Modern marine stromatolites in the Exuma Cays,Bahamas: Uncommonly common

Summary Modern stromatolites in open marine environments, unknown until recently, are common throughout the Exuma Cays, Bahamas. They occur in three distinct settings: subtidal tidal passes, subtidal sandy embayments and intertidal beaches. These stromatolites have a relief of up to 2.5 m and occur in water depths ranging from intertidal to 10 m. Surfaces near the sediment-water interface are typically colonized by cyanobacterial mats, whereas high relief surfaces are commonly colonized by algal turf and other macroalgae such asBatophora, Acetabularia, andSargassum. The internal structure of the stromatolites is characterized by millimeter-scale lamination defined by differential lithification of agglutinated sediment. In thin section, the lithified laminae appear as micritic horizons with distinct microstructures: they consist of thin micritic crusts (20–40 μm thick) overlying layers of micritized sediment grains (200–1000 μm thick); the micritized grains are cemented at point-contacts and are trucated along a surface of intense microboring. The Exuma stromatolites are built by cyanobacterial-dominated communities. These laminated prokaryotic structures grade to unlayered thrombolites built by eukaryotic algae. The variety of sites, settings and shapes of stromatolites in the Exuma Cays present excellent opportunities for future studies of stromatolite morphogenesis.     

Shark Bay stromatolites: Microfabrics and reinterpretation of origins

Summary Detailed analysis of microfabrics in Hamelin Pool stromatolites leads to reinterpretation of the origins of these structures. Previous studies have concluded that Shark Bay stromatolites form primarily as a result of sediment trapping and binding by microorganisms. Our results suggest that microbial precipitation of microcrystalline carbonate (micrite), as both framework and cement in these stromatolites, is also a fundamental, heretofore unrecognized, process in their formation. Microbial trapping and binding is the primary mechanism of stromatolite accretion in the intertidal zone, forming grainy, calcarenite structures. Microbial precipitation is the primary accretionary mechanism in the subtidal zone, forming muddy, micritic stromatolites. Microbial precipitation also lithifies trapped and bound sediment in the calcarenite stromatolites. Recognition of microbially precipitated micrite in Shark Bay stromatolites is important, as many ancient stromatolites are micritic.     

Stratigraphic analysis of a fossil Neogoniolithon-capped patch reef and associated facies,San Salvador,Bahamas

An unusual Pleistocene patch reef is exposed in a coastal cliff at Grotto Beach, San Salvador, Bahamas. The reef is a coralline framestone constructed mainly by Porites astreoides together with a few large heads of Diploria strigosa and Montastrea annularis, and is capped by a dense thicket of Neogoniolithon strictum that is interpreted as marking the subtidal/intertidal boundary. The reef is flanked to the northeast by laminated to low-angle cross-laminated intraclastic grainstones and to the southwest by skeletal rudstone of reefal and interreefal derivation. Uranium-series dating of pure aragonite from a Diploria corallum yielded an age of 123 000±9000 years. Reef growth began on an erosional surface underlain by steeply crossbedded eolian grainstone. As the reef grew upward, it also grew laterally over adjacent penecontemporaneous subtidal sediments. The reef was eventually buried by 2.3 m of shallow subtidal and beach sediments that apparently prograded seaward during a highstand, or possibly while sea level was still rising. The shallow subtidal sediments are mainly peloidal, ooidal and skeletal grainstones that are pervasively bioturbated. The overlying beach facies comprises predominantly laminated, sparsely burrowed grainstone. The beach and shallow subtidal facies contain boulders of fine-grained laminated grainstone that are interpreted as storm-tossed blocks of beachrock. Living analogs of the Grotto Beach fossil reef lie off East Beach, San Salvador. Several of these have a flourishing cap of Neogoniolithon that extends above low-tide level and we believe that the Neogoniolithon cap of Grotto Beach reef did likewise. Wherever found in the stratigraphic record this facies should serve to identify the subtidal/intertidal boundary. The uppermost Pleistocene beach sediments associated with Grotto Beach fossil reef lie 5.8 m above present-day mean sea level, which ist strong evidence that this portion of San Salvador has undergone little subsidence since the Grotto Beach section was deposited.     

