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1.
Unidirectional flux of solutes into the intestinal mucosal cells is determined by the rate of movement of these molecules across both an unstirred water layer and the microvillus membrane of the epithelial cell. Therefore, an equation is derived in this paper that describes the velocity of active transport as a function of the characteristics of both the transport carrier in the membrane and the resistance of the overlying unstirred water layer. Using this equation a series of curves are presented that depict the effect on the kinetics of active transport of varying the thickness (d) or surface area (Sw) of the unstirred water layer, the free diffusion coefficient (D) of the solute, the distribution of active transport sites along the villus (?n), the maximal transport velocity (Jmd) and the true Michaelis constant (Km). These theoretical curves illustrate the serious limitations inherent in interpretation of previously published data dealing with active transport processes in the intestine.  相似文献   

2.
This paper reports a theoretical analysis of osmotic transients and an experimental evaluation both of rapid time resolution of lumen to bath osmosis and of bidirectional steady-state osmosis in isolated rabbit cortical collecting tubules exposed to antidiuretic hormone (ADH). For the case of a membrane in series with unstirred layers, there may be considerable differences between initial and steady-state osmotic flows (i.e., the osmotic transient phenomenon), because the solute concentrations at the interfaces between membrane and unstirred layers may vary with time. A numerical solution of the equation of continuity provided a means for computing these time-dependent values, and, accordingly, the variation of osmotic flow with time for a given set of parameters including: Pf (cm s–1), the osmotic water permeability coefficient, the bulk phase solute concentrations, the unstirred layer thickness on either side of the membrane, and the fractional areas available for volume flow in the unstirred layers. The analyses provide a quantitative frame of reference for evaluating osmotic transients observed in epithelia in series with asymmetrical unstirred layers and indicate that, for such epithelia, Pf determinations from steady-state osmotic flows may result in gross underestimates of osmotic water permeability. In earlier studies, we suggested that the discrepancy between the ADH-dependent values of Pf and PDDw (cm s–1, diffusional water permeability coefficient) was the consequence of cellular constraints to diffusion. In the present experiments, no transients were detectable 20–30 s after initiating ADH-dependent lumen to bath osmosis; and steady-state ADH-dependent osmotic flows from bath to lumen and lumen to bath were linear and symmetrical. An evaluation of these data in terms of the analytical model indicates: First, cellular constraints to diffusion in cortical collecting tubules could be rationalized in terms of a 25-fold reduction in the area of the cell layer available for water transport, possibly due in part to transcellular shunting of osmotic flow; and second, such cellular constraints resulted in relatively small, approximately 15%, underestimates of Pf.  相似文献   

3.
Despite methylmercury (MeHg) production in boreal wetlands being a research focus for decades, little is known about factors in control of methylation and demethylation rates and the effect of wetland type. This is the first study reporting potential Hg methylation (k m ) and MeHg demethylation rate constants (k d ) in boreal wetland soils. Seven wetlands situated in northern and southern Sweden were characterized by climatic parameters, nutrient status (e.g. type of vegetation, pH, C/N ratio, specific UV-absorption), iron and sulfur biogeochemistry. Based on nutrient status, the wetlands were divided into three groups; (I) three northern, nutrient poor fens, (II) a nutrient gradient ranging from an ombrotrophic bog to a fen with intermediate nutrient status, and (III) southern, more nutrient rich sites including two mesotrophic wetlands and one alder (Alnus) forest swamp. The k m /k d ratio in general followed %MeHg in soil and both measures were highest at the fen site with intermediate nutrient status. Northern nutrient poor fens and the ombrotrophic bog showed intermediate values of %MeHg and k m /k d . The two mesotrophic wetlands showed the lowest %MeHg and k m /k d , whereas the alder swamp had high k m and k d , resulting in an intermediate k m /k d and %MeHg. Molybdate addition experiments suggest that net MeHg production was mainly caused by the activity of sulfate reducing bacteria. A comparison with other studies, show that k m and %MeHg in boreal freshwater wetlands in general are higher than in other environments. Our results support previous suggestions that the highest MeHg net production in boreal landscapes is to be found in fens with an intermediate nutrient status.  相似文献   

