Value of heterogeneity of bacteria population created by the process of dissociation for the growth of purple photosynthetic bacteria in their natural habitat

For the first time, R- and M-dissociants were isolated from the population of purple phototrophic bacterium Rhodobacter capsulatus, and their growth under different luminance and aeration conditions was studied. Earlier, similar experiments were conducted with R- and M-dissociants of Rhodobacter sphaeroides. The physiological-biochemical differences of connatural bacterial species correlate with the distinctions of their inhabitation: Rhb.spheroides isolated from the soil is characterized by low speed of growth along with the ability to grow in dark and aerobiotic places demonstrated only by M-dissociant, which offers this species an advantage in adaptation for limited and heterogeneity space. Being extracted from the water, rapidly growing Rhb. capsulatus is better adapted for habitation at a free space.     

Requirements of Pseudomonas aeruginosaDissociants in Glucose, Nitrate, and Phosphate. Limiting Concentrations of the Nutrients during Batch Cultivation

Requirements of R-, S-, and M-dissociants of Pseudomonas aeruginosaK-2 strain in glucose, nitrate, and phosphate, as well as the error of determination, have been calculated from the data of 250 experiments on their batch cultivation on the media with the various initial content of these resources. The resource requirements of R- and S-dissociants appear indistinguishable within the error limits. The requirements of M-dissociant significantly differ from those of R- and S-forms; however, due to specific growth of the M-form, the confidence intervals of the measured values can overlap with those of R-space and S-forms. The obtained requirement values allow an evaluation of the studied resources concentration limiting the culture growth.     

Responses of tropical fruit bats to monoculture and polyculture farming in oil palm smallholdings

The oil palm industry is one of the main economic drivers in Southeast Asia. The industry has caused tropical deforestation on a massive scale in producing countries, and this forest conversion to oil palm agriculture has decimated the habitat of numerous native species. Monoculture and polyculture practices are two distinctive oil palm production systems. We hypothesize that polyculture farming hosts a greater diversity of species than monoculture farming. Habitat complexity in smallholdings is influenced by multiple farming practices (i.e. polyculture and monoculture). However, little is known about the effects of such farming practices in smallholdings on mammalian biodiversity, and particularly frugivorous bats. Our study aimed to find the best farming practice to reconcile oil palm production with biodiversity conservation. Mist-nets were used to trap frugivorous bats at 120 smallholdings in Peninsular Malaysia. We compared species richness and the abundance of frugivorous bats between monoculture and polyculture smallholdings. We investigated their relationships with vegetation structure characteristics. Our results revealed that species richness and abundance of frugivorous bats were significantly greater in polyculture smallholdings than monoculture smallholdings. We also found that 28.21% of the variation in species richness was explained by in situ habitat characteristics, including the number of dead standing oil palms and immature oil palms, non-grass cover, height of non-grass cover, and farming practices. The in situ habitat quality was closely associated with oil palm farming management. Commercial growers should implement polyculture rather than monoculture farming because polyculture farming has positive effects on the abundance and species richness of bats in oil palm production landscapes.     

Monoculture,polyculture, and polyvariety in tropical forest Swidden cultivation

A number of researchers have suggested that polyculture is characteristic of native tropical forest swiddens and have adduced theory from community ecology to account for its adaptiveness. Ye'kwana and Yanomamö swidden cultivation is examined, and it is shown that polyculture is not practiced to any significant degree. Instead, the concept of polyvariety is introduced along with a number of other cultivation practices that more simply account for the adaptiveness of Ye'kwana and Yanomamö gardening. In addition, comparative data from other parts of the tropical world indicate that polyculture is no more common than monoculture and recent advances in ecological research indicate that the diversity-stability hypothesis that underpins adaptive arguments of polyculture is in need of drastic revision.     

Monoculture of Leafcutter Ant Gardens

Background

Leafcutter ants depend on the cultivation of symbiotic Attamyces fungi for food, which are thought to be grown by the ants in single-strain, clonal monoculture throughout the hundreds to thousands of gardens within a leafcutter nest. Monoculture eliminates cultivar-cultivar competition that would select for competitive fungal traits that are detrimental to the ants, whereas polyculture of several fungi could increase nutritional diversity and disease resistance of genetically variable gardens.

