When invasion biology meets taxonomy: <Emphasis Type="Italic">Clavelina oblonga</Emphasis> (Ascidiacea) is an old invader in the Mediterranean Sea

Taxonomic issues often confound the study of invasive species, which sometimes are unrecognized as introduced in newly colonized areas. Clavelina oblonga Herdman, 1880 is an abundant ascidian species along the southeastern coast of the United States and the Caribbean Sea. It was introduced into the eastern Atlantic and Brazil decades ago. In the Mediterranean Sea, a similar species had been described as C. phlegraea Salfi 1929 and reported from southern Italy and Corsica. In the last few years a species of Clavelina has proliferated in the embayments of the Ebro Delta (NW Mediterranean), a zone of active bivalve culture industry where it has smothered mussel spat, leading to economic loss. We here report the morphological and genetic identity of this species, synonymizing the Atlantic C. oblonga and the Mediterranean C. phlegraea (the latter therefore is a synonym of the former). Thus, C. oblonga has existed in the Mediterranean for over 80 years, but was known under a different name. We also found this species in natural habitats in the Iberian Atlantic coast close to the Strait of Gibraltar, raising concerns about an ongoing expansion. In order to obtain information relevant for management, we monitored growth, reproductive cycles and settlement patterns of this ascidian on bivalve cultures in the Ebro Delta. Its biological cycles were markedly seasonal, with peak abundance and reproduction during the warmest months, followed by regression during the cold season. The settlement period was short, mostly concentrated in a single month each year. Avoidance of mussel and oyster seeding during late summer and early autumn can readily reduce the damage caused by this species.     

First record of nakedband gaper <Emphasis Type="Italic">Champsodon nudivittis</Emphasis> (Osteichthyes: Champsodontidae) off the Syrian Coast (Eastern Mediterranean)

This paper reports the first record of nakedband gaper Champsodon nudivittis from the Syrian coast. This record confirms the occurrence of the species in the Levant Basin and its eastern extension range in he Mediterranean Sea. Additionally, this additional capture of C. nudivittis in the eastern Mediterranean supports that a sustainable population is at present probably established in the same Mediterranean region.     

First aerobiological study in Mediterranean part of Croatia (Dalmatia): pollen spectrum and seasonal dynamics in the air of Split

The aim of this study was to investigate aerobiological dynamics of pollen in the Mediterranean part of Croatia in the air of the city of Split. Pollen monitoring during the period from 2005 to 2013 was performed using a Hirst volumetric trap. Among the identified pollen of 50 taxa, 21 were allergenic. The average annual pollen index was 33,513. Three pollination seasons were established: early winter season dominated by tree pollen, spring–summer season dominated by herbaceous plants and summer–autumn season with lower amounts of Parietaria and Cupressaceae pollen. According to the abundance, the main taxa were: Cupressaceae, Parietaria/Urtica, Pinus, Quercus, Olea, Carpinus/Ostrya, Poaceae, Platanus and Ambrosia. The annual pollen index together with the daily maximum concentrations showed an upward trend for selected taxa during the study period. The highest monthly pollen index and the highest biodiversity were recorded in April and the lowest during the late autumn and winter months. The pollen calendar created for the city of Split confirmed Mediterranean features of the pollen spectrum. The longest pollen seasons were recorded for Cupressaceae, Parietaria/Urtica and Poaceae pollen types. The correlations between pollen concentrations and meteorological parameters were analyzed. The correlations between pollen concentrations and temperature were positive, while the humidity and the precipitation mostly showed negative influence.     

