Adaptations of microbial communities and dissolved organics to seasonal pressures in a mesotrophic coastal Mediterranean lake

In lake ecosystems, changes in eukaryotic and prokaryotic microbes and the concentration and availability of dissolved organic matter (DOM) produced within or supplied to the system by allochthonous sources are components that characterize complex processes in the microbial loop. We address seasonal changes of microbial communities and DOM in the largest Croatian lake, Vrana. This shallow lake is connected to the Adriatic Sea and is impacted by agricultural activity. Microbial community and DOM structure were driven by several environmental stressors, including drought, seawater intrusion and heavy precipitation events. Bacterial composition of different lifestyles (free-living and particle-associated) differed and only a part of the particle-associated bacteria correlated with microbial eukaryotes. Oscillations of cyanobacterial relative abundance along with chlorophyll a revealed a high primary production season characterized by increased levels of autochthonous DOM that promoted bacterial processes of organic matter degradation. From our results, we infer that in coastal freshwater lakes dependent on precipitation-evaporation balance, prolonged dry season coupled with heavy irrigation impact microbial communities at different trophic levels even if salinity increases only slightly and allochthonous DOM inputs decrease. These pressures, if applied more frequently or at higher concentrations, could have the potential to overturn the trophic state of the lake.     

The distribution of macroinvertebrate communities in two Portuguese rivers

SUMMARY. 1. The distribution of macroinvertebrates in two chemically different rivers of Central Portugal (Soure and Alva) was analysed.
2. In the Soure, a lowland, alkaline river (mean values for alkalinity, conductivity and pH, 101 mg I⁻¹ CaCO₃, 255 μS cm⁻¹ and 7.8, respectively), a relatively high number of individuals and low diversity (mean H '= 2.27) was found. There was considerable temporal variation in the number of individuals present.
3. In the Alva, a highland, acidic river (mean values for alkalinity, conductivity and pH. 4.8 mg 1⁻¹ CaCO₃, 22 μ S cm⁻¹ and 5.7, respectively), diversity was higher (mean H '=3.41). There were large temporal changes in the number of species present, but not in the number of individuals.
4. Similarity indices and cluster analysis identified six site-types and seventeen groups of co-occurring taxa. Some of the taxonomic groups were characteristic of one or more sites, hut others had no strong association with a particular site. Although the rivers differed considerably in terms of physico-chemistry, communities in the upper sections of the two rivers were more similar to each other, than to other communities in the same river. The way the samples of both rivers were clustered seems to indicate that community structure was influenced by factors associated with (1) within river longitudinal variation (e.g. substrate grain size), (2) water chemistry, and (3) seasonal variations (e.g. temperature, flow).     

Flow intermittency decreases nestedness and specialisation of diatom communities in Mediterranean rivers

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Stromatolitic communities in Mediterranean streams: adaptations to a changing environment

A stromatolitic microbial mat extensively covers La Solana streambed, a calcareous Mediterranean stream. This stromatolite shows remarkable biological and physiological diversity. It is mainly composed by cyanobacteria, with Rivularia and Schizothrix as the most abundant taxa. The stromatolite is photosynthetically adaptated to the high irradiances reaching the streambed. Photosynthetically active chlorophyll is present even in the lowest layers of the stromatolite, indicating the presence of well-preserved cyanobacteria in that part. Diffusion of gases and nutrients within the stromatolite can be possible because of the high porosity of the crust. It has been experimentally established that the stromatolite recovers heterotrophic and autotrophic activities in a few hours, after being desiccated for long periods. Recovery after desiccation is indicative of the high resilience of this community to environmental extremes, which are common in Mediterranean climatic regimes. The stromatolitic community is adapted to nutrient limitation, both to low availability of inorganic phosphorus and nitrogen (that constrain growth of primary producers), and to low dissolved organic carbon (mainly affecting heterotrophs). Stromatolitic heterotrophs mainly rely on the organic carbon stored in the crust as the main organic carbon source. These strategies are the direct response of the stromatolite to oligotrophy, and justify the restricted occurrence in stream systems affected by organic pollution.     

Dry-season changes in macroinvertebrate assemblages of highly seasonal rivers: responses to low flow, no flow and antecedent hydrology

Highly seasonal rivers can experience extended low flow, and often dry, periods. Macroinvertebrate and flow data were used to explore hypotheses on the effects of antecedent hydrology and the low-flow, dry-season period on macroinvertebrate assemblages in northern Australia. Composition differed between early and late dry seasons. Taxa were more sensitive to water quality and more rheophilous in the early dry season when their habitats were lotic than when habitats later became lentic. As flow magnitudes in the antecedent dry season and on the sampling day increased, the habitats became more oxygenated and, in turn, macroinvertebrate richness increased. Higher wet-season flow magnitudes, flow variability and rates of fall were correlated with lower richness in the following dry season. Alteration of the flow-disturbance regime that increases the likelihood of flow cessation in macroinvertebrate habitats, or extends the duration of the dry season beyond that previously experienced in these highly seasonal systems, may alter the resistance and resilience of assemblages such that the seasonal decline and recovery of biodiversity may no longer be so reliable. Given the projected increase in low-flow incidence in many regions of the world, future research needs to examine the effects of reduced flow, flow cessation and stream drying as multiple, interacting stressors on stream biota.     