Methodology/Principal Findings

Using three experimental approaches, we assessed cultivar diversity within nests of Atta leafcutter ants, which are most likely among all fungus-growing ants to cultivate distinct cultivar genotypes per nest because of the nests'' enormous sizes (up to 5000 gardens) and extended lifespans (10–20 years). In Atta texana and in A. cephalotes, we resampled nests over a 5-year period to test for persistence of resident cultivar genotypes within each nest, and we tested for genetic differences between fungi from different nest sectors accessed through excavation. In A. texana, we also determined the number of Attamyces cells carried as a starter inoculum by a dispersing queens (minimally several thousand Attamyces cells), and we tested for genetic differences between Attamyces carried by sister queens dispersing from the same nest. Except for mutational variation arising during clonal Attamyces propagation, DNA fingerprinting revealed no evidence for fungal polyculture and no genotype turnover during the 5-year surveys.

Conclusions/Significance

Atta leafcutter ants can achieve stable, fungal monoculture over many years. Mutational variation emerging within an Attamyces monoculture could provide genetic diversity for symbiont choice (gardening biases of the ants favoring specific mutational variants), an analog of artificial selection.     

对虾-罗非鱼-缢蛏封闭式综合养殖的水质研究

研究了对虾、罗非鱼和缢蛏封闭式综合养殖的环境状况.结果表明,混养各组环境状况总体要优于单养组.实验期间混养组DO的波动幅度略小于单养组,最低值则高于单养组;各混养组COD值和水层细菌数量相互差异不显著,但各混养组均显著低于单养组(t检验,α<0.05),混养围隔水体有机质含量明显低于单养;混养各围隔组中浮游生物生物量、Chl.a均低于单养组,滤食性动物对浮游生物的压制作用明显.在底泥中,混养组N、P的积累量比单养组低39.76%和51.26%,混养组细菌总数则比单养组低7.63%.本研究表明,封闭式综合养殖可以大大减少注入近海的养殖污水的排放量,从而降低对近海水质的污染.     

对虾—罗非鱼—缢蛏封闭式综合养殖的水质研究

研究了对虾,罗非鱼和缢蛏封闭式综合养殖的环境状况,结果表明,混养各组环境状态总体要优于单养组,实验期间混养组DO的波动幅度略小于单养组,最低值则高于单养组;各混养组COD值和水层细菌数量相互差异不显著,但各混养组均显著低于单养组（t-检验,α＜0．05）,混养围隔水体有机质含量明显低于单养;混养各围隔组中浮游生物生物量,Chl.a均低于且,滤食性动物对浮游生物的压制作用明显,在底泥中,混养组N,P的积累量比单养组低39．76％和51．26％,混养组细胞总数则比单养组低7．63％,本研究表明,封闭式综合养殖可以大大减少注入近海的养殖污水的排放量,从而降低对近海水质的污染。     

Plant Species Composition Alters the Sign and Strength of an Emergent Multi-Predator Effect by Modifying Predator Foraging Behaviour

The prediction of pest-control functioning by multi-predator communities is hindered by the non-additive nature of species functioning. Such non-additivity, commonly termed an emergent multi-predator effect, is known to be affected by elements of the ecological context, such as the structure and composition of vegetation, in addition to the traits of the predators themselves. Here we report mesocosm experiments designed to test the influence of plant density and species composition (wheat monoculture or wheat and faba bean polyculture) on the emergence of multi-predator effects between Adalia bipunctata and Chrysoperla carnea, in their suppression of populations of the aphid Metopolophium dirhodum. The mesocosm experiments were followed by a series of behavioural observations designed to identify how interactions among predators are modified by plant species composition and whether these effects are consistent with the observed influence of plant species composition on aphid population suppression. Although plant density was shown to have no influence on the multi-predator effect on aphid population growth, plant composition had a marked effect. In wheat monoculture, Adalia and Chrysoperla mixed treatments caused greater suppression of M. dirhodum populations than expected. However this positive emergent effect was reversed to a negative multi-predator effect in wheat and faba bean polyculture. The behavioural observations revealed that although dominant individuals did not respond to the presence of faba bean plants, the behaviour of sub-dominants was affected markedly, consistent with their foraging for extra-floral nectar produced by the faba bean. This interaction between plant composition and predator community composition on the foraging behaviour of sub-dominants is thought to underlie the observed effect of plant composition on the multi-predator effect. Thus, the emergence of multi-predator effects is shown to be strongly influenced by plant species composition, mediated, in this case, by the provision of extra-floral nectar by one of the plant species.     