4.
The values of the affinity constants (kd, ka, and KD) that are determined by label-free interaction analysis methods are affected by the ligand density. This article outlines a surface plasmon resonance (SPR) imaging method that yields high-throughput globally fitted affinity ranking values using a 96-plex array. A kinetic titration experiment without a regeneration step has been applied for various coupled antibodies binding to a single antigen. Globally fitted rate (kd and ka) and dissociation equilibrium (KD) constants for various ligand densities and analyte concentrations are exponentially interpolated to the KD at Rmax = 100 RU response level (KDR100).  相似文献   

5.
In this work we describe the optimization of a lead compound based on the quinazoline template to give a new series of potent pyrido[3,2-d]pyrimidines as histamine H4 receptor antagonists. The pyrido[3,2-d]pyrimidine ligands have significantly reduced hERG binding compared to clinical stage compound PF-3893787 while showing good affinities at the human and rodent histamine receptors. The receptor residence time of several of these new compounds was determined for the human H4R and compared with JNJ7777120 and PF-3893787. The pyrido[3,2-d]pyrimidines showed residence times lower than JNJ7777120 but comparable to the residence time of PF-3893787. Overall, the pyrido[3,2-d]pyrimidines show an excellent in vitro profile that warrants their further investigation in relevant models of human disease.  相似文献   

6.
Inactivation of the cellulase of Trichoderma reesei (EC 3.2.1.4) by shear, is of sufficient magnitude to merit consideration in the design of equipment for the enzymatic hydrolysis of cellulose. The inac inactivation constant, kd, is a function of the flow rate of the enzyme solution through a fine capillary tube. kd increased slowly at low shear stress, and much more rapidly when the shear stress was greater than 15 dynes cm?2.  相似文献   

7.
The Min proteins (MinC, MinD, and MinE) form a pole-to-pole oscillator that controls the spatial assembly of the division machinery in Escherichia coli cells. Previous studies identified that interactions of MinD with phospholipids positioned the Min machinery at the membrane. We extend these studies by measuring the affinity, kinetics, and ATPase activity of E. coli MinD, MinE, and MinDE binding to supported lipid bilayers containing varying compositions of anionic phospholipids. Using quartz crystal microbalance measurements, we found that the binding affinity (Kd) for the interaction of recombinant E. coli MinD and MinE with lipid bilayers increased with increasing concentration of the anionic phospholipids phosphatidylglycerol and cardiolipin. The Kd for MinD (1.8 μm) in the presence of ATP was smaller than for MinE (12.1 μm) binding to membranes consisting of 95:5 phosphatidylcholine/cardiolipin. The simultaneous binding of MinD and MinE to membranes revealed that increasing the concentration of anionic phospholipid stimulates the initial rate of adsorption (kon). The ATPase activity of MinD decreased in the presence of anionic phospholipids. These results indicate that anionic lipids, which are concentrated at the poles, increase the retention of MinD and MinE and explain its dwell time at this region of bacterial cells. These studies provide insight into interactions between MinD and MinE and between these proteins and membranes that are relevant to understanding the process of bacterial cell division, in which the interaction of proteins and membranes is essential.  相似文献   

