An application of a bioenergetics model to Eurasian perch (Perca fluviatilis L.)

A bioenergetics model was developed for Eurasian perch ( Perca fluviatilis L.) by revising an existing model for yellow perch and walleye. Data were gathered from field studies and the literature. Besides adjusting the original parameters of the model, effects of season on consumption and metabolic rates were added. The predictive capability of the revised model was high both concerning the levels of growth and its seasonal development in the Baltic coastal waters to which the model was applied. Perch young-of-the-year attained almost maximum consumption and growth except in the highest temperatures experienced. In larger fish, the model estimated consumption to be about 50 per cent of the maximum possible rate.     

The distribution and abundance of young (I +–II +) perch, Perca fluviatilis L., in a deep eutrophic lake, England

Seasonal changes in the vertical and horizontal distribution of young (I +–II +) perch in Rostherne Mere, a deep (max. depth 31.0 m) eutrophic lake are described using sonar. During the summer (June–August), perch were present within the thermocline (9–14° C) between 7 and 10 m. There was no significant difference between samples during this period, nor was there any evidence of shoaling. From September onwards perch moved into deeper waters. By late winter fish had become patchy in their distribution. Total numbers, during the summer, were estimated to be 988 ha ¹ with 95% confidence limits of ±115 (biomass 98.8 kg ha ⁻¹). Densities (no. m⁻³) fell by over 90% after the autumn overturn. The implications for predators are discussed. Acoustic sampling provides a useful, non-destructive method of sampling eutrophic lakes on a routine basis. Information obtained is of ecological, behavioural and physiological interest.     

Effect of water temperature and size of females on the timing of spawning of perch Perca fluviatilis L. in Lake Geneva from 1984 to 2003

The effects of water temperature on the timing of spawning of perch Perca fluviatilis in Lake Geneva were assessed in a 20 year survey (1984–2003). Spawning started at the end of April or at the beginning of May, when the water temperature rose to >10° C, but most of the spawns were laid when water temperature exceeded 12° C. This led to a positive correlation between the date of the mid-spawning period and the date when the water temperature rose to >12° C. Large perch had a tendency to spawn later than the small ones, which led to a positive correlation between the date of mid-spawning period and the yearly mean width of perch egg-ribbons. The coefficient of multiple determination between the date of mid-spawning period and the mean width of the ribbon of spawn, combined with the date when the water temperature rose to >12° C was r ²= 0·77. The perch generally chose deeper spawning places (12 m) at the end of the spawning period than at the beginning (4 m), which was related to water temperature.     

Seasonal studies of the biology of Achtheres percarum in perch, Perca fluviatilis, from four Finnish lakes over a 3-year period

Achtheres percarum infection on the gills of perch Perca fluviatilis was studied from four lakes in central Finland in monthly or bimonthly samples of fish during a 3-year period. The highest prevalence and intensity of infection (30%, 0.7 copepods/fish) were found in the oligotrophic, unpolluted Lake Peurunka and the lowest (6%, 0.1 copepods/fish) in the eutrophic and polluted Lake Vatia. According to hierarchical loglinear models the prevalence of A. percarum infection was related to the lake, but not to the year. However, when logit models were constructed such that two 'seasons' ('cold' and 'warm' periods) were included, it was apparent that the year also influenced the prevalence of A. percarum , but only during the 'warm' period of the year. Achtheres percarum had an age dependent relationship only in Lake Peurunka, where the infection increased with increasing age of the fish. Some developmental stages of A. percarum parasitizing the gills of perch are described. Data on the seasonal occurrence of A. percarum developmental stages are given and it is suggested that at least two generations are produced annually.     

Diversifying selection on MHC class I in the house sparrow (Passer domesticus)

Genes of the major histocompatibility complex (MHC) are the most polymorphic loci known in vertebrates. Two main hypotheses have been put forward to explain the maintenance of MHC diversity: pathogen-mediated selection and MHC-based mate choice. Host–parasite interactions can maintain MHC diversity via frequency-dependent selection, heterozygote advantage, and diversifying selection (spatially and/or temporally heterogeneous selection). In this study, we wished to investigate the nature of selection acting on the MHC class I across spatially structured populations of house sparrows ( Passer domesticus ) in France. To infer the nature of the selection, we compared patterns of population differentiation based on two types of molecular markers: MHC class I and microsatellites. This allowed us to test whether the observed differentiation at MHC genes merely reflects demographic and/or stochastic processes. At the global scale, diversifying selection seems to be the main factor maintaining MHC diversity in the house sparrow. We found that (i) overall population differentiation at MHC was stronger than for microsatellites, (ii) MHC marker showed significant isolation by distance. In addition, the slope of the regression of F _ST on geographical distance was significantly steeper for MHC than for microsatellites due to a stronger pairwise differentiation between populations located at large geographical distances. These results are in agreement with the hypothesis that spatially heterogeneous selective pressures maintain different MHC alleles at local scales, possibly resulting in local adaptation.     