Structure and seasonal dynamics of hyporheic zone microbial communities in free-stone rivers of the estern United States

The hyporheic zone of a river is characterized by being nonphotic, exhibiting chemical/redox gradients, and having a heterotrophic food web based on the consumption of organic carbon entrained from surface waters. Hyporheic microbial communities constitute the base of food webs in these environments and are important for maintaining a functioning lotic ecosystem. While microbial communities of rivers dominated by fine-grained sediments are relatively well studied, little is known about the structure and seasonal dynamics of microbial communities inhabiting the predominantly gravel and cobble hyporheic zones of rivers of the western United States. Here, we present the first molecular analysis of hyporheic microbial communities of three different stream types (based on mean base discharge, substratum type, and drainage area), in Montana. Utilizing 16S rDNA phylogeny, DGGE pattern analysis, and qPCR, we have analyzed the prokaryotic communities living on the 1.7 to 2.36 mm grain-size fraction of hyporheic sediments from three separate riffles in each stream. DGGE analysis showed clear seasonal community patterns, indicated similar community composition between different riffles within a stream (95.6–96.6% similarity), and allowed differentiation between communities in different streams. Each river supported a unique complement of species; however, several phylogenetic groups were conserved between all three streams including Pseudomonads and members of the genera Aquabacterium, Rhodoferax, Hyphomicrobium, and Pirellula. Each group showed pronounced seasonal trends in abundance, with peaks during the Fall. The Hyphomicrobium group was numerically dominant throughout the year in all three streams. This work provides a framework for investigating the effects of various environmental factors and anthropogenic effects on microbial communities inhabiting the hyporheic zone.     

An integrative systematic approach to species diversity and distribution in the genus Mesophyllum (Corallinales,Rhodophyta) in Atlantic and Mediterranean Europe

For the first time, a comprehensive assessment of Mesophyllum species diversity and their distribution in Atlantic Europe and the Mediterranean Sea is presented based on molecular (COI-5P, psbA) and morphological data. The distribution ranges were redefined for the four species collected in this study: M. alternans, M. expansum, M. macroblastum and M. sphaericum. Mesophyllum sphaericum, which was previously known only from a single maerl bed in Galicia (NW Spain), is reported from the Mediterranean Sea. The known range of M. expansum (Mediterranean and Macaronesia) was extended to the Atlantic Iberian Peninsula. The occurrence of M. alternans was confirmed along the Atlantic French coast south to Algarve (southern Portugal). Mesophyllum lichenoides was only recorded from the Atlantic, whereas M. macroblastum appears to be restricted to the Mediterranean Sea. A positive correlation was observed between maximum Sea Surface Temperature (SSTmax) and the depth at which M. expansum was collected, suggesting that this species may compensate for higher SST by growing in deeper habitats where the temperature is lower. The latter indicates that geographic shifts in the distribution of coastal species as a result of global warming can possibly be mitigated by changes in the depth profile at which these species occur. Mesophyllum expansum, an important builder of Mediterranean coralligenous habitats, may be a good target species to assess its response to climate change.     

Zoobenthos communities and their seasonal dynamics in nonfreezing springs of Baikal region

The faunal composition, structure of the zoobenthos communities, and seasonal changes in two springs in the south of Irkutsk area are investigated. Both springs have the water temperature 4–5°C all year round. The fauna consists of widely distributed hydrobionts, crenobionts, stygobionts, and near-water organisms. Arctic relicts and elements of the Lake Baikal fauna are found. In macroinvertebrate communities, chironomid larvae dominate (by abundance and biomass), as do oligochaetes (by abundance). The lowest quantitative parameters are recorded in autumn-winter, and the highest parameters, in spring (March–April). Then they abruptly decline owing to emergence of amphibiotic insects. The structure of spring communities has regional specificity. By biomass of macrozoobenthos, the springs are comparable with mesotrophic and even eutrophic lakes.     

A mathematical approach to spatial distribution and temporal succession in plant communities

The Volterra equations which represent competitions between two species are utilized to examine the phenomenon of boundary formation between two species of plants. The set of stable stationary points for these equations is determined and is illustrated in a product space of parameters and dynamical variables. The stages of boundary appearance and succession are visualized by considering slow changes of the parameters as functions of time and space.     