Ocean acidification responses in paralarval squid swimming behavior using a novel 3D tracking system

The study presents the biomass and spatial distribution of Sardinella aurita in the Libyan, Maltese and southern Sicily waters, estimated during four acoustic surveys in summer 2008 and 2010. Strong differences in terms of both spatial distribution and total biomass between years and areas were found, with higher total biomass in 2010 than in 2008 in both southern and northern areas of the central Mediterranean. Habitat suitability and changes in the spatial dynamics of round sardinella among areas and years are then explored in relation to total biomass variation and environmental factors. The area of presence of S. aurita increased in the Maltese and Sicilian waters in 2010 with respect to 2008, while most of the total biomass observed in the two years occupied the same proportion of the continental shelf in Libyan waters. The link between environmental conditions and S. aurita area of presence and aggregation was investigated by means of generalized additive models (GAM). The application of GAM singled out the key role of depth and temperature in driving higher round sardinella aggregations, as they were able to explain in both years about the 48% of total deviance in the case of strictly positive values. Favourable habitat for round sardinella was found in waters shallower than 60 m depths, with a clear peak around 40 m depth. Favourable temperature values were above 22°C for presence/absence case and above 24°C when GAM was applied on strictly positive values. Overall S. aurita biomass and distribution were discussed in the light of the classical models proposed to describe the fish spatial dynamics in relation to an increase in total biomass.     

Photosynthesis,stomatal conductance and terpene emission response to water availability in dry and mesic Mediterranean forests

Key message

Warmer summer conditions result in increased terpene emissions except under severe drought, in which case they strongly decrease.

Abstract

Water stress results in a reduction of the metabolism of plants and in a reorganization of their use of resources geared to survival. In the Mediterranean region, periods of drought accompanied by high temperatures and high irradiance occur in summer. Plants have developed various mechanisms to survive in these conditions by resisting, tolerating or preventing stress. We used three typical Mediterranean tree species in Israel, Pinus halepensis L., Quercus calliprinos and Quercus ithaburensis Webb, as models for studying some of these adaptive mechanisms. We measured their photosynthetic rates (A), stomatal conductance (g _s), and terpene emission rates during spring and summer in a geophysical gradient from extremely dry to mesic from Yatir (south, arid) to Birya (north, moist) with intermediate conditions in Solelim. A and g _s of P. halepensis were threefold higher in Birya than in Yatir where they remained very low both seasons. Quercus species presented 2–3-fold higher A and g _s but with much more variability between seasons, especially for Q. ithaburensis with A and g _s that decreased 10–30-fold from spring to summer. Terpene emission rates for pine were not different regionally in spring but they were 5–8-fold higher in Birya than in Yatir in summer (P < 0.05). Higher emissions were also observed in Solelim for the drought resistant Q. ithaburensis (P < 0.001) but not for Q. calliprinos. α-Pinene followed by limonene and 3-carene were the dominant terpenes. Warmer summer conditions result in increased Terpene emission rates except under severe drought, in which case they strongly decrease.

     

The dispersion characteristics of airborne pollen in the Shijiazhuang (China) urban area and its relationship with meteorological factors

In this study, a Tauber pollen trap was used in the urban area of Shijiazhuang to monitor continuously the outdoor air pollen from 2007 to 2011. The trap was emptied at regular intervals (typically 15 days). The results show that airborne pollen assemblages are generally similar each year among 2007–2011 and are responsive to the flowering times of plants, being dominated by pollen from woody plants in the spring and by pollen from herbaceous plants in summer and autumn. Two peak pollen influx periods, especially for the main allergenic pollen taxa, are seen, one between early March to early June and a second between late August to early October. During the four seasons, the main pollen taxa are Juglans, Artemisia, Platanus, Populus, Chenopodiaceae, Urtica + Humulus, Rosaceae, Pinus, Poaceae, Cereals, Quercus, and Betula, and all taxa other than Rosaceae were confirmed by relevant studies to be allergenic pollen taxa. RDA analysis of pollen influx and meteorological factors shows that in spring, temperature and humidity have significant effects on the pollen influx of woody plants; in summer, humidity and precipitation have significant negative effects on pollen influx of herbaceous plants; in autumn, temperature, water vapor pressure, and precipitation have a significant positive influence on herbaceous pollen influx; in winter, there were no significant correlations between airborne pollen influx and meteorological factors. The results reveal the dispersion patterns of airborne pollen and provide an important reference to appropriate construction of urban green systems and the reliable reduction in regional pollinosis.     