Temporal distribution of perch (Perca fluviatilis L.) in a lake-reservoir (Moselle,France): analysis of catches with vertical gill nets

Four fishing periods within a yearly cycle between 1990 and 1991 were carried out in the lake-reservoir of Mirgenbach, lake of the nuclear power station in Cattenom (Moselle, France). The catches of perch (Perca fluviatilis L.) were analyzed.In all, about 630 perch were caught in 8 sampling stations. The analysis of seasonal catches of this carnivorous fish was made according to size and mesh; a simple correspondence factor analysis enabled us to establish that this species lived in different areas depending on the season.     

Subtle but ubiquitous selection on body size in a natural population of collared flycatchers over 33 years

Understanding the magnitude and long‐term patterns of selection in natural populations is of importance, for example, when analysing the evolutionary impact of climate change. We estimated univariate and multivariate directional, quadratic and correlational selection on four morphological traits (adult wing, tarsus and tail length, body mass) over a time period of 33 years (≈ 19 000 observations) in a nest‐box breeding population of collared flycatchers (Ficedula albicollis). In general, selection was weak in both males and females over the years regardless of fitness measure (fledged young, recruits and survival) with only few cases with statistically significant selection. When data were analysed in a multivariate context and as time series, a number of patterns emerged; there was a consistent, but weak, selection for longer wings in both sexes, selection was stronger on females when the number of fledged young was used as a fitness measure, there were no indications of sexually antagonistic selection, and we found a negative correlation between selection on tarsus and wing length in both sexes but using different fitness measures. Uni‐ and multivariate selection gradients were correlated only for wing length and mass. Multivariate selection gradient vectors were longer than corresponding vector of univariate gradients and had more constrained direction. Correlational selection had little importance. Overall, the fitness surface was more or less flat with few cases of significant curvature, indicating that the adaptive peak with regard to body size in this species is broader than the phenotypic distribution, which has resulted in weak estimates of selection.     

The predation on Asellus aquaticus (L.) by perch,Perca fluviatilis (L.), in a small forest lake

Asellus aquaticus (L.) was the most important benthic food item for perch, Perca fluviatilis (L.), in a small, extremely humic forest lake in southern Finland. The proportion of A. aquaticus in the diet of perch varied according to the former's availability, which, in turn, depended on its life cycle. Perch 11.0–12.9 cm (total length) most frequently fed on A. aquaticus; smaller and larger perch fed more frequently on crustacean zooplankton and aquatic insect larvae, respectively. The high density of the perch population, the importance of A. aquaticus in the benthos of the study lake and the general high activity level of the prey resulted in a high predation (0.1–1.8% per day). The population of A. aquaticus was also limited by the scarcity of macrophytic vegetation and the small area of oxygenated littoral in the lake.     

Isolation and characterization of major histocompatibility complex (MHC) class II B genes in the Barn owl (Aves: Tyto alba)

We isolated major histocompatibility complex class II B (MHCIIB) genes in the Barn owl (Tyto alba). A PCR-based approach combined with primer walking on genomic and complementary DNA as well as Southern blot analyses revealed the presence of two MHCIIB genes, both being expressed in spleen, liver, and blood. Characteristic structural features of MHCIIB genes as well as their expression and high non-synonymous substitution rates in the region involved in antigen binding suggest that both genes are functional. MHC organization in the Barn owl is simple compared to passerine species that show multiple duplications, and resembles the minimal essential MHC of chicken.     

Divergent patterns of selection on the DAB and DXB MHC class II loci in Xiphophorus fishes

Two MHC class II loci, DAB (a classical class II locus) and DXB (putatively a non-classical class II locus), were sequenced in samples of individuals from two populations of swordtail fish, Xiphophorus multilineatus and X. pygmaeus. The DAB locus showed higher levels of genetic variation in the B1-encoding region, (putative binding region) than the DXB locus. We used two methods to investigate d_N/d_S ratios. The results from a maximum likelihood method based on phylogenetic relationships indicated positive selection on the B1 region of DAB (this method could not be used on DXB). Results from a coalescent-based method also showed evidence for positive selection in the B1 region of DAB, but only weak evidence for selection on the DXB. Further analyses indicated that recombination is an important source of variation in the B1 region of DAB, but has a relatively small effect on DXB. Overall, our results were consistent with the hypothesis that the DAB locus is under positive selection driven by antagonistic coevolution, and that the DXB locus plays the role of a non-classical MHC II locus. We also used simulations to investigate the presence of an elevated synonymous substitution rate in the binding region. The simulations revealed that the elevated rate could be caused by an interaction between positive selection and codon bias. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

