Fourteen microsatellite loci for the Chinese medicinal plant Epimedium sagittatum and cross-species application in other medicinal species

Epimedium sagittatum is a well-known medicinal plant as well as potential ground cover and ornamental plant. A total of 14 polymorphic microsatellite markers were developed for use in taxonomy, phylogenetics and conservation genetics. Markers were presented between two and eight alleles per locus. The observed heterozygosity (H(O) ) and expected heterozygosity (H(E) ) ranged from 0.03 to 0.81 and from 0.05 to 0.81, respectively. Cross-amplification among other four medicinal species revealed promising results in three to six polymorphic loci. These microsatellite loci contributed to the limited number of useful markers currently available for E. sagittatum.     

Development of tetranucleotide microsatellite markers for the cushion star, Asterina gibbosa, and cross-species amplification

We describe nine polymorphic tetranucleotide microsatellite loci from the starfish, Asterina gibbosa. Loci were isolated from a partial genomic library that had been enriched for AAAC repeat sequences. Number of alleles per locus ranged from two to 14 in a sample of 85 individuals from three populations (two from Spain and one from the UK). Observed and expected heterozygosities per population ranged from 0.000 to 0.400 and from 0.040 to 0.784, respectively. All loci presented significant heterozygote deficits in one or more populations. Eight of these loci were amplified and variable in A. pancerii and A. phylactica. These loci will be used to study population structure in A. gibbosa.     

木瓜实蝇对七种寄主果实的选择性

木瓜实蝇属于我国进境检疫性害虫。为明确该虫对不同寄主果实的选择性,以评价其危害风险,本研究选择橙子、苹果、番石榴、杨桃、木瓜、西红柿、辣椒7种果实作为供试寄主,在室内选择性条件下比较了木瓜实蝇在不同寄主上的产卵量和幼虫发育的适合性。结果表明,以寄主气味诱导产卵器采卵时,雌虫在番石榴、橙子上产卵量明显高于其它所有供试寄主;以果实直接诱导产卵时,则以番石榴饲养出的幼虫数最多,而在橙子、西红柿上的幼虫数为0。在非选择性条件下将幼虫接入果实供试,表明木瓜实蝇幼虫在不同供试寄主上的存活率(化蛹率)均较高,最高为木瓜和杨桃,分别为92.0%和91.3%,最低为苹果,达到66.0%。不同供试果实对木瓜实蝇幼虫的发育历期、存活率(化蛹率)和蛹重有显著影响,但各适合性指标在不同寄主间的变化趋势不一致。上述结果表明,寄主气味及果皮特征对成虫的产卵选择性具有明显的影响,以产卵选择性和幼虫发育为综合指标,认为木瓜实蝇对番石榴的选择性最高。     

桔小实蝇、木瓜实蝇和番石榴实蝇耐热性的热动力学分析

果实蝇属是重要的检疫性有害生物之一, 其中桔小实蝇Bactrocera dorsalis (Hendel)、 木瓜实蝇B. papayae Drew & Hancock和番石榴实蝇B. correcta (Bezzi)近几年在口岸检出率居高。本研究利用热水浸泡处理法比较这3种实蝇的卵、 1龄幼虫和3龄幼虫在44~47℃下的耐热性, 利用热动力学模型和活化能比较每种实蝇的耐热虫态以确定耐热种。结果表明： 在测定温度范围内, 3种实蝇卵、 1龄幼虫和3龄幼虫的死亡率都与处理时间呈正相关。热动力学系数取0.5时, 最适合热动力学模型预测3种实蝇在各实验温度LT_99.9968的致死时间。3种实蝇在44~47℃耐热性均为： 卵>1龄幼虫>3龄幼虫。番石榴实蝇在3种实蝇中最耐热。本研究结果为实蝇热处理指标的制定提供了实验依据。     

Isolation and characterization of new microsatellite markers for rose bitterlings, Rhodeus ocellatus

The Japanese rose bitterling (Rhodeus ocellatus kurumeus) is facing imminent extinction because of hybridization and competition from an invasive alien subspecies (Rhodeus ocellatus ocellatus). Eleven new microsatellite markers for the two subspecies were developed using dinucleotide repeat specific polymerase chain reaction. The number of alleles per locus and the heterozygosity in R. o. kurumeus were lower than those in R. o. ocellatus. Most of these microsatellite markers were successfully cross‐amplified in three Acheilognathinae species.     