Stromatolite biostromes and associated facies in the late precambrian porsanger dolomite formation of Finnmark,Arctic Norway

The Late Precambrian Porsanger Dolomite Formation, occurring beneath the Varanger tillite in Arctic Norway, consists of various dolomitic lithofacies of subtidal, intertidal and supratidal environments. The lithofacies belong to three facies associations, A, B and C, which are repeated several times in the sequence. Facies association A comprises cryptalgal laminites, dolomicrites and thin-bedded grainstones and flakestones. The environment represented by this facies is broadly intertidal (locally supratidal) flat, with the interbedded carbonate sands representing storm deposits. Facies association B, of shallow subtidal to low intertidal origin, comprises cross-bedded carbonate sands (flakestones, grainstones and oolites) forming units up to 10 m thick. Small stromatolite bioherms (5 m wide, 2 m high) are locally developed within these “high-energy” deposits. Facies association C formed in a subtidal environment consists of laterally extensive (over 20 km) uniformly developed stromatolite biostromes, up to 16 m thick. The biostromes, locally divided by channels filled with grainstones and intraformational conglomerates, are composed of cylindrical and turbinate columnar (SH-V and SH-C) and digitate stromatolites (Gymnosolen, Inseria and Tungussia) in their lower parts. Larger, bulbous (SH-C and LLH-C) and conical (Conophyton) stromatolites occur in the upper parts, as well as the branching conophyte, Jacutophyton.All of the biostromes are always developed above cross-bedded carbonate sands (facies association B). A broadly symmetrical cyclic pattern, A B C B A, of tidal flat deposits (facies association A) passing up into carbonate sands (B), into biostrome (C), overlain by carbonate sands (B) and then tidal flat deposits (A), is repeated four times in the Porsanger Dolomite sequence. The pattern is interpreted in terms of two controls on sedimentation: (1) a slow transgressive phase followed by (2) depositional regression. The former (1) took place either through eustatic sea-level rise or more likely through accelerated subsidence because of tectonic instability and compaction of underlying sediments. This resulted in the sequence: tidal flat sediments, low intertidal/shallow subtidal carbonate sands, subtidal biostrome (A, B, C). Depositional regression through prograding tidal flats, generated the shoaling upward part of the cycle: biostrome, carbonate sands, tidal flat sediments (C, B, A).     

Biotic and Abiotic Imprints on Mg-Rich Stromatolites: Lessons from Lake Salda,SW Turkey

Abstract

Modern hydrated Mg rich stromatolites are actively growing along the shallow shorelines of Lake Salda (SW Turkey). An integrated approach involving isotopic, mineralogical, microscopic, and organic/geochemical techniques along with culture-independent molecular methods were applied to various lake samples to assess the role of microbial processes on stromatolite formation. This study further explores the biosignature preservation potential of fossil stromatolites by comparing with textures, lipid profiles and isotopic composition of the modern stromatolites. Similar lipid profile and δ¹³C isotope values in active and fossil stromatolites argue that CO₂ cycling delicately balanced between photosynthetic and heterotrophic (aerobic) activity as in the active ones may have regulated stromatolite formation in the lake. A decrease in the exopolymeric substances (EPS) profile of the mat and concurrent hydromagnesite precipitation imply a critical role for EPS in the formation of stromatolite. Consistently, a discrete, discontinuous lamination and clotted micropeloidal textures with cyanobacterial remnants in the fossil stromatolites likely refer to partial degradation of EPS, creating local nucleation sites and allowing precipitation of hydrated Mg minerals and provide a link to the active microbial mat in the modern stromatolites. Our results for the first time provide strong evidence for close coupling of cyanobacterial photosynthesis and aerobic heterotrophic respiration on hydromagnesite textures involved in the stromatolite formation of Lake Salda. The creation of photosynthesis induced high-pH conditions combined with a change in the amount and properties of the EPS and the repetition of these processes over time seems to be a possible pathway for stromatolite growth in the lake. Understanding these microbial symbioses and their mineralized records may provide new insights on the formation mechanism of Mg-rich carbonates not only for terrestrial geological records but also for planetary bodies like Mars, where hydrated Mg-carbonate deposits have been identified in possible paleolake deposits at Jezero crater, the landing site of the NASA Mars 2020 rover.     