8.
Liu YL  Chiang YH  Liu GY  Hung HC 《PloS one》2011,6(6):e21314
Peptidylarginine deiminase 4 (PAD4) is a homodimeric enzyme that catalyzes Ca2+-dependent protein citrullination, which results in the conversion of arginine to citrulline. This paper demonstrates the functional role of dimerization in the regulation of PAD4 activity. To address this question, we created a series of dimer interface mutants of PAD4. The residues Arg8, Tyr237, Asp273, Glu281, Tyr435, Arg544 and Asp547, which are located at the dimer interface, were mutated to disturb the dimer organization of PAD4. Sedimentation velocity experiments were performed to investigate the changes in the quaternary structures and the dissociation constants (K d) between wild-type and mutant PAD4 monomers and dimers. The kinetic data indicated that disrupting the dimer interface of the enzyme decreases its enzymatic activity and calcium-binding cooperativity. The K d values of some PAD4 mutants were much higher than that of the wild-type (WT) protein (0.45 µM) and were concomitant with lower k cat values than that of WT (13.4 s−1). The K d values of the monomeric PAD4 mutants ranged from 16.8 to 45.6 µM, and the k cat values of the monomeric mutants ranged from 3.3 to 7.3 s−1. The k cat values of these interface mutants decreased as the K d values increased, which suggests that the dissociation of dimers to monomers considerably influences the activity of the enzyme. Although dissociation of the enzyme reduces the activity of the enzyme, monomeric PAD4 is still active but does not display cooperative calcium binding. The ionic interaction between Arg8 and Asp547 and the Tyr435-mediated hydrophobic interaction are determinants of PAD4 dimer formation.  相似文献   

9.
Summary Charge-pulse relaxation studies with the positively charged PV-K+ complex (cyclo-(d-Val-l-Pro-l-Val-d-Pro)3) and the negatively charged lipophilic ion dipicrylamine (DPA) have been performed in order to study the influence of structural properties on ion transport through lipid bilayer membranes. First, the thickness of monoolein membranes was varied over a wide range using differentn-alkanes and slovent-free membranes. The thickness (d) of the hydrocarbon core of these membranes varied between 4.9 and 2.5 nm. For both transport systems the partition coefficient was found to be rather insensitive to variations ind. The same was valid for the translocation rate constantk MS of PV-K+, whereas a strong increase of the translocation rate constantk i of DPA-with decreasingd was observed. In a further set of experimental conditions the structure of the lipids, such as number and position of the double bonds in the hydrocarbon chain and its chain length as well as the nature of the polar head group, was varied. The translocation constantk MS of PV-K+ transport was found to be much more sensitive to these variations thank i of DPA-.Much larger variations ink i andk MS were observed in membranes made from lipids with ether instead of ester linkages between glycerol backbone and hydrocarbon chain. The results are in qualitative agreement with the surface potentials of monolayers made from corresponding lipids. Increasing amounts of cholesterol in membranes of dioleoylphosphatidylcholine caused a strong decrease ofk MS (PV-K+), whereask i was found to be rather insensitive to this variation.In monoolein membranes cholesterol causes a decrease ofk MS up to sixfold and a increase ofk i up to eightfold. The partition coefficient of DPA was insensitive to cholesterol, whereas of PV-K+ was found to decrease about eightfold in these membranes. The influence of cholesterol onk MS is discussed on the basis of viscosity changes in the membrane and the change ink i of DPA and of PV-K+ on the basis of a possible change of the dipole potential of the membranes. The other sterols, epicholesterol and ergosterol cause no change in the kinetics of the two probes.The different influence of membrane properties like thickness, viscosity, and dipole potential on the two transport systems is discussed under the assumption that the adsorption planes of the two probes have different positions in a membrane. Possibly because of a larger hydrophobic interaction, the adsorption plane of PV-K+ is located more towards the hydrocarbon side and that of DPA more towards the aqueous side of the dipole layer.  相似文献   

10.
The rates of deuterium exchange reactions of malondialdehyde (MDA) and deuterated malondialdehyde (MDAd) have been studied as a function of acidity and the content of dimethyl sulfoxide (DMSO) in binary mixtures with D2O . MDA incorporates deuterium from D2O solutions in a first-order reaction with a rate constant (kobs) that depends on the acid concentration. From this dependence, a catalytic constant, kcat, can be derived (kcatMDA = 2.25 × 105M?s?1). Similar kinetic behavior was found for MDAd in H2O solutions, and in this case, kcatMDA = 1.56 × 105M?1s?1. Results from reactions of MDA and MDAd in identical H2OD2O mixtures show that primary and secondary isotope effects are small (kH/kD = 1.13) and that solvent isotope effects cause most of the differences found between reactions in D2O and H2O. Reactions in binary DMSOd6D2O mixtures show a six-fold rate increase as the proportion of DMSOd6 increases from 50% to 90%. These results also illustrate the relatively high reactivity of MDA at pH values well above its pKa and the importance of medium composition on its reaction rate.  相似文献   

