Salt marsh stabilization affects algal primary producers at the marsh edge

As sea level rise and human activities erode coastal wetlands, managers rebuild or preserve wetlands that can perform the ecosystem services of a natural system. One increasingly common mitigation activity is the construction of rock sills in the low marsh zone to stabilize marsh elevation. Sills dramatically alter the physical structure of marshes by changing elevation, adding hard substrate and potentially altering the spatial structure of benthic algal communities in and adjacent to the low marsh. We documented differences in benthic algal abundance at the seaward marsh edge in silled and unsilled marshes in North Carolina. We found that sills were associated with reduced standing stocks of benthic algal primary production and reduced macroalgal taxonomic richness, and this difference was driven primarily by differences in macroalgal abundance. We experimentally tested the effect of macroalgal abundance on cordgrass (Spartina alterniflora) growth in the low zone of an unmanipulated marsh, and found that macroalgal removal had no effect on final cordgrass abundance. Our study suggests that salt marsh management through the construction of sills in low marsh zones impacts benthic primary production in the low marsh zone, but that benthic algal production does not affect cordgrass growth over a growing season.     

Food storing by marsh tits

Wild marsh tits (Parus palustris) were allowed to hoard radioactively labelled sunflower seeds, which were subsequently found using a portable scintillation counter. Seeds were stored singly, in various sites close to the ground. Different birds favoured different types of site, although this preference was changeable. Seed density decreased with increasing distance from the feeder, and there was a negative correlation between seed sequence number and the distance it was carried. Hoarded seeds disappeared more rapidly than control seeds in identical sites 100 cm away, suggesting that the birds remember their exact location. Seeds also tended to be stored and recovered in the same sequence. The adaptive significance of these results is discussed.     

Modeling productivity of a salt marsh

A model of primary productivity in a salt marsh is developed and compared to a regression analysis study of data showing dependence of growth on growing season, mean tidal height, and average monthly temperatures for several grass species.     

Factors that control Typha marsh evapotranspiration

There is continuing debate about the controls on wetland evapotranspiration (E_t) and whether marshes are profligate water users. We used eddy covariance to measure the CO₂ exchange and E_t by a California Tule marsh in 2003. The marsh was dominated by Typha and Scirpus, and there was a large amount of standing litter that acted as a mulch. Canopy development was broadly related to air temperature, with rapid growth in May and senescence in October. E_t was a few tenths of a mm d⁻¹ in winter, and 3–4 mm d⁻¹ in summer. The midsummer Bowen ratio was ∼1, and the annual E_t was 49 cm. The peak rate of E_t was lower than has been reported for marshes based on lysimeter studies, somewhat lower than has been reported for marshes based on micrometeorological studies, and equivalent to, or somewhat lower than, has been reported for upland grassland. The midsummer water use efficiency was 0.0025 mol CO₂ mol⁻¹ H₂O, and the δ¹³C of foliage was −27.1‰, which are both typical for productive C₃ ecosystems. Transpiration accounted for 80% of total E_t. Evaporation from water standing beneath the canopy and mulch layer was only a minor component of the marsh's hydrological budget. The low rate of evaporation from standing water was a result of cool water temperatures, which remained within a few degrees of the nocturnal minimum on most days. We believe the mulch layer acted in a way analogous to an electrical diode that allowed the upward loss of heat from the water to the atmosphere at night, and shut off the flux of heat from the atmosphere to the water during daytime, resulting in cool subcanopy water and low rates of evaporation. Our observations are inconsistent with the hypothesis that Tule marshes are inefficient water users, or that their rates of transpiration and CO₂ uptake are unusual compared to upland ecosystems.     

Crenarchaeal heterotrophy in salt marsh sediments

Mesophilic Crenarchaeota (also known as Thaumarchaeota) are ubiquitous and abundant in marine habitats. However, very little is known about their metabolic function in situ. In this study, salt marsh sediments from New Jersey were screened via stable isotope probing (SIP) for heterotrophy by amending with a single ¹³C-labeled compound (acetate, glycine or urea) or a complex ¹³C-biopolymer (lipids, proteins or growth medium (ISOGRO)). SIP incubations were done at two substrate concentrations (30–150 μM; 2–10 mg ml⁻¹), and ¹³C-labeled DNA was analyzed by terminal restriction fragment length polymorphism (TRFLP) analysis of 16S rRNA genes. To test for autotrophy, an amendment with ¹³C-bicarbonate was also performed. Our SIP analyses indicate salt marsh crenarchaea are heterotrophic, double within 2–3 days and often compete with heterotrophic bacteria for the same organic substrates. A clone library of ¹³C-amplicons was screened to find matches to the ¹³C-TRFLP peaks, with seven members of the Miscellaneous Crenarchaeal Group and seven members from the Marine Group 1.a Crenarchaeota being discerned. Some of these crenarchaea displayed a preference for particular carbon sources, whereas others incorporated nearly every ¹³C-substrate provided. The data suggest salt marshes may be an excellent model system for studying crenarchaeal metabolic capabilities and can provide information on the competition between crenarchaea and other microbial groups to improve our understanding of microbial ecology.     

