Impacts of anthropogenic stress on rocky intertidal communities

Rocky shores provide a harsh environment for marine organisms andwe briefly discuss natural sources of variation in community structure beforeconsidering anthropogenic impacts in detail. We review impacts caused by (a) acutedisturbances: oil spills, toxic algal blooms and (b) chronic disturbances: nutrient pollution,oil, heavy metals, pesticides, antifouling paints, collecting, trampling/habitatdegradation, siltation and introduced species. Community level effects are emphasisedthroughout and illustrative examples are drawn from field-based case studies. Particularattention is given to the lessons learned from oil spills and the effect of chronicpollution by tributyltin on dogwhelks, the impacts of which ranged from the biochemical tocommunity levels of organisation. Impacts are placed in a global and historicalperspective and the potential for the recovery of shores under appropriate management isdiscussed. Finally we consider the relative merits of the multivariate and univariateapproaches to studying impacted communities and suggest priorities for future research.     

Nearshore subtidal community structure compared between inner coast and outer coast sites in Southeast Alaska

Processes that structure subarctic marine communities, particularly in glaciated regions, are not well understood. This understanding is needed as a baseline and to manage these communities in the face of future climate-driven changes. This study investigates two coastal regions of Southeast Alaska with the goals to (a) identify and compare patterns of subtidal community structure for macroalgal, fish, macroinvertebrate (>5?cm), and small epibenthic invertebrate (<5?cm) communities between inner coast and outer coast sites and (b) link patterns of community structure to habitat and environmental parameters. Species assemblage and benthic habitat data were used to compare species diversity and community composition at 6?m and 12?m depths at nine inner coast and nine outer coast sites. Multivariate analysis was applied to reduce environmental variables to major gradients, to resolve community structure, and to relate community structure to habitat and environmental variables. Increased salinity and decreased temperature at outer coast sites compared with inner coast sites were associated with community structure, with greater species diversity at outer coast sites at 6?m depth. Invertebrate community composition was associated with benthic habitat, including crust and coralline algae for macroinvertebrates, and algal cover and substrate for small epibenthic invertebrates. This research suggests that marine communities in glaciated regions are strongly influenced by freshwater input and that future climate-driven changes in freshwater input will likely result in marine community composition changes.     

Effects of crude oil on marine microbial communities in short term outdoor microcosms

To assess the effects of crude oil spills on marine microbial communities, 10 L outdoor microcosms were manipulated over an exposure period of 8 days. The responses of microbial organisms exposed to five crude oil concentrations in 10 to 10,000 ppm (v/v) were monitored in the microcosms. The abundance of microalgae and copepods decreased rapidly upon the addition of crude oil at concentrations over 1,000 ppm, whereas the total density of heterotrophic bacteria increased dramatically at the higher concentrations. Bacterial diversity, determined by denaturing gradient gel electrophoresis, was increased at higher concentrations. In particular, the intensity of the bands representing Jannaschia sp. and Sulfitobacter brevis increased with the addition of oil. These results indicate that crude oil spills with concentrations over 1,000 ppm seriously affected the structure of the microbial communities.     

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

The Deepwater Horizon oil spill in the Gulf of Mexico is the deepest and largest offshore spill in the United State history and its impacts on marine ecosystems are largely unknown. Here, we showed that the microbial community functional composition and structure were dramatically altered in a deep-sea oil plume resulting from the spill. A variety of metabolic genes involved in both aerobic and anaerobic hydrocarbon degradation were highly enriched in the plume compared with outside the plume, indicating a great potential for intrinsic bioremediation or natural attenuation in the deep sea. Various other microbial functional genes that are relevant to carbon, nitrogen, phosphorus, sulfur and iron cycling, metal resistance and bacteriophage replication were also enriched in the plume. Together, these results suggest that the indigenous marine microbial communities could have a significant role in biodegradation of oil spills in deep-sea environments.     