11.
Mark A. Jensen  Philip J. Elving 《BBA》1984,764(3):310-315
The rate constant, kd, for the dimerization of the free radical (NAD·), produced on the initial one-electron reduction of NAD+, was measured by double potential-step chronoamperometry, fast-scan cyclic voltammetry (cathodic-anodic peak current ratio) and slow-scan cyclic voltammetry (peak potential shift) for a medium in which neither NAD+ nor its reduction products are adsorbed at the solution/electrode interface. All three methods give concordant values of kd (approx. 3·107 M?1·s?1), which are in reasonable accord with the values determined by pulse radiolysis but are considerably greater than values previously determined electrochemically. For the NAD+/NAD· couple, the heterogeneous rate constant (ks,h) exceeds 1 cm·s?1 at 25°C and the formal potential (E0c) vs. sce is ? 1.155 V at 25°C and ? 1.149 V at 1°C at pH 9.1, with an uncertainty of about ±0.005 V.  相似文献   

12.
We have undertaken a study of the mechanism of bovine liver glutamate dehydrogenase self-association with scattered light temperature-jump and stopped-flow relaxation techniques. Our results indicate a “random association” mechanism in which association-dissociation reactions occur between all polymerized forms of the oligomer according to
where the specific rate-constants ka and kd are independent of chain length. At 15 °C we find ka = 1.5 × 106m−1s−1 and kd = 5 s−1. Standard thermodynamic functions and activation parameters have been determined from equilibrium and kinetic experiments at different temperatures. Large entropy effects and heat capacities indicate water participation in the self-aggregation process. We suggest that the rate-determining step in the association of glutamate dehydrogenase molecules is the “melting” of a layer of ordered water structure between two hydrophobic contact sites.  相似文献   

13.
The performance of a wastewater bench-scale ultrafiltration membrane bioreactor (MBR) treatment plant using pure oxygen to supply the aerobic conditions for 95 days was studied. The results showed the capacity of the MBR systems to remove organic material under a hydraulic retention time of 12 h and a sludge retention time of 39.91 days. Aeration represents its major power input; this is why the alpha-factor of the aeration and kinetic parameters (design parameters) were determined when the mixed liquid suspended solids (MLSS) was increased from 3420 to 12,600 mg/l in order to understand the system. An alpha-factor in the range 0.462-0.022 and the kinetic parameters measured with the respirometric method (KM of 73.954-3.647 mg/l, kd of 0.0142-0.104 day−1, kH of 0.1266-0.655 day−1, and the yield mean coefficient of 0.941) were obtained. Our study suggested significant changes in the behaviour of the biological system when the concentration of MLSS was increased.  相似文献   

14.
A single-molecule detection setup based on total internal reflection fluorescence (TIRF) microscopy has been used to investigate association and dissociation kinetics of unlabeled 30mer DNA strands. Single-molecule sensitivity was accomplished by letting unlabeled DNA target strands mediate the binding of DNA-modified and fluorescently labeled liposomes to a DNA-modified surface. The liposomes, acting as signal enhancer elements, enabled the number of binding events as well as the residence time for high affinity binders (Kd < 1 nM, koff < 0.01 s−1) to be collected under equilibrium conditions at low pM concentrations. The mismatch discrimination obtained from the residence time data was shown to be concentration and temperature independent in intervals of 1–100 pM and 23–46°C, respectively. This suggests the method as a robust means for detection of point mutations at low target concentrations in, for example, single nucleotide polymorphism (SNP) analysis.  相似文献   