MHC class II beta sequence diversity in the deer mouse (Peromyscus maniculatus): implications for models of balancing selection

We studied population polymorphism at a major histocompatibility complex (MHC) class II beta gene in the deer mouse (Peromyscus maniculatus). We found that: (i) a single population of P. maniculatus has significantly higher levels of DNA and protein sequence diversity than worldwide samples from homologous genes in other taxa, including humans and mice; and (ii) the genealogy of allelic sequences in P. maniculatus deviates significantly from theoretical expectation under a model of symmetric balancing selection, in that alleles are relatively more divergent than expected. We suggest that the observation of high levels of pairwise allelic sequence divergence and deviation of the genealogy from theoretical expectation in P. maniculatus together provide support for a divergent allele advantage model for the maintenance of MHC polymorphism.     

The importance of selection at the level of the pair over 25 years in a natural population of birds

Knowledge of the pattern of selection in natural populations is fundamental for our understanding of the evolutionary process. Selection at higher levels has gained considerable theoretical support in recent years, and one possible level of selection is the breeding pair where fitness is a function of the pair and cannot be reduced to single individuals. We analyzed the importance of pair‐level selection over 25 years in a natural population of the collared flycatcher. Pair‐level selection was significant in five and probably in another 9 years. The relative importance of pair‐level selection varied over years and can have stronger or the same strength as directional selection. This means that selection can act on the combination of the breeding pair in addition to selection on each individual separately. Overall, the conservative estimates obtained here show that this is a potentially important form of selection.     

Contrasting patterns of selection acting on MHC class I and class II DRB genes in the Alpine marmot (Marmota marmota)

The major histocompatibility complex (MHC) genes code for proteins that play a critical role in the immune system response. The MHC genes are among the most polymorphic genes in vertebrates, presumably due to balancing selection. The two MHC classes appear to differ in the rate of evolution, but the reasons for this variation are not well understood. Here, we investigate the level of polymorphism and the evolution of sequences that code for the peptide-binding regions of MHC class I and class II DRB genes in the Alpine marmot (Marmota marmota). We found evidence for four expressed MHC class I loci and two expressed MHC class II loci. MHC genes in marmots were characterized by low polymorphism, as one to eight alleles per putative locus were detected in 38 individuals from three French Alps populations. The generally limited degree of polymorphism, which was more pronounced in class I genes, is likely due to bottleneck the populations undergone. Additionally, gene duplication within each class might have compensated for the loss of polymorphism at particular loci. The two gene classes showed different patterns of evolution. The most polymorphic of the putative loci, Mama-DRB1, showed clear evidence of historical positive selection for amino acid replacements. However, no signal of positive selection was evident in the MHC class I genes. These contrasting patterns of sequence evolution may reflect differences in selection pressures acting on class I and class II genes.     

Extremely high MHC class I variation in a population of a long-distance migrant,the Scarlet Rosefinch (<Emphasis Type="Italic">Carpodacus erythrinus</Emphasis>)

Although the number of studies focusing on the major histocompatibility complex (MHC) in non-model vertebrates is increasing, results are often contradictory, and the structure of MHC is still poorly understood in wild species. Here, we describe the structure and diversity of exon 3 of MHC class I in a passerine bird, the Scarlet Rosefinch (Carpodacus erythrinus). Using capillary electrophoresis single-strand conformation polymorphism, we identified 82 different MHC class I variants in one Rosefinch population nesting at one site in the Czech Republic. Thus far, this is the highest intra-populational MHC class I variation observed in birds. We have not found support for ‘minimal essential’ MHC in this species since individuals exhibited between three and nine different exon 3 sequences, indicating that there may be at least five amplified MHC class I genes. By cloning, we obtained and analysed 29 exon sequences and found that all of them could be translated into potentially functional proteins. We also show that strong positive selection appears to be acting mainly, but not only, on previously described antigen-binding sites in MHC class I genes. Furthermore, our results indicate that recombination has played an important role in generating genetic diversity of these genes in the Scarlet Rosefinch; we discuss the significance of this extremely high genetic diversity in light of the life history traits of this species, such as long-distance migration. The sequence data described in this paper are accessible in GenBank data library under accession numbers FJ392762–FJ392790.     