Lithostratigraphic analysis of a new stromatolite–thrombolite reef from across the rise of atmospheric oxygen in the Paleoproterozoic Turee Creek Group,Western Australia

This study describes a previously undocumented dolomitic stromatolite–thrombolite reef complex deposited within the upper part (Kazput Formation) of the c. 2.4–2.3 Ga Turee Creek Group, Western Australia, across the rise of atmospheric oxygen. Confused by some as representing a faulted slice of the younger c. 1.8 Ga Duck Creek Dolomite, this study describes the setting and lithostratigraphy of the 350‐m‐thick complex and shows how it differs from its near neighbour. The Kazput reef complex is preserved along 15 km of continuous exposure on the east limb of a faulted, north‐west‐plunging syncline and consists of 5 recognisable facies associations (A–E), which form two part regressions and one transgression. The oldest facies association (A) is characterised by thinly bedded dololutite–dolarenite, with local domical stromatolites. Association B consists of interbedded columnar and stratiform stromatolites deposited under relatively shallow‐water conditions. Association C comprises tightly packed columnar and club‐shaped stromatolites deposited under continuously deepening conditions. Clotted (thrombolite‐like) microbialite, in units up to 40 m thick, dominates Association D, whereas Association E contains bedded dololutite and dolarenite, and some thinly bedded ironstone, shale and black chert units. Carbon and oxygen isotope stratigraphy reveals a narrow range in both δ¹³C_carb values, from ?0.22 to 0.97‰ (VPDB: average = 0.68‰), and δ¹⁸O values, from ?14.8 to ?10.3‰ (VPDB), within the range of elevated fluid temperatures, likely reflecting some isotopic exchange. The Kazput Formation stromatolite–thrombolite reef complex contains features of younger Paleoproterozoic carbonate reefs, yet is 300–500 Ma older than previously described Proterozoic examples worldwide. Significantly, the microbial fabrics are clearly distinct from Archean stromatolitic marine carbonate reefs by way of containing the first appearance of clotted microbialite and large columnar stromatolites with complex branching arrangements. Such structures denote a more complex morphological expression of growth than previously recorded in the geological record and may link to the rise of atmospheric oxygen.     

Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas

Living marine stromatolites at Highborne Cay, Bahamas, are formed by microbial mat communities that facilitate precipitation of calcium carbonate and bind and trap small carbonate sand grains. This process results in a laminated structure similar to the layering observed in ancient stromatolites. In the modern marine system at Highborne Cay, lamination, lithification and stromatolite formation are associated with cycling between three types of microbial communities at the stromatolite surface (Types 1, 2 and 3, which range from a leathery microbial mat to microbially fused sediment). Examination of 923 universal small-subunit rRNA gene sequences from these communities reveals that taxonomic richness increases during transition from Type 1 to Type 3 communities, supporting a previous model that proposed that the three communities represent different stages of mat development. The phylogenetic composition also changes significantly between these community types and these community changes occur in concert with variation in biogeochemical rates. The dominant bacterial groups detected in the stromatolites include Alphaproteobacteria , Planctomycetes , Cyanobacteria and Bacteroidetes . In addition, the stromatolite communities were found to contain novel cyanobacteria that may be uniquely associated with modern marine stromatolites. The implications of these findings are discussed in the context of current models for stromatolite formation.     