The fossil fallow deer <Emphasis Type="Italic">Dama geiselana</Emphasis> (Cervidae,Mammalia, upgrade to species level) in the context of migration and local extinctions of fallow deer in the Late and Middle Pleistocene in Europe

The fossil fallow deer Dama dama geiselana Pfeiffer from Neumark-Nord (Saxony-Anhalt, Germany) is upgraded to species level and discussed within the current taxonomy of recent and fossil fallow deer. Typical antler and skeletal characteristics are discussed in comparison with the recent Dama dama, Dama mesopotamica and the fossil species Dama clactoniana, Dama nestii and Dama rhenana. The phylogenetic relationship of fallow deer can be traced back to the Late Pliocene and distinguished morphologically from Cervus elaphus, Cervus nippon and Axis axis. Late and Middle Pleistocene finds from Germany are presented and discussed in the context of the finds from the Mediterranean region and Great Britain. The differences in antler morphology and bone dimensions in West German and North-East German fallow deer from the Late Pleistocene support the hypothesis of different immigration channels, on the one hand from the eastern Mediterranean along the Danube and on the other from the west along the Rhone and Rhine. In the Middle Pleistocene, Dama mesopotamica is considered as the typical fallow deer in the eastern Mediterranean, while in the west, Dama clactoniana is widespread. The hypothesis of immigration from the eastern Mediterranean is supported by the fossil record in Germany with the fallow deer from Edesheim. Conversely, Dama geiselana probably influenced East Mediterranean populations. Special tooth characteristics of Dama geiselana occur with lower frequency in Dama mesopotamica. In the Bronze Age, the fallow deer from Kastanas (Macedonia) shares antler characteristics, the high frequency of specific features of the scapula, and the astragalus with Dama geiselana. A relict population of Dama geiselana probably reached the Eastern Mediterranean at the beginning of the last cold stage.     

Airborne pollen in the El-Hadjar town (Algeria NE)

The diversity of airborne pollen grains in El-Hadjar town (northeast Algeria) was measured for 1 year, from July 1, 2012 to June 30, 2013, by means of the gravimetric method using Durham apparatus. The total number of pollen grains/cm² was calculated from slides that were changed daily. This aerobiological study documented the air concentration of pollen from 50 taxa, where 28 belonged to arboreal and 22 to non-arboreal taxa. The percentage of pollen from arboreal and non-arboreal taxa was 56 and 44 %, respectively. From the list, the major collected taxa causing allergy in humans dominant in the Mediterranean area were Cupressaceae (14.86 %), Olea sp. (7.18 %), Casuarina sp. (6.44 %), and Fraxinus sp. (3.83 %) among arboreal plants, whereas for the non-arboreal plants Poaceae (23.20 %), Mercurialis sp. (12.58 %), Plantago sp. (1.69 %), Urticaceae (0.95 %), and Chenopodiaceae (0.85 %). The highest pollen counts occurred in the period from February to April. The pollen calendar for the region presented in this paper may be a useful tool for allergologists and botanical awareness.     

An aeropalynological survey in the city of Van,a high altitudinal region,East Anatolia-Turkey