Microbial communities in contrasting freshwater marsh microhabitats

Heterotrophic microorganisms are widely recognized as crucial components of ecosystems; yet information on their community structure and dynamics in benthic freshwater habitats is notably scarce. Using denaturing gradient gel electrophoresis (DGGE), we determined the composition of bacterial and fungal communities in a freshwater marsh over four seasons. DGGE revealed diverse bacterial communities in four contrasting microhabitats. The greatest compositional differences emerged between water-column and surface-associated bacteria, although communities associated with sediment also differed from those on plant litter and epiphytic biofilms. Sequences of bacterial clones derived from DGGE bands belonged to the Alphaproteobacteria (31%), Actinobacteria (19%) and Bacteriodetes (19%). Betaproteobacteria were notably absent. Fungal clones obtained from leaf litter were mainly Ascomycota , but two members of the Basidiomycota were also identified. Overall, habitat type was the most important factor explaining variation in bacterial communities among samples, whereas temporal patterns in community composition were less pronounced in spite of large seasonal variation in environmental conditions such as temperature. The observed differences among bacterial communities in different microhabitats were not caused by random variation, but rather appeared to be determined by habitat characteristics, as evidenced by largely congruent community profiles of replicate samples taken at 10–100 m distances within the marsh.     

Dimethyl sulfide metabolism in salt marsh sediments

Abstract Anoxic sediment slurries prepared from Spartina salt marsh soils contained dimethyl sulfide (DMS) at concentrations ranging from 1 to 10 μM. DMS was produced in slurries over the initial 1–24 h incubation. After the initial period of production, DMS decreased to undetectable levels and methane thiol (MSH) was produced. Inhibition of methanogenesis caused a 20% decrease in the rate of DMS consumption, while inhibition of sulfate reduction caused a 80% decrease in DMS consumption. When sulfate reduction and methanogenesis were simultaneously inhibited, DMS did not decrease. DMS contributed about 28% to the methane production rate, while DMS probably contributed only 1% or less to the sulfate reduction rate. Incubation of the sediment slurries under an atmosphere of air resulted in similar DMS consumption compared to anaerobic incubations, but MSH and CH₄ were not evolved.
Sediments from the marsh released significant quantities of DMS when treated with cold alkali, indicating that potentially significant sources of DMS existed in the sediments. Values of base-hydrolyzable DMS as high as 190 μmol per liter of sediment were observed near the sediment surface, and values always decreased with depth in the sediment. Simple flux experiments with small intact sediment cores, showed that DMS was emitted from the marsh surface when cores were injected with glutaraldehyde or molybdate and 2-bromoethanesulfonate (BES), but nit when cores were left uninhibited. These results showed that DMS was readily metabolized by microbes in marsh sediments and that this metabolism may be responsible for reducing the emission of DMS from the marsh surface.     

Syntrophic-archaeal associations in a nutrient-impacted freshwater marsh

AIMS: Evaluation of the composition, distribution and activities of syntrophic bacteria and methanogens in soils from eutrophic and low nutrient regions of a freshwater marsh, and to compare these results with those obtained from a similar study in the Florida Everglades. METHODS AND RESULTS: Culture dependent and independent approaches were employed to study consortia of syntrophs and methanogens in a freshwater marsh. Methanogenesis from butyrate oxidation was fourfold higher in microcosms containing soil from eutrophic regions of the marsh than from low nutrient regions. Propionate was oxidized in eutrophic microcosms at lower rates than butyrate and with lower yields of methane. Sequence analysis of 16S rRNA gene clone libraries from DNA extracted from microcosms and soils revealed differences such that the dominant restriction fragment length polymorphism (RFLP) phylotypes (representing 82-88% of clone libraries) from eutrophic soils clustered with fatty acid oxidizing Syntrophomonas spp. The four dominant RFLP phylotypes (representing 11-24%) from microcosms containing soils from low nutrient regions were sequenced, and clustered with micro-organisms having the potential for fermentative and syntrophic metabolism. Archaeal 16S rRNA sequence analysis showed that methanogens from eutrophic regions were from diverse families, including Methanomicrobiaceae, Methanosarcinaceae, and Methanocorpusculaceae, but clone libraries from low nutrient soils revealed only members of Methanosarcinaceae. CONCLUSIONS: These findings indicate that syntroph-methanogen consortia differed with nutrient levels in a freshwater marsh. SIGNIFICANCE AND IMPACT OF THE STUDY: This is one of few studies addressing the distribution of fatty acid consuming-hydrogen producing bacteria (syntrophs) and their methanogenic partners in wetland soils, and the effects of eutrophication on the ecology these groups.     

