preference.     

Revision of the plant geographical territories of Israel and Sinai

The phytogeographical territories of Israel and Sinai are revised using a large mass of species distribution data. With the help of chorotype frequencies for 25 km² individual squares in Israel, territories were defined on the basis of the first two most frequent chorotypes. The similarity of boundaries in the resulting phytogeographical map with a physiognomic map suggests that the latter may be used in preliminary stages of the preparation of plant geographical maps.     

Predicted impact of climate change on European bats in relation to their biogeographic patterns

There has been considerable recent interest concerning the impact of climate change on a wide range of taxa. However, little is known about how the biogeographic affinities of taxa may affect their responses to these impacts. Our main aim was to study how predicted climate change will affect the distribution of 28 European bat species grouped by their biogeographic patterns as determined by a spatial Principal Component Analysis. Using presence‐only modelling techniques and climatic data (minimum temperature, average temperature, precipitation, humidity and daily temperature range) for four different climate change scenarios (IPCC scenarios ranging from the most extreme A1FI, A2, B2 to the least severe, B1), we predict the potential geographic distribution of bat species in Europe grouped according to their biogeographic patterns for the years 2020–2030, 2050–2060 and 2090–2100. Biogeographic patterns exert a great influence on a species' response to climate change. Bat species more associated with colder climates, hence northern latitudes, could be more severely affected with some extinctions predicted by the end of the century. The Mediterranean and Temperate groups seem to be more tolerant of temperature increases, however, their projections varied considerably under different climate change scenarios. Scenario A1FI was clearly the most detrimental for European bat diversity, with several extinctions and declines in occupied area predicted for several species. The B scenarios were less damaging and even predicted that some species could increase their geographical ranges. However, all models only took into account climatic envelopes whereas available habitat and species interactions will also probably play an important role in delimiting future distribution patterns. The models may therefore generate ‘best case’ predictions about future changes in the distribution of European bats.     

Conserving Biogeography: Habitat Loss and Vicariant Patterns in Endemic Squamates of the Cerrado Hotspot

Little is known about the threat levels and impacts of habitat loss over the Cerrado Squamate fauna. The region is under severe habitat loss due to mechanized agriculture, accelerated by changes in the Brazilian National Forest Code. The Squamate fauna of the Cerrado is rich in endemics and is intrinsically associated with its surrounding microhabitats, which make up a mosaic of phitophysiognomies throughout the region. Herein we evaluate current conservation status of Squamate biogeographic patterns in the Brazilian Cerrado, the single savanna among global biodiversity hotspots. To do so, we first updated point locality data on 49 endemic Squamates pertaining to seven non-random clusters of species ranges in the Cerrado. Each cluster was assumed to be representative of different biogeographic regions, holding its own set of species, herein mapped according to their extent of occurrence (EOO). We then contrasted these data in four different scenarios, according to the presence or absence of habitat loss and the presence or absence of the current protected area (PA) cover. We searched for non-random patterns of habitat loss and PA coverage among these biogeographic regions throughout the Cerrado. Finally, with the species EOO as biodiversity layers, we used Zonation to discuss contemporary PA distribution, as well as to highlight current priority areas for conservation within the Cerrado. We ran Zonation under all four conservation scenarios mentioned above. We observed that habitat loss and PA coverage significantly differed between biogeographic regions. The southernmost biogeographic region is the least protected and the most impacted, with priority areas highly scattered in small, disjunct fragments. The northernmost biogeographic region (Tocantins-Serra Geral) is the most protected and least impacted, showing extensive priority areas in all Zonation scenarios. Therefore, current and past deforestation trends are severely threatening biogeographic patterns in the Cerrado. Moreover, PA distribution is spatially biased, and does not represent biogeographic divisions of the Cerrado. Consequently, we show that biogeographic patterns and processes are being erased at an accelerated pace, reinforcing the urgent need to create new reserves and to avoid the loss of the last remaining fragments of once continuous biogeographic regions. These actions are fundamental and urgent for conserving biogeographic and evolutionary information in this highly imperiled savanna hotspot.     