Geological and trace element evidence for a marine sedimentary environment of deposition and biogenicity of 3.45 Ga stromatolitic carbonates in the Pilbara Craton, and support for a reducing Archaean ocean

Bedded carbonate rocks from the 3.45 Ga Warrawoona Group, Pilbara Craton, contain structures that have been regarded either as the oldest known stromatolites or as abiotic hydrothermal deposits. We present new field and petrological observations and high‐precision REE + Y data from the carbonates in order to test the origin of the deposits. Trace element geochemistry from a number of laminated stromatolitic dolomite samples of the c. 3.40 Ga Strelley Pool Chert conclusively shows that they precipitated from anoxic seawater, probably in a very shallow environment consistent with previous sedimentological observations. Edge‐wise conglomerates in troughs between stromatolites and widespread cross‐stratification provide additional evidence of stromatolite construction, at least partly, from layers of particulate sediment, rather than solely from rigid crusts. Accumulation of particulate sediment on steep stromatolite sides in a high‐energy environment suggests organic binding of the surface. Relative and absolute REE + Y contents are exactly comparable with Late Archaean microbial carbonates of widely agreed biological origin. Ankerite from a unit of bedded ankerite–chert couplets from near the top of the stratigraphically older (3.49 Ga) Dresser Formation, which immediately underlies wrinkly stromatolites with small, broad, low‐amplitude domes, also precipitated from anoxic seawater. The REE + Y data of carbonates from the Strelley Pool Chert and Dresser Formation contrast strongly with those from siderite layers in a jasper–siderite–Fe‐chlorite banded iron‐formation from the base of the Panorama Formation (3.45 Ga), which is clearly hydrothermal in origin. The geochemical results, together with sedimentological data, strongly support: (1) deposition of Dresser Formation and Strelley Pool Chert carbonates from Archaean seawater, in part as particulate carbonate sediment; (2) biogenicity of the stromatolitic carbonates; (3) a reducing Archaean atmosphere; (4) ongoing extensive terrestrial erosion prior to ～3.45 Ga.     

Palaeoecological significance of calcimicrobial communities during ramp evolution: An example from the Lower Cambrian of Germany

Summary The palaeoecology of calcimicrobial communities from the only Gondwana-related Lower Cambrian in Central Europe (eastern Germany, carbonates and siliciclastics) has been studied. Six morphological groups of calcimicrobes are described. Some of them show a significant ability for sediment stabilization and construction of biohermal reef mounds. Other types of calcimicrobes were more common in biostromal thickets. Some of them were capable of populating different environments, growing in different modes and on different substrates. AnEpiphyton-archaeocyathan reef mound is described, illustrating the importance of calcimicrobes for mound formation. The fossil communities together with a complex of sedimentary features allow a reconstruction of the depositional history of the environment. Based on comparison with similar Gondwanan Lower Cambrian successions (Sardinia/Italy, Spain) and facies development a model is proposed describing the sedimentary history. Three depositional stages are distinguished: (1) deep subtidal ramp, (2) shallow subtidal ramp, (3) shallow subtidal to intertidal mixed siliciclastic-carbonate ramp with migrating oolitic shoals. In spite of similarities with the deposits in southern Europe, some distinct differences exist with respect to the succession of facies, the completeness of the sections, the fossil spectrum, and the nature of the siliciclastic sediments. For the German Lower Cambrian, a facies development from a low energy deep environment to a high energy shallow environment (partly restricted and with some evaporites) can be reconstructed. As compared with Sardinia and Spain, the depositional environment of the eastern German Lower Cambrian successions was predominantly characterized by low-energy conditions.     

Stromatolite-dominated microbialites at the Permian–Triassic boundary of the Xikou section on South Qinling Block,China