Influence of oceanic factors on Anguilla anguilla (L.) over the twentieth century in coastal habitats of the Skagerrak,southern Norway

The European eel (Anguilla anguilla L.) is distributed in coastal and inland habitats all over Europe, but spawns in the Sargasso Sea and is thus affected by both continental and oceanic factors. Since the 1980s a steady decline has been observed in the recruitment of glass eels to freshwater and in total eel landings. The eel is considered as critically endangered on the International Union for the Conservation of Nature and Natural Resources Red List of species. The Skagerrak beach seine survey from Norway constitutes the longest fishery-independent dataset on yellow/silver eels (starting in 1904). The Skagerrak coastal region receives larvae born in the Sargasso Sea spawning areas that have followed the Gulf Stream/North Atlantic Drift before they penetrate far into the North Sea. The Skagerrak coastal time series is therefore particularly valuable for exploring the impacts of oceanic factors on fluctuations in eel recruitment abundance. Analyses showed that Sargasso Sea surface temperature was negatively correlated with eel abundance, with a lag of 12 years revealing a cyclic and detrimental effect of high temperatures on the newly hatched larvae. The North Atlantic Oscillation index and inflow of North Atlantic water into the North Sea were negatively correlated with eel abundance, with a lag of 11 years. Increased currents towards the North Atlantic during high North Atlantic Oscillation years may send larvae into the subpolar gyre before they are ready to metamorphose and settle, resulting in low recruitment in the northern part of the distribution area for these years. The Skagerrak time series was compared with glass eel recruitment to freshwater in the Netherlands (Den Oever glass eel time series), and similar patterns were found revealing a cycle linked to changes in oceanic factors affecting glass eel recruitment. The recent decline of eels in the Skagerrak also coincided with previously documented shifts in environmental conditions of the North Sea ecosystem.     

Change and stability in a steep morph‐frequency cline in the snail Cepaea nemoralis (L.) over 43 years

Populations of the polymorphic land snail Cepaea nemoralis (L.) from Deepdale, Derbyshire, UK, sampled in 1965–67, showed a pattern of area effects, with steep clines among groups of populations differing in shell colour and banding morph frequencies. In 2010, most of these populations were resampled. In particular, a continuous transect made in 1967 of 42 quadrats (18.34 × 18.34 m) across a steep cline in several morph frequencies was completely resampled. In the dale as a whole, yellow shells had increased in frequency. In the transect, the frequencies of banding morphs showed no significant changes, although colour morphs showed some changes. Pink shells had increased in frequency in a section in which scrub had developed, and brown shells had increased in frequency in the area in which they had originally been at the highest frequency. In each case, the selection coefficients were of the order of 4%. Yellow had increased elsewhere. Nevertheless, both in the dale as a whole and in the transect, the pattern of geographical change in morph frequencies had remained essentially the same. Estimates of migration based on previous studies of marked snails and on modelling of the effect of drift and migration suggest that, regardless of whether the cline is a product of differential selection or of the gradual merging of previously separate founding populations, it has been in existence for a long time, and that migration occurs over greater distances than estimated from direct observation on marked snails. Although we can demonstrate that selection has occurred, the origin and maintenance of the cline and others similar to it remain in doubt; the development and maintenance of polymorphism in this species may require consideration of several processes operating on different time scales. © 2012 The Linnean Society of London     

Soil CO<Subscript>2</Subscript> efflux in loblolly pine (<Emphasis Type="Italic">Pinus taeda</Emphasis> L.) plantations on the Virginia Piedmont and South Carolina Coastal Plain over a rotation-length chronosequence

We measured soil surface CO₂ efflux (F_s) in loblolly pine stands (Pinus taeda L.) located on the Virginia Piedmont (VA) and South Carolina Coastal Plain (SC) in efforts to assess the impact climate, productivity, and cultural practices have on F_s in the managed loblolly pine ecosystem. The effect of stand age on F_s was examined using a replicated chronosequence approach in which stands ranging from 1 to 25 years since planting were investigated. Soil CO₂ efflux was measured on both VA and SC sites for over a year using a closed dynamic system. Multiple linear regression was used to evaluate F_s correlates and examine the relationship between candidate explanatory variables and F_s. Soil temperature (top 10 cm) was the major correlate with F_s on both locations. We observed a positive age effect on F_s in VA stands and no relationship between age and F_s in SC stands. Annual soil C efflux declined with stand age in SC due to both reductions in soil temperatures as crown closure occurs and a diminishing heterotrophic C substrate pool. Annual estimated efflux ranges from 16.7 to 13.2 Mg C ha⁻¹ for 1 and 20-year-old stands, respectively. In contrast, annual soil C efflux increased with age in VA stands as a result of the positive relationship between stand age and F_s, which appears to be related to an increase in the contribution of root respiration to total F_s over time. In VA stands, efflux estimates range from 7.6 to 12.3 Mg C ha⁻¹ for 1 and 20-year-old stands, respectively. These results demonstrate the need to further consider the impact forest management and within-region variability have on soil C efflux over time when estimating C budgets.