Spatial Distribution of Dorylaimid and Mononchid Nematodes from the Southeast Iberian Peninsula: Environmental Characterization of Chorotypes

The aim of this study was to determine the incidence of 18 environmental variables in the spatial distribution of 30 chorotypes (species groups with significantly similar distribution patterns) of dorylaimid and mononchid nematodes by means of logistic regression in a natural area in the southeastern Iberian Peninsula. Six variables (elevation, color chroma, clay content, nitrogen content, CaCO₃, and plant community associated) were the most important environmental factors that helped explain the distribution of chorotypes. The distribution of most chorotypes was characterized by some (one to three) environmental variables; only two chorotypes were characterized by five or more variables, and four have not been characterized.     

Biogeographic affinity helps explain productivity-richness relationships at regional and local scales

The unresolved question of what causes the observed positive relationship between large-scale productivity and species richness has long interested ecologists and evolutionists. Here we examine a potential explanation that we call the biogeographic affinity hypothesis, which proposes that the productivity-richness relationship is a function of species' climatic tolerances that in turn are shaped by the earth's climatic history combined with evolutionary niche conservatism. Using botanical data from regions and sites across California, we find support for a key prediction of this hypothesis, namely, that the productivity-species richness relationship differs strongly and predictably among groups of higher taxa on the basis of their biogeographic affinities (i.e., between families or genera primarily associated with north-temperate, semiarid, or desert zones). We also show that a consideration of biogeographic affinity can yield new insights on how productivity-richness patterns at large geographic scales filter down to affect patterns of species richness and composition within local communities.     

Fuzzy chorotypes as a conceptual tool to improve insight into biogeographic patterns

Chorotypes--statistically significant groups of coincident distribution areas--constitute biogeographic units that are fuzzy by nature. This quality has been referred to in the literature but has not been analyzed in depth or methodologically developed. The present work redefines chorotypes as fuzzy sets from a pragmatic perspective and basically focuses on the methodological and interpretative implications of this approach. The amphibian fauna in the Iberian Peninsula was used as an example to explore the fuzzy nature of chorotypes. The method on which this article is based is a widely used technique to define chorotypes. This method involves the fuzziness that is inherent to the identification between degree of similarity and degree of membership and includes a probabilistic analysis of the classification for the objective delimitation of chorotypes. The main innovation of this paper is a procedure to analyze chorotypes as fuzzy biogeographic units. A set of fuzzy parameters to deal with the biogeographic interpretation of fuzzy chorotypes is also described. A computer program has been developed and is freely available. History may be related to the degree of fuzziness of chorotypes. In our example, with amphibian distributions in Iberia, less fuzzy chorotypes could have a historical explanation, and the internal fuzziness of chorotypes increases with their distance to hypothetical Pleistocene refugia.     

Sexual segregation by Masai giraffes at two spatial scales

In this paper alternative explanations for observed patterns of sexual segregation by giraffes are examined at two spatial scales: within-habitats and within-landscape. Habitats are defined as recognizable plant associations and the landscape as the collection of all available habitat types. The study was conducted in Mikumi National Park, Tanzania. At the within-landscape level, all sex and age classes of giraffes exhibited high degrees of preference for riverine habitats. Sex differences in habitat selection were mostly due to females with young, who tended to select open floodplain habitats in which their vigilance time was lowest. Males, and females without young, preferred more heavily-wooded habitat. Habitat preferences were not related to observed habitat-specific forage intake rates for either males or females. Within habitats, male and female giraffes selected different feeding heights, males feeding higher in the canopy than females. Females showed a strong tendency to generalize with respect to feeding height. It is suggested that a sexual dimorphism–body size hypothesis provides a parsimonious explanation for the observed feeding height selection patterns, whereas a reproductive strategy hypothesis can explain sex-differences in habitat selection patterns within the landscape.