Permian–Triassic boundary microbialites (PTBMs) are organosedimentary carbonates formed immediately after the end-Permian mass extinction. All those reported PTBMs constrained by convincing conodont biozones are present stratigraphycally not higher than the Hindeodus parvus zone and most of them are dominated by thrombolites. This paper provides the first record of a brief, but spectacular development of stromatolite-dominated PTBMs within the basal Isarcicella isarcica conodont zone of the earliest Triassic from the Xikou section of South Qinling Block that was at the margin of the North China Block during the Permian–Triassic transition and was geographically separated from the major occurrence of post-extinction microbialites in the South China Block. This stromatolite cap overlies a 3.7-m-thick oolitic limestone and is composed of a lower 0.2-m-thick bed and an upper 0.5-m-thick bed, separated by a 0.2-m-thick greyish green siliciclastic mudstone. These two stromatolite beds mainly consist of columnar stromatolites with subordinate domal stromatolites. The intercolumn and interstitial spaces within the stromatolites are filled with oolitic grainstones. At the microscopic scale, laminoid structures in stromatolites comprise wavy, millimetric-domical and tangled laminae. The increased grain and fossil contents and/or bioturbation in the domical and tangled laminae indicate that the formation of these laminae is likely related to an increase in the populations and the disruptions by benthic metazoans, as well as an influx of sediment grains. The δ¹³C_carb values fluctuate between 2‰ and 3‰ in the uppermost Permian strata; a distinct negative shift of 1.9‰ occurs at the topmost oolitic grainstone, just below the lower stromatolite bed, and the lowest value of −0.1‰ is located at the base of the upper stromatolite bed. The stratigraphic succession from stromatolites to thrombolites of the PTBMs may represent a transgressive succession and/or a transient ecosystem recovery immediately after the end-Permian mass extinction. The thrombolites-dominated PTBMs mainly developed in near-equator shallow marine geographic locations, and stromatolite-dominated PTBMs mainly developed at higher latitude settings, which probably indicates that a relatively lower diversity and abundance of marine benthic metazoans existed at higher latitudes after the end-Permian mass extinction.     

THE ROLE OF DIATOMS IN STROMATOLITE GROWTH: TWO EXAMPLES FROM MODERN FRESHWATER SETTINGS1

Some modern laminated and calcified stromatolitic structures are partially or completely formed by eukaryotes. Diatom populations in freshwater environments with elevated ionic concentrations contribute to calcite precipitation, and the formation of distinctive mineral-rich stromatolitic laminae. Two types of stromatolite-forming diatom populations were observed. In the first example, in stromatolies growing on a quarry ledge near Laegerdorf, North Germany, calcite crystals with biogenic imprints form around polysaccharide stalks of the diatom Gomphonema olivaceum var. calcarea (Cleve) Cleve-Euler. These individually precipitated crystals eventunally become cemented together in layers, forming rigid, laminated stromatolitic deposits which drape over the quarry ledge. In the second example, in stromatolites forming in a shallow stream near Cuatro Ciénegas, Coahuila, Mexico, diatomaceous laminae also form by the accumulation of carbonate particles in a matrix of diatoms and their extracellular polysaccharide products. These laminae become thick enough to drape over individual stromatolite heads. The diatoms responsible for these deposits are Amphora aff. A. Katii Selva, Nitzschia denticula Grun., and six other species. At Cuatro Ciénegas, in addition to the diatomaceous laminae, carbonate-rich cyanobacterial layers, dominated by two cyanobacterial species with different fabrics and porosities, are also present and contribute substantially to the growth of the stromatolites. In both the Laegerdorf and Cuatro Ciénegas examples, entire stromatolites or thick laminations on stromatolites are built by a small number of diatom species which produce copious amounts of extracellular stalk, gel, and sheath material, a property they share with cyanobacterial stromatolite builders.     

Composition and Structure of Microbial Communities from Stromatolites of Hamelin Pool in Shark Bay, Western Australia

Stromatolites, organosedimentary structures formed by microbial activity, are found throughout the geological record and are important markers of biological history. More conspicuous in the past, stromatolites occur today in a few shallow marine environments, including Hamelin Pool in Shark Bay, Western Australia. Hamelin Pool stromatolites often have been considered contemporary analogs to ancient stromatolites, yet little is known about the microbial communities that build them. We used DNA-based molecular phylogenetic methods that do not require cultivation to study the microbial diversity of an irregular stromatolite and of the surface and interior of a domal stromatolite. To identify the constituents of the stromatolite communities, small subunit rRNA genes were amplified by PCR from community genomic DNA with universal primers, cloned, sequenced, and compared to known rRNA genes. The communities were highly diverse and novel. The average sequence identity of Hamelin Pool sequences compared to the >200,000 known rRNA sequences was only ~92%. Clone libraries were ~90% bacterial and ~10% archaeal, and eucaryotic rRNA genes were not detected in the libraries. The most abundant sequences were representative of novel proteobacteria (~28%), planctomycetes (~17%), and actinobacteria (~14%). Sequences representative of cyanobacteria, long considered to dominate these communities, comprised <5% of clones. Approximately 10% of the sequences were most closely related to those of α-proteobacterial anoxygenic phototrophs. These results provide a framework for understanding the kinds of organisms that build contemporary stromatolites, their ecology, and their relevance to stromatolites preserved in the geological record.     