Pollen concentrations in the atmosphere of Van city has been monitored for two consecutive years (2010–2011). This was the first detailed aeropalynological study for the elevated East Anatolia Region of Turkey. The sampling was performed by Hirst-type volumetric sampler, and pollen grains of 35 taxa were identified. The main pollen producers of the pollen flora were recorded as: Poaceae (20.94 %), Cupressaceae (10.53 %), Fraxinus (8.56 %), Chenopodiaceae/Amaranthaceae (7.77 %), Populus (7.75 %), Quercus (6.70 %), Platanus (6.68 %), Morus (5.57 %), Plantago (3.03 %). The pollen spectrum reflected the floristic diversity of the region, and the highest pollen concentration was recorded in April. There were a great percentage of allergenic taxa found in the city atmosphere, otherwise many of them scored under threshold values for risk of pollinosis. Statistical analyses were performed for correlating daily pollen concentrations of dominated pollen types concurrent with the data of meteorological parameters in MPS periods and number of significant correlations found. In addition, comparing 2-year data in terms of pollen concentrations and meteorological factors in MPS durations, many variables were found explanatory and concordant with the data. MPS starting dates of many plant taxa were found nearly a month later compared with western sites and lower altitudes of the country as well as Mediterranean countries; this case is mostly thought the ecological factors of the study area which directly affects the plant growth about the timing.     

Dispersal of <Emphasis Type="Italic">Fusarium</Emphasis> spp. by rainwater and pathogenicity on four plant species

Research focused on the occurrence of Fusarium spp. in atmospheric dust or rainwater is not common. Preliminary studies with four sampling dates in 2007 revealed that several species of Fusarium may also be conveyed by rainwater. In order to determine the regular presence of Fusarium spp. in rainfall water, samples were systematically collected for a year (from October 2009 to October 2010) in three points on the Mediterranean coast of the province of Granada (Spain) 10-km distance between them. Throughout the year of sampling, a total of 179 rainwater samples were collected during every significant rainfall event. Eight different Fusarium species were isolated from the rainwater samples: F. oxysporum (32 %), F. proliferatum (26 %) and F. equiseti (20 %) coincide with previous studies, while F. dimerum (3 %), F. semitectum (4.7 %), F. solani (8 %), F. avenaceum (0.5 %) and F. chlamydosporum (3.7 %) were isolated for the first time from rainwater. Results were consistent with previous surveys conducted 100 km away from the sampling sites. Inoculation of 39 different isolates from five different Fusarium species showed pathogenicity on plants. Disease severity differed depending on the inoculated plant species, which means that rain water can be an effective vector to transport new pathogens into new cultivated areas. This work reveals some epidemiological aspects of Fusarium genus in natural environments. Some of the isolated Fusarium spp. are potential mycotoxin producers, such as zearalenone, fumonisin, moniliformin or nivalenol.     

Fossil Giraffidae (Mammalia,Artiodactyla) from Lee Adoyta,Ledi-Geraru,and Late Pliocene Dietary Evolution in Giraffids from the Lower Awash Valley,Ethiopia

The giraffid fossils recovered from ~ 2.8–2.6 million year old (Ma) sediments from Lee Adoyta, Ledi-Geraru, Ethiopia, are described here. Sivatherium maurusium and Giraffa cf. G. gracilis are the two identified taxa, with the former being more abundant than the latter. We interpret this skew of relative abundance to be of paleoenvironmental significance, as Sivatherium is rare and Giraffa is common in the adjacent, but older sediments of the Hadar Formation at Hadar (~ 3.4 to 2.95 Ma), which was characterized by wooded and well-watered habitats through most of its sequence. Stable carbon isotope analyses show that Giraffa remained an obligate browser throughout the lower Awash Valley (LAV) sequence while Sivatherium underwent a dietary transition from a browser in the Hadar Formation to a grazer at Lee Adoyta. This dietary shift in Sivatherium reflects local environmental change through time in the LAV as open habitats spread during the late Pliocene. A compilation of isotopic data from other sites in eastern Africa shows that the LAV dietary shift in Sivatherium occurred roughly one million years earlier than in the Turkana Basin, Kenya, reflecting a spatiotemporally staggered expansion of C₄ vegetation across eastern Africa.     