Microbial indicators of oil-rich salt marsh sediments

Selected microbial parameters were monitored in sediments from a pristine and an oil-field salt marsh. Although numbers of hydrocarbonoclastic bacteria and fungi were significantly greater in the oil field, the values did not show a strong correlation with levels of hydrocarbons (r = 0.43 and r = 0.49, respectively). However, a high correlation was noted between ratios of hydrocarbonoclastic and total aerobic heterotrophic bacteria and levels of hydrocarbons as well as the relative concentration of hydrocarbons (ratio of hydrocarbons to chloroform extractables) (r = 0.87 and r = 0.77, respectively). Data suggest that this first ratio is a more valid microbial indicator of hydrocarbon abundance than other factors examined. Significant differences in the ratio of pigmented to total colony-forming units, the ratio of different to total colony-forming units, and the diversity index were noted between the natural and oil-field marsh. It is suggested that the presence of hydrocarbons alters the relative abundance of the most predominant aerobic heterotrophic bacteria.     

Decomposition of emergent macrophytes in a Wisconsin marsh

Loss of both dry weight and nutrients during decomposition was measured using litter bags, both in a natural marsh and in controlled experiments. At 348 days dry weight remains of Typha latifolia, Sparganium eurycarpum, Scirpus fluviatilis shoot litter in the marsh were 47.5, 26.9, 51.4% respectively, and for the rootrhizome litter were 59.1, 42.1, 27.8% (Scirpus > Sparganium > Typha). Under controlled conditions both temperature and type of water produced significant effect on dry weight loss of Typha leaves. Sterilization and antibiotics effectively inhibited the growth and activities of decomposers. Initial weight, N, P, Ca, and Mg losses resulted chiefly from leaching. These elements accumulated in spring and summer; N exhibited the highest accumulation. In the laboratory, N accumulation occurred within 15 days, as a result of microorganisms inhabiting the litter. Increase in P, Ca, Mg in later stages of decomposition were attributed to microorganisms, epiphytes, and precipitation from solution. High C : N ratios and relatively low P, Ca, Mg in original standing crop may be the cause of low herbivore consumption, whereas the relative increases in N, P, Ca, Mg in decomposed litter provide a more nutrient-rich substrate for detritivores. Much of the nutrient uptake in the annual cycle is via microbial and detritivore growth rather than by macrophyte producers.     

Methane emissions along a salt marsh salinity gradient

The seasonal flux of methane to the atmosphere was measured at three salt marsh sites along a tidal creek. Average soil salinities at the sites ranged from 5 to 17 ppt and fluxes ranged from below detection limits (less than 0.3 mgCH₄ m^-2 d^-1) to 259 mgCH₄ m^-2 d^-1. Annual flux to the atmosphere was 5.6 gCH₄ m^-2 from the most saline site, 22.4 gCH₄ m^-2 from the intermediate site, and 18.2 gCH₄ m^-2 from the freshest of the three sites. Regression of the amount of methane in the soil with flux indicates that changes in this soil methane can account for 64% of the observed variation in flux. Data on pore water distributions of sulfate suggests that the activity of sulfate reducing bacteria is a primary control on methane flux in these transitional environments. Results indicate that relatively high emissions of methane from salt marshes can occur at soil salinities up to approximately 13 ppt. When these data are combined with other tidal marsh studies, annual CH₄ flux to the atmosphere shows a strong negative correlation with the long term average soil salinity over a range from essentially fresh water to 26 ppt.     

Ecological processes shaping Central Patagonian salt marsh landscapes

Plant zonation is one of the most conspicuous ecological features of salt marshes worldwide. In this work we used a combination of field transplant and greenhouse experiments to evaluate the importance of interspecific interactions and physical stress in the determination of the major plant zonation patterns in Central Patagonian salt marshes. There, Spartina alterniflora dominates the low marsh, and Sarcocornia perennis the high marsh. We addressed two questions: (i) What prevents Spartina alterniflora from colonizing the Sarcocornia perennis‐dominated high marsh zone? and (ii) What prevents Sarcocornia perennis from colonizing the Spartina alterniflora‐dominated low marsh zone? Our experimental transplants combined with neighbour exclusion treatments showed that the presence of Sarcocornia perennis negatively affects Spartina alterniflora, preventing it from surviving and/or spreading. Complementary field transplant and greenhouse experiments showed that Sarcocornia perennis did not survive the frequent tidal submersion by approximately 1.5 m of turbid seawater in the Spartina alterniflora zone, but its survival was independent of the presence of Spartina neighbours, and of the strong soil anoxia as well. Our results suggest that Spartina alterniflora is excluded by Sarcocornia perennis towards the low marsh, where frequent and prolonged submersion limit the survival of the latter. We provide and discuss key baseline information to facilitate the future design of ecophysiological experiments designed to accurately identify the exact mechanisms acting in every situation.     