15.
d-Amino acids have been shown to play an increasingly diverse role in bacterial physiology, yet much remains to be learned about their synthesis and catabolism. Here we used the model soil- and rhizosphere-dwelling organism Pseudomonas putida KT2440 to elaborate on the genomics and enzymology of d-amino acid metabolism. P. putida KT2440 catabolized the d-stereoisomers of lysine, phenylalanine, arginine, alanine, and hydroxyproline as the sole carbon and nitrogen sources. With the exception of phenylalanine, each of these amino acids was racemized by P. putida KT2440 enzymes. Three amino acid racemases were identified from a genomic screen, and the enzymes were further characterized in vitro. The putative biosynthetic alanine racemase Alr showed broad substrate specificity, exhibiting measurable racemase activity with 9 of the 19 chiral amino acids. Among these amino acids, activity was the highest with lysine, and the kcat/Km values with l- and d-lysine were 3 orders of magnitude greater than the kcat/Km values with l- and d-alanine. Conversely, the putative catabolic alanine racemase DadX showed narrow substrate specificity, clearly preferring only the alanine stereoisomers as the substrates. However, DadX did show 6- and 9-fold higher kcat/Km values than Alr with l- and d-alanine, respectively. The annotated proline racemase ProR of P. putida KT2440 showed negligible activity with either stereoisomer of the 19 chiral amino acids but exhibited strong epimerization activity with hydroxyproline as the substrate. Comparative genomic analysis revealed differences among pseudomonads with respect to alanine racemase genes that may point to different roles for these genes among closely related species.  相似文献   

16.
A key component in describing forest carbon (C) dynamics is the change in downed dead wood biomass through time. Specifically, there is a dearth of information regarding the residence time of downed woody debris (DWD), which may be reflected in the diversity of wood (for example, species, size, and stage of decay) and site attributes (for example, climate) across the study region of eastern US forests. The empirical assessment of DWD rate of decay and residence time is complicated by the decay process itself, as decomposing logs undergo not only a reduction in wood density over time but also reductions in biomass, shape, and size. Using DWD repeated measurements coupled with models to estimate durations in various stages of decay, estimates of DWD half-life (T HALF), residence time (T RES), and decay rate (k constants) were developed for 36 tree species common to eastern US forests. Results indicate that estimates for T HALF averaged 18 and 10 years for conifers and hardwoods, respectively. Species that exhibited shorter T HALF tended to display a shorter T RES and larger k constants. Averages of T RES ranged from 57 to 124 years for conifers and from 46 to 71 years for hardwoods, depending on the species and methodology for estimating DWD decomposition considered. Decay rate constants (k) increased with increasing temperature of climate zones and ranged from 0.024 to 0.040 for conifers and from 0.043 to 0.064 for hardwoods. These estimates could be incorporated into dynamic global vegetation models to elucidate the role of DWD in forest C dynamics.  相似文献   

17.
Here we performed structural and biochemical analyses on the TK2285 gene product, an uncharacterized protein annotated as a member of the ribokinase family, from the hyperthermophilic archaeon Thermococcus kodakarensis. The three-dimensional structure of the TK2285 protein resembled those of previously characterized members of the ribokinase family including ribokinase, adenosine kinase, and phosphofructokinase. Conserved residues characteristic of this protein family were located in a cleft of the TK2285 protein as in other members whose structures have been determined. We thus examined the kinase activity of the TK2285 protein toward various sugars recognized by well characterized ribokinase family members. Although activity with sugar phosphates and nucleosides was not detected, kinase activity was observed toward d-allose, d-lyxose, d-tagatose, d-talose, d-xylose, and d-xylulose. Kinetic analyses with the six sugar substrates revealed high Km values, suggesting that they were not the true physiological substrates. By examining activity toward amino sugars, sugar alcohols, and disaccharides, we found that the TK2285 protein exhibited prominent kinase activity toward myo-inositol. Kinetic analyses with myo-inositol revealed a greater kcat and much lower Km value than those obtained with the monosaccharides, resulting in over a 2,000-fold increase in kcat/Km values. TK2285 homologs are distributed among members of Thermococcales, and in most species, the gene is positioned close to a myo-inositol monophosphate synthase gene. Our results suggest the presence of a novel subfamily of the ribokinase family whose members are present in Archaea and recognize myo-inositol as a substrate.  相似文献   