New Occurrences of Flying Fishes <Emphasis Type="Italic">Cheilopogon melanurus</Emphasis> and <Emphasis Type="Italic">C. heterurus</Emphasis> (Exocoetidae) in the North Central Atlantic and Eastern Part of the Mediterranean Sea

Cheilopogon melanurus, found for the first time in the central part of the North Atlantic (26°34′6 N 33°55′2 W), and C. heterurus from the eastern part of the Mediterranean Sea (Mahmutlar, Alanya, Turkey) are described. C. heterurus is widely distributed in the eastern part of the Mediterranean Sea occurring here in all seasons.     

Water mite (Acari: Hydrachnidia) diversity and distribution in undisturbed Dinaric karst springs

Large undisturbed karst springs in the Dinaric region are particularly interesting and extremely valuable and rare ecosystems, housing diverse and yet undiscovered water mite species. The complex life history traits of water mites include several life stages that are interconnected with other freshwater arthropod groups, making them important components of freshwater fauna. This study examined whether the differences in water mite assemblages between Mediterranean and alpine karst springs were driven by seasonal and/or regional changes in environmental conditions. The first ecological data on water mite dynamics and distribution in the Dinaric region of Croatia are presented. Water mites were represented by 11 taxa, decreasing in taxon richness from alpine to Mediterranean springs. Spatial patterns of water mite assemblages at the regional scale were best explained by water temperature, dissolved oxygen and water velocity. Pseudotorrenticola rhynchota and Oxus setosus were exclusively found in springs with higher water temperature and velocity, whereas the genera Aturus sp. and Woolastookia rotundifrons were exclusively recorded in the alpine springs, where oxygen concentrations were significantly higher. Atractides sp., Lebertia sp. and Sperchon sp. were recorded in most springs. Water mite abundances had a summer peak in the Mediterranean region, whereas two smaller peaks were observed in the spring and fall in the alpine region. Regional differences in the seasonality of water mite abundance were most likely patterned by the emergence of insect crenofauna.     

How Many Species,Taxa, or Lineages of <Emphasis Type="Italic">Cebus albifrons</Emphasis> (Platyrrhini,Primates) Inhabit Ecuador? Insights from Mitogenomics

A first step in protecting groups of similarly structured organisms is to place them into discrete taxa. Molecular genetics and phylogeny allow us to rebuild the evolutionary history of these taxa. The Neotropics has roughly 34% of Earth’s primate diversity. However, the systematics of Neotropical primates is complex and controversial. The untufted (gracile) capuchins are traditionally classified as four species: Cebus albifrons, C. capucinus, C. olivaceus, and C. kaapori. Of these, Cebus albifrons has confusing intraspecific systematics with a large number of fragmented and isolated populations throughout its geographical distribution, and up to 13 morphological subspecies. The number of taxa of this species in Ecuador, some areas of northern and eastern Colombia, and Trinidad Island is particularly debated. Primatologists have defined two taxa of C. albifrons in Ecuador: a trans-Andean population: C. a. aequatorialis (or C. aequatorialis) and a cis-Andean population: C. a. yuracus (or C. yuracus). To better understand the systematics of this species, we sequenced the mitogenomes of 136 Cebus albifrons, two Cebus olivaceus, and one Cebus kaapori. Our phylogenetic analyses revealed at least nine significantly different haplogroups of C. albifrons in Ecuador, four of which contained exemplars from both the trans-Andean Pacific Ecuador and the cis-Andean Ecuadorian Amazon. The splits of these Ecuadorian haplogroups, and the initial diversification within them, occurred during the Middle to Late Pliocene and the beginning of the Pleistocene. Individuals we analyzed from Vichada Department in eastern Colombia were genetically distinct from other groups of C. albifrons, agreeing with morphological studies which consider it a full subspecies (C. a. albifrons). Phylogenetic analyses showed two different gracile capuchin taxa on Trinidad Island: C. a. trininatis and C. o. brunneus. We conclude that a large portion of the gracile capuchin taxa form a unique species with a complex of populations and subspecies. The species has conserved its reproductive integrity by repeated episodes of reticulation and high levels of gene flow.     

