Viscous Friction between Crystalline and Amorphous Phase of Dragline Silk

The hierarchical structure of spider dragline silk is composed of two major constituents, the amorphous phase and crystalline units, and its mechanical response has been attributed to these prime constituents. Silk mechanics, however, might also be influenced by the resistance against sliding of these two phases relative to each other under load. We here used atomistic molecular dynamics (MD) simulations to obtain friction forces for the relative sliding of the amorphous phase and crystalline units of Araneus diadematus spider silk. We computed the coefficient of viscosity of this interface to be in the order of 10² Ns/m² by extrapolating our simulation data to the viscous limit. Interestingly, this value is two orders of magnitude smaller than the coefficient of viscosity within the amorphous phase. This suggests that sliding along a planar and homogeneous surface of straight polyalanine chains is much less hindered than within entangled disordered chains. Finally, in a simple finite element model, which is based on parameters determined from MD simulations including the newly deduced coefficient of viscosity, we assessed the frictional behavior between these two components for the experimental range of relative pulling velocities. We found that a perfectly relative horizontal motion has no significant resistance against sliding, however, slightly inclined loading causes measurable resistance. Our analysis paves the way towards a finite element model of silk fibers in which crystalline units can slide, move and rearrange themselves in the fiber during loading.     

Response of Bacteria to Mechanical Stimuli

Microbiology - Bacteria adapt rapidly to changes in ambient conditions, constantly inspecting their surroundings by means of their sensor systems. These systems are often thought to respond only to...     

Silk Production after Mechanical Pulling Stimulation in the Ampullate Silk Glands of the Barn Spider, Araneus cavaticus

Synthesis of protein by the major ampullate silk glands in the barn spider, Araneus cavaticus was stimulated by depleting the storage of silk protein in the ampulla by mechanically pulling fiber from the spigot. After this treatment, fine structural changes of the glandular epithelium during silk production were examined using light and transmission electron microscopes. In the process of rapid production, major secretory silk was synthesized at the tail region via rER of glandular epithelial cells, and was transported into the ampulla region. The mature secretory product in glandular epithelium appears almost spherical vacuoles which were grown up by fusion with the surrounding small vesicles including the secretory silk. Unlike to a typical process of the secretion, the ampullate silk of tail region seems to bypass either concentrating or packaging steps by the Golgi apparatus. However there's no doubt that the Golgi apparatus also play an important role in the secretory process of the ampulla region. After mechanical pulling stimulation, both epithelia of ampulla and tail regions appeared as a thinner layer of columnar cells with less definitive cell membrane. There are few secretory droplets within these cells, thus causing this region to stain much lighter. It is obvious that the cell loses part of its cytoplasm in this process, and disorganization of the secretory product occurs when it is extruded from the cells by a apocrine release.     

4种常见蜘蛛蛛丝光学显微镜观察及机械性能的测定

对4种常见蜘蛛大腹园蛛Araneus ventricosus、迷宫漏斗蛛Agelena labyrinthica、草间钻头蛛Hylyphantes graminicola和棒络新妇Nephila clavata蛛丝的物理特性和机械性能进行了初步研究.结果 表明:捕丝是由2根核心丝构成,4种蛛丝呈现不同的颜色;4种蜘蛛蛛丝的密度略有不同,棒络新妇的蛛丝密度最大,草间钻头蛛的蛛丝密度最小;蛛丝中棒络新妇的断裂伸长率和断裂强度都最大,分别为47.3%和852.6 Nmm-2,草间钻头蛛蛛丝的断裂伸长率和断裂强度都最小,分别为32.1%和652.3 Nmm-2.与其它物理化学材料相比,蛛丝具有优异的综合力学性能,生物学特性与生物学功能具有高度一致性.     

Analysis of the Hyperthermophilic Chitinase from Pyrococcus furiosus: Activity toward Crystalline Chitin

Chitinase [EC 3.2.1.14] is an enzyme that can hydrolyze the β-1,4 linkage between N-acetyl-D-glucosamine in chitin. In the genome database of the hyperthermophilic archaeon Pyrococcus furiosus, we found two adjacent genes (PF1233 and PF1234) homologous to those of the chitinase of Thermococcus kodakaraensis. In the cultured medium of P. furiosus, however, no chitinase activity was detected. On analysis of the structural gene of P. furiosus, it appears that one nucleotide insertion in PF1234 caused a frame shift and separated a gene. By deletion of one nucleotide in PF1234, the best match was achieved between chitinases of T. kodakaraenesis and P. furiosus. We succeeded in constructing an artificial recombinant chitinase exhibiting hydrolytic activity toward not only colloidal but also crystalline chitins at high temperature. Furthermore, by analyzing the characteristics of the domains, a recombinant enzyme comprising two domains exhibiting high activity toward crystalline chitin was prepared.     

Crystalline formate dehydrogenase from Candida methanolica

Abstract Formate dehydrogenase (EC 1.2.1.2) was purified about 38-fold with an overall yield of 76% from a methanol-utilizing yeast, Candida methanolica (ATCC26175), in 4 steps and, by adding polyethylene glycol, the enzyme was crystallised for the first time. The final preparation appeared to be homogeneous by the criteria of polyacrylamide electrophoresis and analytical centrifugation. Compared with the yeast formate dehydrogenases so far reported, the purified enzyme exhibited higher specific activity (7.52 U/mg).     

Crystalline style proteins from bivalve molluscs

• 1.1. Proteins from crystalline styles of twelve species of bivalve mollusc were examined under different gel electrophoresis conditions and stained to reveal both protein and carbohydrate.
• 2.2. Native extracts of styles produced relatively few protein bands, however denaturation with SDS resulted in much more complex zymograms.
• 3.3. All species possessed several prominent high mol wt glycoproteins.
• 4.4. Eulamellibranchia all had a major non-glycosylated protein at approx. 62,000 mol. wt.
• 5.5. Most Filibranchia had a major non-glycosylated protein at 37,000–50,000 mol. wt.
• 6.6. Eulamellibranchia were a much more homogeneous group than the Filibranchia.