THE ROLE OF DIATOMS IN STROMATOLITE GROWTH: TWO EXAMPLES FORM MODERN FRESHWATER SETTINGS1

Some modern laminated find calcified stromatolitic structures are partially or completely formed by eukaryotes. Diatom populations in freshwater environments with elevated ionic concentrations contribute to calcite precipitation, and the formation of distinctive mineral-rich stromatolitic laminae. Two types of stromatolite-forming diatom populations were observed. In the first example, in stromatolites growing on a quarry ledge near Laegerdorf, North Germany, calcite crystals with biogenic imprints form around polysaccharide stalks of the diatom Gomphonema olivaceum var. calcarea (Cleve) Cleve-Euler. These individually precipitated crystals eventually become cemented together in layers, forming rigid, laminated stromatolitic deposits which drape over the quarry ledge. In the second example, in stromatolites forming in a shallow stream near Cuatro Ciénegas, Coahuila, Mexico, diatomaceous laminae also form by the accumulation of carbonate particles in a matrix of diatoms and their extracellular polysaccharide products. These laminae become thick enough to drape over individual stromatolite heads. The diatoms responsible for these deposits are Amphora aff. A. katii Selva, Nitzschia denticula Grun., and six other species. At Cuatro Ciénegas, in addition to the diatomaceous laminae, carbonate-rich cyanobacterial layers, dominated by two cyanobacterial species with different fabrics and porosities, are also present and contribute substantially to the growth of the stromatolites. In both the Laegerdorf and Cuatro Ciénegas examples, entire stromatolites or thick laminations on stromatolites are built by a small number of diatom species which produce copious amounts of extracellular stalk, gel, and sheath material, a propertuy they share with cyanobacterial stromatolite builders.     

Lake circulation and sediment transport in Lake Myvatn

Lake circulation and sediment transport in Lake Myvatn have been calculated using AQUASEA, a numerical model developed by Vatnaskil Consulting Engineers. The goal of the modelling was to calculate changes in sediment transport within the lake due to changes in lake bathymetry caused by diatomite mining. The model uses the Galerkin finite element method and consists of a hydrodynamic flow model and a transport-dispersion model. The flow model is based on the shallow water equations and the wave equation. The transport model is based on the conservation of mass for suspended sediment. The model was calibrated against measurements performed during the summer of 1992. These included measurements of water elevation, current velocity, wave height, and concentration of suspended sediment. After calibration, the model was run for different mining scenarios to determine their impact on the sediment transport in the lake.     

Holocene coral reef accretion in Hawaii: a function of wave exposure and sea level history

 In the high Hawaiian Islands, significant accretion due to coral reef growth is limited by wave exposure and sea level. Holocene coral growth and reef accretion was measured at four stations off Oahu, Hawaii, chosen along a gradient in wave energy from minimum to maximum exposures. The results show that coral growth of living colonies (linear extension) at optimal depths is comparable at all stations (7.7–10.1 mm/y), but significant reef accretion occurs only at wave sheltered stations. At wave sheltered stations in Hanauma Bay and Kaneohe Bay, rates of long term reef accretion are about 2.0 mm/y. At wave exposed stations, off Mamala Bay and Sunset Beach, reef accretion rates are virtually zero in both shallow (1 m) and deeper (optimal) depths (12 m). At wave sheltered stations, such as Kaneohe Bay and Hanauma Bay, Holocene reef accretion is on the order of 10–15 m thick. At wave exposed stations, Holocene accretion is represented by only a thin veneer of living corals resting on antecedent Pleistocene limestone foundations. Modern coral communities in wave exposed environments undergo constant turnover associated with mortality and recruitment or re-growth of fragmented colonies and are rarely thicker than a single living colony. Breakage, scour, and abrasion of living corals during high wave events appears to be the major source of mortality and ultimately limits accretion to wave sheltered environments. Depth is particularly important as a modulator of wave energy. The lack of coral reef accretion along shallow open ocean coastlines may explain the absence of mature barrier reefs in the high Hawaiian Islands. Accepted: 14 May 1998     