The sedimentary facies of <Emphasis Type="Italic">Posidonia oceanica</Emphasis> seagrass meadows from the central Mediterranean Sea

Sedimentary facies of seven Posidonia oceanica meadows of western Mediterranean Sea were investigated. Five meadows are located in the Tyrrhenian coast, two are placed in the western coast of Sardinia and Corsica. These meadows develop on soft and hard substrates, often forming “mattes”, in areas characterized by different oceanography, morphology, and terrigenous inputs produced by coastal erosion and fluvial runoff. A total of five sedimentary facies have been recognized ranging from pure terrigenous to bioclastic: terrigenous sand to gravelly sand, bioclastic sands, skeletal gravelly sands, mixed siliciclastic–carbonate sands, well to moderately sorted skeletal siliciclastic sands. All of the sedimentary facies associated with P. oceanica are in the sand grain size. The gravelly fraction is generally subordinated and variable, whereas the muddy fraction is generally low. The very low frequencies of the muddy fraction can be attributed to re-suspension processes and to the lack of carbonate mud production. The rate of epiphytic carbonate production obtained by two of the investigated meadows averages 400 g m^?2 year^?1. This value is in the range of temperate Mediterranean as well as of tropical and subtropical seagrasses. The epiphytic carbonate production plus the calcareous biota living on seagrass substrate contributes to form mixed siliciclastic–carbonate sediments of the nearshore environment of the Mediterranean. Lastly, the carbonate production associated with seagrass was derived by biota belonging to the heterozoan assemblage, where aphotic organisms are dominant, together with oligophotic biota such as coralline algae and symbiont-bearing foraminifera. Consequently, in the well-illuminated seagrass settings, the prevalent skeletal assemblages is represented by the heterozoan association while the components of the photozoan assemblages are absent or subordinate. This a key point for the paleoenvironmental reconstruction of the photic zone in the fossil record. Because the skeletal components of many seagrass dwellers greatly contribute to the carbonate sediment production of photic shallow-water environments, the seagrass meadows became substantial places of carbonate production and C (organic and inorganic) sequestration during the Cenozoic.     

Evidence for diversification of <Emphasis Type="Italic">Calophyllum</Emphasis> L. (Calophyllaceae) in the Neogene Siwalik forests of eastern Himalaya

Here, we report fossil leaves, woods, and pollen grains comparable to Calophyllum L. (mainly to Calophyllum inophyllum L. and Calophyllum polyanthum Wall. ex Choisy) of Calophyllaceae from the upper (Kimin Formation, late Pliocene-early Pleistocene), middle (Subansiri Formation, Pliocene) Siwalik sediments of the Arunachal sub-Himalaya, and lower (Gish Clay Formation of Sevok Group; middle to late Miocene) Siwalik sediments of the Darjeeling foothills, eastern Himalaya. Their presence indicates a warm and humid tropical environment in the region during the period of Siwalik sedimentation. Considering all records of Calophyllum, it is suggested that Calophyllum was a frequent forest element throughout the period of Siwalik sedimentation during the Neogene (Miocene time). At present, C. polyanthum grows in the eastern Himalaya, but C. inophyllum is totally absent from north-eastern regions suggesting differential adaptability of these taxa to changing ecoclimatic conditions. Distinct climate change in the area, possibly related to the Himalayan Orogeny during Miocene–Pleistocene times, might have caused the disappearance of C. inophyllum from the entire eastern Himalaya and north-east Indian plains and a move to littoral/coastal and swampy forests of India and other adjoining south-east Asian regions, Polynesia, and the east coast of Africa. The past global distribution of Calophyllum is also discussed, and it is suggested that India may have been its primary centre of origin. This is the first time Cenozoic fossil leaves Calophyllum siwalikum Khan, R.A.Spicer & Bera, sp. nov. comparable to C. inophyllum are described using the both macro- and micromorphological characters.     