Effects of polyculture and monoculture farming in oil palm smallholdings on tropical fruit‐feeding butterfly diversity

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Growth peculiarities of hydrocarbon-oxidizing rhodococcus and pseudomonads dissociates in mono- and mixed cultures

Growth of R-, S-, and M-dissociates of Rhodococcus rubropertinctus in mixed culture with R-, S-, and M-dissociates of Rhodococcus aeruginosa in comparison with rhodococcus monoculture cultivated on mineral nutrient medium with hexadecane has been studied. The amount of cells in the stationary growth phase has increased 10–15 times in comparison with the monoculture, and pseudomonads which dominated in population, in associations of M-dissociate of R. rubropertinctus with any dissociate of R. aeruginosa or two S-dissociates in the studied bacterial species. The emulsifying ability of the cells (maximal in R-dissociates), the synthesis of surface active compounds in pseudomonads, which is maximal in M-dissociate had the main influence on the growth of rhodococci on the nutrient medium with hydrocarbons.     

Identification of Cyanophage Ma-LBP and Infection of the Cyanobacterium Microcystis aeruginosa from an Australian Subtropical Lake by the Virus

Viruses can control the structure of bacterial communities in aquatic environments. The aim of this project was to determine if cyanophages (viruses specific to cyanobacteria) could exert a controlling influence on the abundance of the potentially toxic cyanobacterium Microcystis aeruginosa (host). M. aeruginosa was isolated, cultured, and characterized from a subtropical monomictic lake—Lake Baroon, Sunshine Coast, Queensland, Australia. The viral communities in the lake were separated from cyanobacterial grazers by filtration and chloroform washing. The natural lake viral cocktail was incubated with the M. aeruginosa host growing under optimal light and nutrient conditions. The specific growth rate of the host was 0.023 h⁻¹; generation time, 30.2 h. Within 6 days, the host abundance decreased by 95%. The density of the cyanophage was positively correlated with the rate of M. aeruginosa cell lysis (r² = 0.95). The cyanophage replication time was 11.2 h, with an average burst size of 28 viral particles per host cell. However, in 3 weeks, the cultured host community recovered, possibly because the host developed resistance (immunity) to the cyanophage. The multiplicity of infection was determined to be 2,890 virus-like particles/cultured host cell, using an undiluted lake viral population. Transmission electron microscopy showed that two types of virus were likely controlling the host cyanobacterial abundance. Both viruses displayed T7-like morphology and belonged to the Podoviridiae group (short tails) of viruses that we called cyanophage Ma-LBP. In Lake Baroon, the number of the cyanophage Ma-LBP was 5.6 × 10⁴ cyanophage·ml⁻¹, representing 0.23% of the natural viral population of 2.46 × 10⁷·ml⁻¹. Our results showed that this cyanophage could be a major natural control mechanism of M. aeruginosa abundance in aquatic ecosystems like Lake Baroon. Future studies of potentially toxic cyanobacterial blooms need to consider factors that influence cyanophage attachment, infectivity, and lysis of their host alongside the physical and chemical parameters that drive cyanobacterial growth and production.     

Nutrient use preferences among soil Streptomyces suggest greater resource competition in monoculture than polyculture plant communities

Background an aims

Nutrient use overlap among sympatric Streptomyces populations is correlated with pathogen inhibitory capacity, yet there is little information on either the factors that influence nutrient use overlap among coexisting populations or the diversity of nutrient use among soil Streptomyces.

