Cytochromes and other pigments of dissimilatory sulphate-reducing bacteria

Summary A survey was made of various visible light absorption spectra of whole cells, particulate and soluble fractions and haem extracts of representative strains of all known species of sulphate-reducing bacteria. The previously accepted distinction that Desulfovibrio species contain only a c-type cytochrome whereas Desulfotomaculum species contain only a b-type cytochrome was not confirmed. The pigment contents of the genera Desulfovibrio and Desulfotomaculum were not completely distinct from each other, but both genera had characteristic spectral patterns. Reduced minus oxidized spectra of whole cells and particulate fractions showed the presence of b-type cytochromes in all Desulfotomaculum species and in Desulfovibrio africanus. However, protohaem, the prosthetic group of b-type cytochromes, occurred in haem extracts from all species, although only just detectable in the extract from Desulfovibrio vulgaris NCIB 8303. Particulate c-type cytochromes were found in Desulfotomaculum orientis, Desulfotomaculum nigrificans and all the Desulfovibrio species, but the amount in Desulfotomaculum nigrificans was very small. Only the Desulfovibrio species contained soluble c-type cytochromes. Spectral properties indicated that a d-type cytochrome might exist in species in addition to Desulfovibrio africanus, but no supporting evidence was obtained from results of haem extractions. Some spectra contained peaks which could not be identified.     

Acid-soluble spore proteins of Bacillus subtilis

Acid-soluble spore proteins (ASSPs) comprise about 5% of the total protein of mature spores of different Bacillus subtilis strains. They consist of three abundant species, alpha, beta, and gamma, four less abundant species, and several minor species, alpha, beta, and gamma make up about 18, 18 and 36%, respectively, of the total ASSPs of strain 168, have molecular weights of 5,900, 5,9000, and 11,000, respectively, and resemble the major (A, C, and B) components of Bacillus megaterium ASSPs in several respects, including sensitivity to a specific B. megaterium spore endopeptidase. However, they have pI's of 6.58, 6.67, and 7.96, all lower than those of any of the B. megaterium ASSPs. Although strains varied in the proportions of different ASSPs, to overall patterns seen on gel electrophoresis are constant. ASSPs are located interior to the cortex, presumably in the spore cytoplasm, and are synthesized during sporulation and degraded during germination.     

Can molluscan assemblages give insights into Holocene environmental changes other than sea level rise? A case study from a macrotidal bay (Marennes–Oléron, France)

During the Late Holocene, the rate of sea level rise decreased and climate changes, hydrodynamic processes or anthropogenic impacts became predominant parameters governing the sedimentary infill of estuarine environments. The aim of this study is to describe the response of past benthic mollusc communities to these forcing factors. Mollusc skeletal remains were sampled from three 8000, 5500 and 2600 year-long sedimentary records in the Marennes–Oléron Bay (Atlantic Coast, France), where environmental changes have previously been identified thanks to a combination of very high resolution seismic profiles and sedimentological data. Molluscan assemblages successfully record environmental changes, even at the smallest temporal scale. They provide relevant information regarding bathymetry, salinity, hydrodynamics, oxygen content and sediment supply. In the 8000 year-long record, the transition from an upper to a lower intertidal mudflat community provides evidence of a transgressive phase that occurred between 8000 and 7600 years BP. In the 5500 year-long record, an oyster bank developed on the slopes of a tidal channel has been recovered. The composition of the fossil community and the careful examination of skeletal remains suggest that the channel was hydraulically inefficient, in response to the sediment infilling of its drainage area. In the 2600 year-long record, a soft-bottom, shallow-water, subtidal mollusc community, similar to that found nowadays in the Marennes–Oléron Bay, has been recovered from both lower mixed sand-mud and upper muddy units separated by a major regional unconformity dated to about 1000 years BP. This sharp transition is recorded by a few rare species, and was responsible for the local extinction of the bivalve Lepton squamosum. However, the abundance of the most common species and the quantity of fragmented shells remain stable, which may indicate that mud drape deposition was related to an increase in mud supply rather than a decrease in water energy. The level of detail of the palaeoenvironmental reconstructions varies, depending on the ecological requirements of the species. Stenotypic indicator species provide accurate, quantitative information, whereas eurytypic species add undesired variability to the assemblages. Since fossil molluscs are easy to collect and to identify and provide long-term, smoothed records of environment variations, this study suggests that they can be used prior to any other biological proxy, as a first step into reconstructions of Holocene coastal environments.     

Accumulation of porphyrins and pyrrole pigments by Staphylococcus aureus ssp. anaerobius and its aerobic mutant

Abstract The anaerobic, Gram-positive coccus Staphylococcus aureus ssp. anaerobius and its aerobic mutant MVF-SR, when kept under anaerobic conditions, excreted coproporphyrin (mainly type III) into the medium and enriched uroporphyrin (mainly type I) within the cells.
The rate of porphyrin synthesis stayed practically unaltered when the growth medium was supplemented with 50 μ g/ml 5-aminolevulinic acid (ALA), but was significantly enhanced upon supplementation with hemin (0.5 μ g/ml). When hemin and ALA were given simultaneously, a more than two-fold increase in porphyrin production compared to normal growth medium was observed. These observations indicate a stimulation of porphyrin synthesis in S. aureus by hemin.
An as yet unidentified violet pigment with an intense red-violet fluorescence under UV light ( λ = 366 nm) was found to be present in considerable amounts in cells of S. aureus ssp. anaerobius , whereas the supernatant medium of aerobically grown cells of the mutant MVF-SR contained an equally unidentified blue, non-fluorescing pigment.     

The distribution of microborings in molluscan shells from recent reef environments at Lee Stocking Island,Bahamas

Summary The distribution of microbial borings in bivalve shells was assessed between five research sites in windward and leeward environments at the Lee Stocking Island, Bahamas. The research sites are on windward coral reefs (sites B at 2 m, Fat 12 m, and C at 30 m), a tidal channel stromatolite reef (site A at 5 m), and a leeward hard ground reef (site D at 3 m). A total of 22 ichnotaxa have been recognized within 100 samples. Each site contained between 14 and 17 ichnotaxa. Although the diversity of microborings, expressed both as number of taxa and number of individuals per taxon, is similar between sites, the following ranking (in descending order) was found: B-F-A-C-D.Rhopalia catenata was found to dominate at site D, whileReticulina elegans dominated at site C, andFasciculus dactylus dominated at site F. The results are in accordance with the known bathymetric distribution of the boring microorganisms.