Microbial carbon monoxide consumption in salt marsh sediments

We have examined sediments from a fringing salt marsh in Maine to further understand marine CO metabolism, about which relatively little is known. Intact cores from the marsh emitted CO during dark oxic incubations, but emission rates were significantly higher during anoxic incubations, which provided evidence for simultaneous production and aerobic consumption in surface sediments. CO emission rates were also elevated when cores were exposed to light, which indicated that photochemical reactions play a role in CO production. A kinetic analysis of marsh surface sediments yielded an apparent K(m) of about 82 ppm, which exceeded values reported for well-aerated soils that consume atmospheric CO (65nM). Surface (0-0.2 cm depth interval) sediment slurries incubated under oxic conditions rapidly consumed CO, and methyl fluoride did not inhibit uptake, which indicated that neither ammonia nor methane oxidizers contributed to the observed activity. In contrast, aerobic CO uptake was inhibited by additions of readily available organic substrates (pyruvate, glucose and glycine), but not by cellulose. CO was also consumed by surface and sub-surface sediment slurries incubated under anaerobic conditions, but rates were less than during aerobic incubations. Molybdate and nitrate or nitrite, but not 2-bromoethanesulfonic acid, partially inhibited anaerobic uptake. These results suggest that sulfidogens and acetogens, but not dissimilatory nitrate reducers or methanogens, actively consume CO. Sediment-free plant roots also oxidized CO aerobically; rates for Spartina patens and Limonium carolinianum roots were significantly higher than rates for Spartina alterniflora roots. Thus plants may also impact CO cycling in estuarine environments.     

Plant community structure in an oligohaline tidal marsh

An oligohaline tidal marsh on the northern shore of Lake Pontchartrain, LA was characterized with respect to the distributions and abundances of plant species over spatial and temporal gradients using Detrended Correspondence Analysis (DCA). In addition, the species distributions were correlated to several physical environmental factors using Detrended Canonical Correspondence Analysis (DCCA). The distributions of species were best correlated with distance from Lake Pontchartrain, and to a lesser extent with elevation and substrate organic matter. They were least correlated with mean soil salinity (referred to here as background salinity). Of the three mid-seasonal dominant species, the perennial grass, Spartina patens, is the most salt tolerant and was found closest to the lake. Further inland the dominant perennial was Sagittaria lancifolia, which has a salt tolerance less than that of Spartina patens. The perennial sedge, Cladium jamaicense, which is the least salt tolerant of the three, was dominant furthest inland. Background salinity levels were generally low (<5 ppt.) and did not explain species distributions. We hypothesize that the distribution of species is regulated by occasional storm-generated salt pulses that generate strong, short-lived salinity gradients as a function of distance from the lake. Biotic interactions likely also play a role in structuring the plant community. The distributions of several annuals depended on the size and life history of the mid-seasonal dominant perennials. Most of the annuals frequently co-occurred with Sagittaria lancifolia, which was the shortest in stature and had the least persistent canopy of the three mid-seasonal dominant perennials.Abbreviations DCA Detrended Correspondence Analysis - DCCA Detrended Canonical Correspondence Analysis     

Arbuscular mycorrhizal fungal propagules in a salt marsh

The tolerance of indigenous arbuscular mycorrhizal fungi (AMF) to stressful soil conditions and the relative contribution of spores of these fungi to plant colonization were examined in a Portuguese salt marsh. Glomus geosporum is dominant in this salt marsh. Using tetrazolium as a vital stain, a high proportion of field-collected spores were found to be metabolically active at all sampling dates. Spore germination tests showed that salt marsh spores were not affected by increasing levels of salinity, in contrast to two non-marsh spore isolates, and had a significantly higher ability to germinate under increased levels of salinity (20) than in the absence of or at low salinity (10). Germination of salt marsh spores was not affected by soil water levels above field capacity, in contrast to one of the two non-marsh spore isolates. For the evaluation of infectivity, a bioassay was established with undisturbed soil cores (containing all types of AM fungal propagules) and soil cores containing only spores as AM fungal propagules. Different types of propagules were able to initiate and to expand the root colonization of a native plant species, but spores were slower than mycelium and/or root fragments in colonizing host roots. The AM fungal adaptation shown by this study may explain the maintenance of AMF in salt marshes.