Methods

We examined the effects of plant host and plant species richness on nutrient use of Streptomyces isolated from the rhizosphere of Andropogon gerardii (Ag) and Lespedeza capitata (Lc) growing in communities of 1 (monoculture) or 16 (polyculture) plant species. Growth on 95 carbon sources was assessed over 5d.

Results

Cumulative growth was significantly greater for polyculture vs. monoculture isolates, and for Lc vs. Ag isolates. Isolates from monocultures, but not polycultures, exhibited a drop in growth rates between 24 h and 72 h post-inoculation, suggesting resource allocation to non-growth functions. Isolates from high-carbon (polyculture) or high-nitrogen (Lc) soils had larger niche widths than isolates from low-C (monocultures) or low-N (Ag) soils. Sympatric isolates from polycultures were significantly more differentiated from one another in preferred nutrients for growth than sympatric isolates from monocultures.

Conclusions

These results suggest that Streptomyces populations respond to selection imposed by plant host and plant community richness and that populations from polyculture but not from monoculture, mediate resource competition via niche differentiation.

     

The impact of weed diversity on insect population dynamics and crop yield in collards, Brassica oleraceae (Brassicaceae)

Vegetational diversity within agricultural fields is often suggested as a means to reduce insect herbivore populations and to increase their natural enemies. In this paper we compare population densities of herbivores, predators, and parasitoids on collards in monocultures and on collards interplanted with two different groups of weeds, one with weed species from the same plant family as the collards (Brassicaceae) and one with weed species from unrelated plant families (non-Brassicaceae). The collards in the Brassicaceae weed polyculture had higher densities (number of herbivores/mean leaf area (cm²) per plant) of specialist herbivores than collards in the non-Brassicaceae weed polyculture and in collard monoculture. The “resource concentration” hypothesis is supported by the observation of higher populations of Phyllotreta spp., acting as facultative polyphages, in the Brassicaceae weed polyculture than in the non-Brassicaceae weed polyculture where Phyllotreta spp. are facultative monophages. Population densities of natural enemies (mostly coccinellids, carabids, and staphylinids) were higher in the polycultures than in the monoculture: carabid and staphylinid predators may be responsible for larval mortality in the imported cabbage worm, Pieris␣rapae, and in the diamondback larvae, Plutella xylostella. In spite of differences in densities of specialist herbivores across treatments, crop yield, leaf area (cm²), the proportion of leaf area damaged, and the number of leaves undamaged did not differ. These findings suggest that plant competition may interfere with attempts to reduce herbivore damage. We conclude that the use of weedy cultures can provide effective means of reducing herbivores if the crop and weed species are not related and plant competition is prevented. Received: 25 December 1995 / Accepted: 24 February 1997     

The distance between bacterial species in sequence space

Despite the revolution caused by information from macromolecular sequences, the basis of bacterial classification remains the genus and the species. How do these terms relate to the variety of bacteria that exist on earth? In this paper, the inter- and intraspecies differences in amino acid sequence of several bacterial electron transport proteins, cytochromesc, and blue copper proteins are compared. For the soil and water organisms studied, bacterial species can be classed as “tight” when there is little intraspecies variation, or “loose” when this variation is large. For this set of proteins and organisms, interspecies variation is much larger than that within a species. Examples of “tight” species arePseudomonas aeruginosa andRhodobacter sphaeroides, whilePseudomonas stutzeri andRhodopseudomonas palustris are loose species. The results are discussed in the context of the origin and age of bacterial species, and the distribution of genomes in “sequence space.” The situation is probably different for commensal or pathogenic bacteria, whose population structure and evolution are linked to the properties of another organism.     