Cross-species amplification of primers developed from Plantago major and P. intermedia in two Hawaiian Plantago species from the section Plantago

Thirty-nine primers, developed from the sister species Plantago major and P. intermedia, were tested in two Hawaiian Plantago species from the section Plantago. Eight primers were polymorphic, of which three were published earlier, and five are new ones presented here. Amplification and polymorphism levels appeared to be high in these Hawaiian species. These markers will be valuable for further mating system and evolutionary studies in species from the section Plantago that are closely related to P. major and P. intermedia.     

Polymorphic tetranucleotide microsatellites for Cope's giant salamander (Dicamptodon copei) and Pacific giant salamander (Dicamptodon tenebrosus)

We present primers and amplification conditions for 15 microsatellite loci developed for the Cope's giant salamander (Dicamptodon copei), 14 of which are tetranucleotide repeats. Cross-species amplification revealed 10 of these loci to also be polymorphic in the Pacific giant salamander (Dicamptodon tenebrosus). Several loci produced nonoverlapping allelic ranges between the two species and may be useful in species identification. These polymorphic microsatellite loci are potentially useful for future studies of population genetics in dicamptodontid salamanders.     

Developing 23 new polymorphic microsatellite markers and simulating parentage assignment in the Pacific bluefin tuna, Thunnus orientalis

Twenty-three new polymorphic microsatellite markers were isolated in the Pacific bluefin tuna, Thunnus orientalis. Each locus comprised three to 34 alleles. The expected and observed heterozygosities ranged between 0.46 and 0.96 and between 0.44 and 0.97, respectively. The Kto9, Kto11, and Kto42 markers demonstrated significant deviation from Hardy-Weinberg equilibrium; high null allele frequencies (0.08-0.14) were observed in the deviating group. From the results of simulation of parentage assignment, a combination of four loci (i.e. Kto15, Kto23, Kto38, and Kto39) was considered the best for parentage assignment.     

Extreme population subdivision or cryptic speciation in the cactus Pilosocereus jauruensis? A taxonomic challenge posed by a naturally fragmented system

In allopatric systems, where gene flow is highly constrained, the distinction between intraspecific differentiation and speciation is a challenging task. Pilosocereus jauruensis is a columnar cactus restricted to patchy dry habitats of Pantanal, Cerrado, and Chaco biomes in south-western Brazil and neighbouring countries. This species was recently reinstated after having been synonymized with P. machriisi, now including P. paraguayensis, P. saudadensis, and P. densivillosus as its synonyms. These taxa have been placed within the informal Aurisetus group. The present study aimed to investigate the genetic structure of P. jauruensis in order to identify possible distinct evolutionary lineages, and to support further refinement of the taxonomy of this species. For this purpose, 10 microsatellite loci were genotyped for 156 individuals of P. jauruensis. To provide a proxy for the expected interspecific differentiation level within this allopatric system, two populations (49 individuals) of P. vilaboensis (a species closely related to P. jauruensis) were also included. Additionally, two cpDNA markers (trnSGCU-trnGUCC and trnT-trnL) for a subsample of 44 individuals of both species were sequenced. The results obtained showed that even though P. jauruensis populations are relatively small and isolated, they still maintain a high level of genetic diversity (e.g., H_E = 0.557 to 0.725; H_O = 0.253 to 0.409). The study suggests the existence of two distinct taxa/evolutionary lineages through their entire distribution. Two populations found in the same geographic region of the now synonymized P. densivillosus showed significant genetic divergence when compared with other populations of P. jauruensis. In contrast, our results did not support an evolutionary independence hypothesis for populations that occur in the same geographic region of the synonymous P. saudadensis.     