Diversity of macrophyte communities and their relationship to water quality in different types of lowland rivers in Poland

The aim of the study was to verify botanical and ecological traits of river typology based on macrophytes. We compared diversities of macrophyte communities in different river types and their relationship to water quality. The 240 surveyed rivers were situated in the central-west of Poland in a lowland area. Species compositional similarities were analysed using the Jaccard index. The macrophyte matrix was classified into four groups: Large rivers (LR), Sandy rivers (SaR), Stony rivers (StR) and Organic rivers (OR). The highest level of homogeneity was found for LR, followed by OR, StR and SaR. The greatest differences in species composition were found between LR and StR. Variabilities of indices (species richness, Shannon, Simpson and Pielou indices, and total cover) confirmed the specific diversity patterns in the four types of rivers. All metrics based on relative abundance were strongly correlated with each other, and they were never correlated with water quality. The total covers of LR and OR as well as species richness of LR show some correlation with water quality. The total cover was correlated with water quality in OR and LR. The communities with the highest species richness were related with OR.     

A dynamical model of communities and a new species-abundance distribution

It is known to many field biologists that biosurveys of natural communities tend to produce a J-shaped curve when the numbers of species are plotted against abundance. In other words, when the number of species of abundance k is plotted against k (running from 1 to some large number), the resulting distribution peaks at the lowest abundance, then forms a concave ramp as it approaches zero at the far end of the abundance axis. Does this distribution represent a single formula operating behind the scenes, or does it represent several formulas, appropriate for different types of community? Or does it represent no particular formula at all? The research reported here has three components: (1) The analysis of a new dynamical system that simulates multispecies communities (producing J-curves in the process) and the derivation of the "logistic-J" distribution, as the underlying community equilibrium curve; (2) the summary of a general theory of sampling as a bridge between natural communities and samples of them; (3) the evaluation of extant proposals for species-abundance distributions by application of a general theory of sampling or by cross-comparison via 100 biosurveys randomly selected from the literature.     

The spatial distribution of soils across Europe: A fractal approach

In this work we investigate the applicability of fractal modeling to the soil surface system in Europe, as described by the European Soil Database (V2.0) and the soil classification of the World Reference Base [FAO, 1999. World Reference Base for Soil Resources. ISSS–ISRIC–FAO, Rome, World Soil Resources Report No. 84]. Firstly, we observe the power law patterns of the distribution of pedotaxa as well as their pedorichness–area relationships. After this, we consider the 45 most abundant soils that cover 92% of the surface of Europe and estimate the box-counting fractal dimension of the areas covered by each of the pedotaxa within three orders of magnitude. Our analysis shows a remarkable scaling behavior of soil distribution and strongly suggests the fractal nature of pedotaxa distribution across Europe. These findings lead us to propose that considering the pedotaxa fractal dimension could play an important role in the analysis of the complexity of European soil systems.     

Geographic, seasonal and bathymetric distribution of demersal fish species in the eastern Mediterranean

The distributional abundance of three demersal fish species, Merluccius merluccius, Mullus barbatus and Lophius budegassa, was studied as a function of sampling season, bathymetry and geographic area. Data were collected during research trawl surveys in the Aegean and Ionian seas under the same sampling scheme, thereby allowing comparisons to be made on the mean regional densities in numbers and biomass of these three commercially important species in Greek waters. Results indicated that European hake, M. merluccius, demonstrated a wide bathymetric and geographic distribution, with specimens encountered in all regions between 20 and 500 m depth, although density was found to be highest usually between 101 and 200 m. The mean regional density of hake was observed to vary seasonally, being higher mainly in winter. Red mullet, M. barbatus, was distributed in shallow water depths (<100 m) throughout the Greek seas, particularly in the northern part of the Aegean Sea. Abundance of this species steadily decreased with increasing depth. The geographic distribution of anglerfish, L. budegassa, was found to be restricted to the central and northern part of the Aegean Sea, with the highest mean densities encountered in the Thermaikos Gulf and in intermediate water depths between 101 and 200 m. Spatial patterns of observed density are assumed to be attributed mainly to prevailing topographic and hydrographic conditions and related biological productivity levels.     

The lentic and lotic characteristics of habitats determine the distribution of benthic macroinvertebrates in Mediterranean rivers