Does a multi‐plant diet benefit a polyphagous herbivore? A case study with Bemisia tabaci

Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) is a highly polyphagous herbivore. This research was conducted to compare the development of B. tabaci reared in a multi‐plant treatment (polyculture) with those in single‐plant treatments (monocultures). Adult B. tabaci females fed on a mixture of tomato, cabbage, cotton, cucumber, and kidney bean survived longer and laid more eggs than those fed exclusively on one of these plant species. Egg numbers per plant laid in the polyculture treatment were positively correlated with those laid on the same plant species in the monoculture treatments, and egg numbers per plant laid on tomato, cotton, and cucumber in the polyculture were significantly higher than those laid on the same plants in the monocultures. Concentrations of total protein and trehalose in B. tabaci were not significantly different after 7 days of feeding in the respective treatments, but activities of superoxide dismutases (SOD) and alkaline phosphatase (AKP) of B. tabaci in polyculture were lower than those in monoculture. Conversely, activities of trehalase, sucrase, and amylase in B. tabaci kept in polyculture were higher than those of insects from the monoculture. In each of the monoculture treatments, there was a negative correlation between AKP in B. tabaci and oviposition, and also between AKP and amylase. SOD and sucrase activities in B. tabaci were positively correlated with polyphenol oxidase (PPO) and peroxidase (POD) activities in plants. In the plants damaged by whiteflies in the polyculture treatment, activities of SOD in cucumber, PPO in cotton and kidney bean, and POD in tomato and cucumber were lower than those in the monoculture treatments, whereas SOD in cabbage and catalase (CAT) in tomato in the polyculture treatment were higher than those in the monoculture treatments.     

The influence of soil and water physicochemical properties on the distribution of Nostoc sphaeroides (Cyanophyceae) in paddy fields and biochemical comparison with indoor cultured biomass

A survey on the distribution of Nostoc sphaeroides, an edible cyanobacterium, growing in mountain paddy fields of Zouma Town in China was carried out in May 2012. The physical and chemical properties of paddy field soil and water were analyzed. We found that in a paddy field in which N. sphaeroides historically did not grow when the water was acidic (pH 6.30) and showed the lowest conductivity, and the soil contained the lowest content of total phosphorus (TP) and available phosphorus (AP) compared to other fields where N. sphaeroides did grow. The nitrogen (N) contents in both water and soil samples were sufficient compared with the high N. sphaeroides yield paddy fields. These results suggest that an acidic water environment, as well as low TP and especially low AP, was the main limiting factors for the distribution of N. sphaeroides. In addition, comparison of the biochemical composition of field-harvested, short-term-cultivated, and long-term-cultivated N. sphaeroides showed that the contents of photosynthetic pigments (chlorophyll a and carotenoids) and soluble protein including phycobiliproteins increased gradually from wild habitat to long-term indoor cultivation N. sphaeroides, while both total and soluble carbohydrates showed a decreasing trend during indoor cultivation.     

Batch kinetic studies on growth of salt tolerant Pseudomonas aeruginosa secreting protease in a biocalorimeter

Biocalorimetry has proved to be an efficient tool for studying the energetics involved in several biochemical reactions. In this study, biocalorimetry was employed to simultaneously analyze biokinetics and bioenergetics involved during cultivation of a salt tolerant Pseudomonas aeruginosa for the production of alkaline protease. Batch experiments were performed in a bench scale biocalorimeter for alkaline protease production by P. aeruginosa using optimized process conditions. Tessier’s double substrate growth model was found to provide a good fit for the growth of P. aeruginosa in the biocalorimeter, and the biokinetic parameters were estimated. The heat flow profile resulting from metabolic activity of P. aeruginosa was shown to accurately depict both the kinetics of cell growth and protease production. Biokinetic and bioenergetic analysis on the growth of P. aeruginosa revealed that peptone is preferentially used as the substrate for its intracellular activities and glycerol acts as an energy source for its growth metabolism.     