枸杞岛潮下带沙地生境鱼类群落结构和季节变化

为了解岛礁水域沙地生境的鱼类群落结构特征,评估该生境对鱼类资源养护的潜在作用,于2009年采用多网目组合刺网对枸杞岛潮下带沙质区域进行了逐月采样,同步设置岩礁为对照生境.应用α和β多样性指数结合相对重要性指数、相对渔获率、ABC曲线和聚类排序方法对两种生境中的鱼类组成、多样性变化和群落格局与变化进行了全面探讨.全年在沙地和岩礁生境共采集鱼类63种,隶属11目38科56属,2种生境各自出现的鱼类皆为46种.受暖水种频繁出现在沙地生境的影响,潮下带沙质区域鱼类区系比岩礁生境略显丰富,且春夏季的渔获量普遍高于岩礁生境;由于种类组成均匀度较低,沙地生境各季节的α多样性普遍较低,夏季显著低于岩礁生境.日本须鳎是沙地生境的指示种,为早春、夏末和秋冬季沙地底层优势鱼种.5-7月鳀、多数月份鲻和10月份鳗鲇等种类对沙地生境的阶段性利用,使其形成了区别于以趋礁性鱼类为优势类群的岩礁生境的群落格局和季节动态.沙地是多种鱼类幼鱼阶段的庇护所和饵料场,是鲆鲽类的良好栖息地.沙地生境在维持鱼类区系和养护鱼类资源方面具有重要作用.     

Wave-energy distribution and hurricane effects on Margarita Reef,southwestern Puerto Rico

Wave measurements at Margarita Reef in southwestern Puerto Rico show that wave height decreases as waves travel across the forereef and into the backreef. Wave spectra reveal the presence of two wave trains impinging on the reef during the study: trade-wind waves and locally generated seas. Significant wave height calculated from the spectra show an average reduction of 19.5% from 20- to 10-m isobaths and 26% from 20- to 5-m isobaths. The significant wave height decreases an average of 82% for waves traveling across the reef crest and into the backreef. Wave-energy reduction is 35% from 20- to 10-m isobaths and 45% from 20- to 5-m isobaths. Energy loss across the reef crest is 97% which translates into the formation of strong across-the-reef currents capable of moving coarse sediment. Refraction diagrams of waves impinging on the reef from the SE provide a display of wave energy distribution around the reef. The transmission coefficients calculated for trade-wind waves and locally generated seas have means of 18% and 39%, respectively. A wave height model with negligible energy dissipation, produces wave height estimates that are, in general, within the ±15% error bands. Results of wave-energy changes from this study were applied to waves representative of hurricane conditions at the reef. Aerial photographs of the reef before and after the passage of hurricanes were compared to assess the reef changes. Changes observed in the photographs are interpreted as products of sediment transport by hurricane-generated waves. The patterns of change agree with the refraction diagrams suggesting that waves were the main agents of change at margarita Reef during severe storms. Correspondence to: A. Lugo-Fernández}     

Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia

Stromatolites, organosedimentary structures formed by microbial activity, are found throughout the geological record and are important markers of biological history. More conspicuous in the past, stromatolites occur today in a few shallow marine environments, including Hamelin Pool in Shark Bay, Western Australia. Hamelin Pool stromatolites often have been considered contemporary analogs to ancient stromatolites, yet little is known about the microbial communities that build them. We used DNA-based molecular phylogenetic methods that do not require cultivation to study the microbial diversity of an irregular stromatolite and of the surface and interior of a domal stromatolite. To identify the constituents of the stromatolite communities, small subunit rRNA genes were amplified by PCR from community genomic DNA with universal primers, cloned, sequenced, and compared to known rRNA genes. The communities were highly diverse and novel. The average sequence identity of Hamelin Pool sequences compared to the >200,000 known rRNA sequences was only approximately 92%. Clone libraries were approximately 90% bacterial and approximately 10% archaeal, and eucaryotic rRNA genes were not detected in the libraries. The most abundant sequences were representative of novel proteobacteria (approximately 28%), planctomycetes ( approximately 17%), and actinobacteria (approximately 14%). Sequences representative of cyanobacteria, long considered to dominate these communities, comprised <5% of clones. Approximately 10% of the sequences were most closely related to those of alpha-proteobacterial anoxygenic phototrophs. These results provide a framework for understanding the kinds of organisms that build contemporary stromatolites, their ecology, and their relevance to stromatolites preserved in the geological record.     

Physical processes in an Indian Ocean atoll

 Detailed measurements of water levels, and tide and wave-induced currents were undertaken to examine physical processes and their relationship with morphology in the Cocos (Keeling) Islands, a medium sized atoll in the Indian Ocean. Results indicate that the atoll structure controls both lagoon circulation and the spatial pattern of energy distribution. Lagoon circulation is tide dominated (currents 16–31 cms^-1) with flushing (2–5 days) of the lagoon occurring through the deep leeward passages. Wave- and tide-driven unidirectional flows through shallow passages (26–65 cms^-1) are important mechanisms of ocean to lagoon water exchange and contribute up to 24% of the lagoon neap tide prism. Reef flats are dominated by wave energy (maximum velocity 140 cms^-1, east) with measurements of the attenuation of wave energy between reef flats and shallow lagoon (80–90%) conforming to measurements from fringing and barrier reefs. Spectral analysis shows that the characteristics of wave energy vary on different sectors of the atoll, with gravity wave energy dominating the east, and infragravity wave energy dominating the southern reef flat and passages. Wave setup at the reef crest is considered to be responsible for an identified 0.1 m higher water level in the southern as opposed to eastern and northern atoll, which promotes higher reef flat growth. Transmission of gravity waves across reef flats requires threshold water depths of 0.65 (east) and 0.70 m (south). The higher southern reef is an effective filter of gravity wave energy for most tidal elevations. Differences in the type and magnitude of physical processes within the atoll are discussed with relation to geomorphic development on Cocos. Accepted: 28 February 1998     

Grain trapping by filamentous cyanobacterial and algal mats: implications for stromatolite microfabrics through time

Archean and Proterozoic stromatolites are sparry or fine‐grained and finely laminated; coarse‐grained stromatolites, such as many found in modern marine systems, do not appear until quite late in the fossil record. The cause of this textural change and its relevance to understanding the evolutionary history of stromatolites is unclear. Cyanobacteria are typically considered the dominant stromatolite builders through time, but studies demonstrating the trapping and binding abilities of cyanobacterial mats are limited. With this in mind, we conducted experiments to test the grain trapping and binding capabilities of filamentous cyanobacterial mats and trapping in larger filamentous algal mats in order to better understand grain size trends in stromatolites. Mats were cut into squares, inclined in saltwater tanks at angles from 0 to 75° (approximating the angle of lamina in typical stromatolites), and grains of various sizes (fine sand, coarse sand, and fine pebbles) were delivered to their surface. Trapping of grains by the cyanobacterial mats depended strongly on (i) how far filaments protruded from the sediment surface, (ii) grain size, and (iii) the mat's incline angle. The cyanobacterial mats were much more effective at trapping fine grains beyond the abiotic slide angle than larger grains. In addition, the cyanobacterial mats actively bound grains of all sizes over time. In contrast, the much larger algal mats trapped medium and coarse grains at all angles. Our experiments suggest that (i) the presence of detrital grains beyond the abiotic slide angle can be considered a biosignature in ancient stromatolites where biogenicity is in question, and, (ii) where coarse grains are present within stromatolite laminae at angles beyond the abiotic angle of slide (e.g., most modern marine stromatolites), typical cyanobacterial‐type mats are probably not solely responsible for the construction, giving insight into the evolution of stromatolite microfabrics through time.