18.
The RAS/RAF/MEK/ERK signal transduction cascade plays an important role in the regulation of critical cellular processes such as cell proliferation, migration, and differentiation. The up-regulation of this pathway can negatively affect cell homeostasis and is responsible for the development of various forms of cancer and inflammation processes. Therefore, there is a strong interest in pursuing drug programs targeting some of the enzymes involved in this pathway. In addition to the determination of Ki, Kd, IC50, and/or EC50, a more thorough kinetic analysis can provide useful information for the selection of the best lead series during the early stage of the drug discovery process. This study describes a medium-throughput fluorescent probe displacement assay for the rapid determination of the koff constant, residence time, and kinetic efficiency for ERK (extracellular signal-regulated kinase) inhibitors. Using this method, we have identified several inhibitors that we have subjected to further kinetic analysis by comparing koff constants determined for these time-dependent inhibitors using either the active or inactive form of ERK2.  相似文献   

19.
Factor VIIIa is comprised of A1, A2, and A3C1C2 subunits. Several lines of evidence have identified the A2 558-loop as interacting with factor IXa. The contributions of individual residues within this region to inter-protein affinity and cofactor activity were assessed following alanine scanning mutagenesis of residues 555–571 that border or are contained within the loop. Variants were expressed as isolated A2 domains in Sf9 cells using a baculovirus construct and purified to >90%. Two reconstitution assays were employed to determine affinity and activity parameters. The first assay reconstituted factor Xase using varying concentrations of A2 mutant and fixed levels of A1/A3C1C2 dimer purified from wild type (WT), baby hamster kidney cell-expressed factor VIII, factor IXa, and phospholipid vesicles to determine the inter-molecular Kd for A2. The second assay determined the Kd for A2 in factor VIIIa by reconstituting various A2 and fixed levels of A1/A3C1C2. Parameter values were determined by factor Xa generation assays. WT A2 expressed in insect cells yielded similar Kd and kcat values following reconstitution as WT A2 purified from baby hamster kidney cell-expressed factor VIII. All A2 variants exhibited modest if any increases in Kd values for factor VIIIa assembly. However, variants S558A, V559A, D560A, G563A, and I566A showed >9-fold increases in Kd for factor Xase assembly, implicating these residues in stabilizing A2 association with factor IXa. Furthermore, variants Y555A, V559A, D560A, G563A, I566A, and D569A showed >80% reduction in kcat for factor Xa generation. These results identify residues in the 558-loop critical to interaction with factor IXa in Xase.  相似文献   

20.
The addition of 10 mM KNO3 to the solution bathing the roots of young nitrogen-starved seedlings of Zea mays L. enhanced root water transfer within 15 h, compared with 10 mM KCl addition. The free exudation flux was 2.2–3.9 times higher in excised KNO3-treated roots than in KCl-treated ones. Cryo-osmometry data for xylem sap suggested that, compared with chloride, nitrate treatment increased the steady solute flux into the xylem, but did not modify the osmotic concentration of sap. Root growth was not significantly modified by nitrate within 15 h. Root hydraulic conductances were measured by using either hydrostatic-pressure or osmotic-gradient methods. During hydrostatic experiments, the conductance (kp), which is thought to refer mainly to the apoplasmic pathway, was 1.6 times larger in KNO3-than in KCl-treated plants. From experiments in which polyethylene glycol (PEG) 8000 was used as external osmolyte, osmotic conductances (ks) were found to be smaller by 5–20 times than kp for the two kinds of plants. The KCl-treated roots were characterized by a low ks which was the same for influx or efflux of water. By contrast, KNO3-treated roots exhibited two distinct conductances ks1 and ks2, indicating that influx of water was easier than efflux when the water flow was driven by the osmotic pressure gradient. Infiltration of roots with KNO3 solution supported the idea that nitrate might enhance the efficiency of the cell-to-cell pathway. The low ks value of KCl-treated roots and the existence of two contrasting ks values (ks1 and ks2) for KNO3-treated roots are discussed in terms of reversible closing of water channels.  相似文献   

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