TatC-dependent translocation of pyoverdine is responsible for the microbial growth suppression

Infections are often not caused by a colonization of Pseudomonas aeruginosa alone but by a consortium of other bacteria. Little is known about the impact of P. aeruginosa on the growth of other bacteria upon coinfection. Here, cellree culture supernatants obtained from P. aeruginosa suppressed the growth of a number of bacterial strains such as Corynebacterium glutamicum, Bacillus subtilis, Staphylococcus aureus, and Agrobacterium tumefaciens, but had little effect on the growth of Escherichia coli and Salmonella Typhimurium. The growth suppression effect was obvious when P. aeruginosa was cultivated in M9 minimal media, and the suppression was not due to pyocyanin, a well-known antimicrobial toxin secreted by P. aeruginosa. By performing transposon mutagenesis, PA5070 encoding TatC was identified, and the culture supernatant of its mutant did not suppress the growth. HPLC analysis of supernatants showed that pyoverdine was a secondary metabolite present in culture supernatants of the wild-type strain, but not in those of the PA5070 mutant. Supplementation of FeCl₂ as a source of iron compromised the growth suppression effect of supernatants and also recovered biofilm formation of S. aureus, indicating that pyoverdine-mediated iron acquisition is responsible for the growth suppression. Thus, this study provides the action of TatC-dependent pyoverdine translocation for the growth suppression of other bacteria, and it might aid understanding of the impact of P. aeruginosa in the complex community of bacterial species upon coinfection.     

Combined effects of four Microcystis aeruginosa strains and Scenedesmus obliquus concentrations on population dynamics and resting egg formation of two Daphnia species

We examined the hypothesis that toxic effects of Microcystis aeruginosa to population dynamics, ephippial production, and resting egg formation of Daphnia were restricted by food quality levels. Four unicellular, toxic M. aeruginosa strains with contrasting concentration of microcystin and two Daphnia species were used in this study. The number of offspring at first reproduction, population densities, and maximum population growth rate of two Daphnia species were lower at the highest toxic M. aeruginosa 7820 treatment compared with other treatments under two concentrations of Scenedesmus obliquus. The maximum number of offspring at first reproduction of two Daphnia species appeared in the higher toxic M. aeruginosa 526 strain at the high concentration of S. obliquus. The effects of M. aeruginosa strains, S. obliquus, and their combination on the number of offspring at first reproduction and the maximum population growth rate of two Daphnia species were significant (P < 0.001). Two Daphnia species could not reproduce in the highest toxic M7820 treatment under two concentrations of S. obliquus. They had lower population size and maximum population growth rate in the higher toxic M526 treatment at the low concentration of S. obliquus, but they were higher at the high concentration of S. obliquus. This result suggests that high S. obliquus concentration could relieve the toxicity of M. aeruginosa to Daphnia, and Daphnia could utilize the lower toxic Microcystis as food. The cumulative ephippia numbers of two Daphnia species were more at the high concentration of S. obliquus than those at the low concentration. The percentage of ephippia containing no resting eggs of two Daphnia species was evidently higher at the low concentration of S. obliquus but was lower at the high concentration of S. obliquus. Our results indicated that the cumulative ephippia numbers of Daphnia were population density dependent at the high-level food, and the productions of ephippia in Daphnia were significantly controlled by microcystin concentration at the low-level food.     

The effect of Quorum sensing inhibitors on the evolution of CRISPR-based phage immunity in Pseudomonas aeruginosa

Quorum sensing controls the expression of a wide range of important traits in the opportunistic pathogen Pseudomonas aeruginosa, including the expression of virulence genes and its CRISPR-cas immune system, which protects from bacteriophage (phage) infection. This finding has led to the speculation that synthetic quorum sensing inhibitors could be used to limit the evolution of CRISPR immunity during phage therapy. Here we use experimental evolution to explore if and how a quorum sensing inhibitor influences the population and evolutionary dynamics of P. aeruginosa upon phage DMS3vir infection. We find that chemical inhibition of quorum sensing decreases phage adsorption rates due to downregulation of the Type IV pilus, which causes delayed lysis of bacterial cultures and favours the evolution of CRISPR immunity. Our data therefore suggest that inhibiting quorum sensing may reduce rather than improve the therapeutic efficacy of pilus-specific phage, and this is likely a general feature when phage receptors are positively regulated by quorum sensing.Subject terms: Microbiology, Antimicrobials