1. The importance of flow‐related factors to benthic organisms, as well as the role of habitat conditions in shaping aquatic communities during low‐flow periods, have been recognised. Despite this, the preferences of macroinvertebrates to the ratio of lentic to lotic habitats at the reach scale have not been accurately quantified in most instances.
2. Aquatic invertebrates and habitat features in a range of temporary rivers in Sardinia were investigated. The investigation focused on the flow‐related characteristics that contribute to defining the lentic–lotic condition of the river reaches. The relation of habitat features to benthic taxa distributions was assessed using multidimensional scaling. The main aim of the paper was to quantify the responses of taxa to the different lentic and lotic habitat conditions by applying hierarchical logistic regressions. Finally, taxon optima were aligned along the lentic–lotic gradient and the responses of different taxonomic groups compared.
3. Unbroken waves and imperceptible flow were correlated with benthic taxa variability, suggesting local hydraulics and turbulence have a major role in regulating community composition. The overall lentic–lotic character of the river reaches was also clearly related to the benthic taxa distribution. More than 80% of taxa were significantly related to the lentic–lotic gradient, and an asymmetrical response curve was the predominant model.
4. Benthic groups showed taxon optima clustered in different ranges of the lentic–lotic gradient. Odonata, Coleoptera, Hemiptera, and Mollusca preferred clearly lentic conditions. Diptera mainly ranged on the lotic side of the gradient, while Trichoptera were relatively uniformly distributed across the gradient. Ephemeroptera taxa clustered in intermediate lentic–lotic conditions, with two species preferring extremely lentic habitats. In general, optima converged at intermediate and extremely lentic conditions, presumably due, respectively, to the coexistence of different lentic and lotic features and to the highly diverse environmental characteristics under extremely lentic situations.
5. These results support the conclusion that dissimilar ecological factors act on benthic taxa along the lentic–lotic range and species favouring different lentic–lotic conditions are subjected to pressures of different nature. This should not be ignored when defining species preferences and studying community structure or relationships between species in Mediterranean rivers, which cyclically vary their habitat composition. In addition, the uneven distribution of optima of different groups along the lentic–lotic gradient might affect macroinvertebrate metrics when assessing ecological status or establishing reference conditions under variable climatic conditions.

     

Microbial communities of the Mediterranean rocky shore: ecology and biotechnological potential of the sea-land transition

Microbial communities from harsh environments hold great promise as sources of biotechnologically relevant strains and compounds. In the present work, we have characterized the microorganisms from the supralittoral and splash zone in three different rocky locations of the Western Mediterranean coast, a tough environment characterized by high levels of irradiation and large temperature and salinity fluctuations. We have retrieved a complete view of the ecology and functional aspects of these communities and assessed the biotechnological potential of the cultivable microorganisms. All three locations displayed very similar taxonomic profiles, with the genus Rubrobacter and the families Xenococcaceae, Flammeovirgaceae, Phyllobacteriaceae, Rhodobacteraceae and Trueperaceae being the most abundant taxa; and Ascomycota and halotolerant archaea as members of the eukaryotic and archaeal community respectively. In parallel, the culture-dependent approach yielded a 100-isolates collection, out of which 12 displayed high antioxidant activities, as evidenced by two in vitro (hydrogen peroxide and DPPH) and confirmed in vivo with Caenorhabditis elegans assays, in which two isolates, CR22 and CR24, resulted in extended survival rates of the nematodes. This work is the first complete characterization of the Mediterranean splash-zone coastal microbiome, and our results indicate that this microbial niche is home of an extremophilic community that holds biotechnological potential.     

漓江水陆交错带典型灌木群落根系分布与土壤养分的关系

在漓江流域水陆交错带选取一叶萩、细叶水团花、枫杨3种典型灌木群落,对不同土层深度的根长密度,以及根长密度与土壤有机质、全氮、有效磷的相关关系进行了研究,旨在为漓江流域生态修复过程中灌木植被恢复、主要灌木植被配置、快速绿化材料选取等提供科学依据。结果表明:(1)漓江水陆交错带典型灌木群落各土层根长密度差异性显著,分布规律均为:枫杨细叶水团花一叶萩。0—10 cm到40—60 cm土层,各灌木群落根长密度均减小,但不同灌木群落根长密度的差异程度逐渐缩小,表明地形、地表植物类型及生长状况对根长密度分布的影响也随土层深度的增加而逐渐减小。(2)枫杨(25.10g/kg)灌木群落底层腐殖质层厚,有机质含量最高,分别是细叶水团花、一叶萩的1.24、1.87倍。各灌木群落全氮含量从大到小依次是枫杨、细叶水团花、一叶萩,其值分别为:3.23、2.41、1.46 g/kg。土壤有效磷分布规律为一叶萩(11.56 mg/kg)细叶水团花(5.37 mg/kg)枫杨(3.99 mg/kg);一叶萩灌木群落有效磷含量远远大于枫杨和细叶水团花,原因是漓江水长期受人为洗漱影响,导致受江水干扰大的一叶萩灌木群落有效磷含量高。(3)根长密度与有机质、全氮含量呈正相关,与有效磷含量呈负相关,说明适量增加土壤有机质、全氮含量,减少土壤有效磷,有利于土壤根系的生长。根长密度与0L≤1 mm径级的根系所占比例呈极显著正相关,与1L≤2 mm径级的根系所占比例呈显著正相关,表明根系细根越多,根长密度越大。