Development and characterization of microsatellite markers for a monoecious Ficus species,Ficus insipida,and cross‐species amplification among different sections of Ficus

The animal‐mediated pollination and seed‐dispersal mutualisms of Ficus species give them key roles in tropical ecosystems, but may make them vulnerable to habitat fragmentation. The development of highly polymorphic markers is needed to analyse their genetic diversity and investigate the effects of fragmentation on gene flow. Of thirteen microsatellite loci isolated from Ficus insipida, a monoecious species in French Guiana, eleven were polymorphic (two to six alleles each). High levels of variation were found among loci; expected heterozygosities ranged from 0.151 to 0.715. All markers revealed a broad cross‐species affinity when tested in 23 other Ficus species.     

Contrasting introduction scenarios among continents in the worldwide invasion of the banana fungal pathogen Mycosphaerella fijiensis

Reconstructing and characterizing introduction routes is a key step towards understanding the ecological and evolutionary factors underlying successful invasions and disease emergence. Here, we aimed to decipher scenarios of introduction and stochastic demographic events associated with the global spread of an emerging disease of bananas caused by the destructive fungal pathogen Mycosphaerella fijiensis. We analysed the worldwide population structure of this fungus using 21 microsatellites and 8 sequence‐based markers on 735 individuals from 37 countries. Our analyses designated South‐East Asia as the source of the global invasion and supported the location of the centre of origin of M. fijiensis within this area. We confirmed the occurrence of bottlenecks upon introduction into other continents followed by widespread founder events within continents. Furthermore, this study suggested contrasting introduction scenarios of the pathogen between the African and American continents. While potential signatures of admixture resulting from multiple introductions were detected in America, all the African samples examined seem to descend from a single successful founder event. In combination with historical information, our study reveals an original and unprecedented global scenario of invasion for this recently emerging disease caused by a wind‐dispersed pathogen.     

Development and localization of microsatellite markers for the sibling species Chironomus riparius and Chironomus piger (Diptera: Chironomidae)

Five variable microsatellite loci are reported for the nonbiting midge species Chironomus riparius and Chironomus piger. All loci show considerable intraspecific variation and species‐specific alleles, which allow to discriminate among the two closely related species and their interspecific hybrids, and to estimate genetic diversity within and between populations. Additionally, the loci were localized on C. riparius polytene chromosomes to verify their single copy status and investigate possible chromosomal linkage. The described markers are used in different studies with regard to population and ecological genetics and evolutionary ecotoxicology of Chironomus.     

Genetic Differences Between Hatchery Stocks and Natural Populations in Pacific Abalone (<Emphasis Type="Italic">Haliotis discus</Emphasis>) Estimated Using Microsatellite DNA Markers

Genetic variations within and between nine hatchery stocks and seven natural populations of abalone including Ezo-abalone (Haliotis discus hannai) and Kuro-abalone (H. d. discus) were assayed with nine microsatellite markers. Marked reductions of genetic variability in the hatchery stocks were recognized in the allelic diversity and mean heterozygosity compared with the natural populations. Thirteen of 16 significant HWE deviations in hatchery stocks revealed heterozygotes excess, while all natural populations did not show such a tendency. Highly significant F _ST values were observed for all cases between the hatchery stocks, and between the hatchery stocks and natural populations. Genetic distance (D _A) between each hatchery stock and the geographically proximal population (mean ± SD, 0.108 ± 0.035) were similar to those estimated for between the natural Ezo-abalone and Kuro-abalone (0.101 ± 0.021). The self-assignment test, which allocated individuals to their own stock with a high success rate, provided evidence of solid genetic differences among the nine hatchery stocks. These results suggests that the allelic composition and diversity in the natural populations was not necessarily reflected in the hatchery stocks owing to population bottleneck and genetic drift through seedling process, and thus the seedling and stocking practice of these hatchery stocks should take much notice of the results to conserve the genetic diversity of natural populations.     

PERMANENT GENETIC RESOURCES: Cross-family amplification: microsatellites isolated from Macropodidae are polymorphic in Potoroidae

The superfamily Macropodoidea consists of two families - the Macropodidae and Potoroidae. Cross-species amplification and polymorphism of microsatellite loci is widely recognized within the macropodid family; however, the success of macropodid loci in potoroid species has not been as widely published. In this study, we tested the amplification and polymorphism of 17 cross-species microsatellite loci isolated from macropodids and potoroids in Bettongia lesueur (a potoroid). Success varied between loci and was not predicted by genetic distance from the species of isolation.