Conservation genetics of the short-beaked common dolphin (<Emphasis Type="Italic">Delphinus delphis</Emphasis>) in the Mediterranean Sea and in the eastern North Atlantic Ocean

Mediterranean Sea common dolphins have recently been listed as ‘endangered’ in the IUCN Red list, due to their reported decline since the middle of the 20th century. However, little is know about the number or distribution of populations in this region. We analysed 118 samples from the Black Sea, Mediterranean Sea and eastern North Atlantic at nine microsatellite nuclear loci and for 428 bps of the mtDNA control region. We found small but significant population differentiation across the basin between the eastern and the western Mediterranean populations at both nuclear and mtDNA markers (microsatellite F _ST = 0.052, mtDNA F _ST = 0.107, P values ≤ 0.001). This matched the differential distribution and habitat use patterns exhibited by this species in the eastern and the western parts of the Mediterranean Sea. The assignment test of a small number of samples from the central Mediterranean could not exclude further population structure in the central area of the basin. No significant genetic differentiation at either marker was observed among the eastern north Atlantic populations, though the Alboran population (inhabiting the Mediterranean waters immediately adjacent the Atlantic ocean) showed significant mtDNA genetic differentiation compared to the Atlantic populations. Directional estimates of gene flow suggested movement of females out of the Mediterranean, which may be relevant to the population decline. Phylogenetic analysis suggested that the observed population structure evolved recently.     

Photosynthetic activity of the phytoplankton in the reservoirs of the Volga River

The parameters of the photosynthetic activity per unit of the phytoplankton biomass have been studied for the reservoirs of the Volga River. The wide range of variability is accompanied by most of the values of A/B ratio laying within 0.5–3 mg O₂/(mg · day); the P/B ratio in the photic layer varies as 0.5–3 day^–1 and in the whole water column varies as 1 day^-1. The maximal values have been observed for the reservoirs located in the Upper Volga River. The turnover period of the phytoplankton biomass in the photic zone of the studied reservoirs was 0.2–1.6 day, or in2.1–3.8 times higher than for the whole water column from the surface down to the bottom. The seasonal variability of the A/B and P/B ratios in each reservoir had more pronounced individual variability than the variability observed for the whole cascade during the summer season. The A/B and P/B ratios decrease significantly in the oligotrophic waters to the eutrophic; these ratios have an indicator value.     

Gemcabene,a first-in-class lipid-lowering agent in late-stage development,down-regulates acute-phase C-reactive protein via C/EBP-δ-mediated transcriptional mechanism

The marked clinical and genetic heterogeneity seen in hypertrophic (HCM) and dilated cardiomyopathies (DCM) suggests involvement of disease modifiers and environmental factors in the pathophysiology of these diseases. In the current study, we examined association of single nucleotide polymorphisms (SNPs) of three candidate genes, ACE2 (rs6632677), TNNI3K (rs49812611) and CALM3 (rs13477425) with clinical phenotypes of HCM and DCM patients of North Indian ethnicity. Prevalence of ACE2 (7160726 C>G) variant genotypes (CG and GG) was significantly higher in DCM subjects as compared to controls. Prevalence of TNNI3K (3784 C>T) and CALM3 (?34T>A) variant homozygous genotype were significantly higher in HCM and DCM subjects as compared to controls. DCM patients with CT genotype showed significant decrease in LVEF as compared to CC genotype (p < 0.03). There was significant gene–gene interaction between these SNPs and three-way SNP combination of ACE2 C>G, TNN13K C>T, CALM3 A>T gene variants and was associated with high risk of HCM and DCM. Presence of ACE2 (7160726 C>G) and CALM3 (?34T>A) variant genotypes in HCM Patients with mutations (sarcomeric or non sarcomeric genes) was associated with increased mean septal thickness, further suggesting a role of these gene variants in modifying disease phenotype. Our results suggest that ACE2, TNNI3K and CALM3 polymorphisms are associated with increased risk of HCM and DCM and may act as disease modifiers of these diseases.