Bacterial diversity in marine hydrocarbon seep sediments

Marine seeps introduce significant amounts of hydrocarbons into oceans and create unusual habitats for microfauna and -flora. In the vicinity of chronic seeps, microbes likely exert control on carbon quality entering the marine food chain and, in turn, hydrocarbons could influence microbial community composition and diversity. To determine the effects of seep oil on marine sediment bacterial communities, we collected sediment piston cores within an active marine hydrocarbon seep zone in the Coal Oil Point Seep Field, at a depth of 22 m in the Santa Barbara Channel, California. Cores were taken adjacent to an active seep vent in a hydrocarbon volcano, on the edge of the volcano, and at the periphery of the area of active seepage. Bacterial community profiles were determined by terminal restriction fragment length polymorphisms (TRFLPs) of 16S ribosomal genes that were polymerase chain reaction (PCR)-amplified with eubacterial primers. Sediment carbon content and C/N ratio increased with oil content. Terminal restriction fragment length polymorphisms suggested that bacterial communities varied both with depth into sediments and with oil concentration. Whereas the apparent abundance of several peaks correlated positively with hydrocarbon content, overall bacterial diversity and richness decreased with increasing sediment hydrocarbon content. Sequence analysis of a clone library generated from sediments collected at the periphery of the seep suggested that oil-sensitive species belong to the gamma Proteobacteria and Holophaga groups. These sequences were closely related to sequences previously recovered from uncontaminated marine sediments. Our results suggest that seep hydrocarbons exert a strong selective pressure on bacterial communities in marine sediments. This selective pressure could, in turn, control the effects of oil on other biota in the vicinity of marine hydrocarbon seeps.     

Microbial communities in oil-contaminated seawater

Although diverse bacteria capable of degrading petroleum hydrocarbons have been isolated and characterized, the vast majority of hydrocarbon-degrading bacteria, including anaerobes, could remain undiscovered, as a large fraction of bacteria inhabiting marine environments are uncultivable. Using culture-independent rRNA approaches, changes in the structure of microbial communities have been analyzed in marine environments contaminated by a real oil spill and in micro- or mesocosms that mimic such environments. Alcanivorax and Cycloclasticus of the gamma-Proteobacteria were identified as two key organisms with major roles in the degradation of petroleum hydrocarbons. Alcanivorax is responsible for alkane biodegradation, whereas Cycloclasticus degrades various aromatic hydrocarbons. This information will be useful to develop in situ bioremediation strategies for the clean-up of marine oil spills.     

Assessing the Relative Sensitivity of Aquatic Organisms to Divalent Metals and Their Representation in Toxicity Datasets Compared to Natural Aquatic Communities

We compared the composition and richness of acute and chronic toxicity datasets for Cd, Cu, Ni, Pb, and Zn to several natural aquatic communities. The richness of acute datasets was reasonably representative, with the largest toxicity datasets containing a higher number of genera than some natural aquatic communities. Acute datasets also had a reasonably diverse composition compared to natural aquatic communities, although insects were under-represented and cladocerans over-represented. Given this robustness, we suggest manipulation of large acute datasets (Cd, Cu, Zn) to account for site-specific differences in aquatic community composition can be accomplished with confidence and that this will not result in under-protection of sensitive taxa. In contrast, the chronic datasets were not representative of natural aquatic communities in terms of composition or richness. Chronic dataset richness is an order of magnitude less than natural aquatic communities. Chronic datasets have minimal representation of insects, whereas cladocera and salmonids are grossly over-represented in some cases. Further, no real patterns in the relative sensitivity of genera groups can be discerned with such limited data. As a result, we conclude there is considerable uncertainty regarding how biases in genera representation may lead to under- or over-protection of aquatic communities on a chronic basis. Given this, manipulation of chronic datasets to better reflect site-specific aquatic communities is not recommended without additional chronic testing using a wider diversity of aquatic genera.     

Long-term ant community responses to selective harvesting of timber from Spotted Gum (Corymbia variegata)-dominated forests in south-east Queensland

Summary The conservation of biological diversity is a fundamental consideration in the management of production forests in eastern Australia. Invertebrate communities make up the bulk of diversity in these forests, yet few studies have been conducted to determine what impact, if any, timber harvesting may have on their structure, dynamics or diversity. We report here on a space-for-time study conducted in an open eucalypt production forest in south-east Queensland that investigated the long-term effects of selective timber harvesting on the ground-active ant community. Over a notional 30–40 year logging cycle, there were significant changes in the composition of ant functional groups, no significant changes to ant abundance and a weak trend to reduced ant species richness as time since harvesting increased. However, when ant community composition was compared with logging history and other environmental variables using a range of statistical tests, only small changes in ant community composition were attributable to timber harvesting. This suggested that the ant community was at least partially controlled by factors other than management history or the environmental variables measured in this study. The diversity, abundance and organization of ant communities is therefore unlikely to be detrimentally affected by selective harvesting of timber, as currently practiced in state-owned forests in south-east Queensland.     

Diversity of Archaea Communities within Contaminated Sand Samples from Johnston Atoll

A molecular 16S rRNA gene (SSU rDNA) analysis was performed for the determination of Archaea communities in polycyclic aromatic hydrocarbon (PAH)- and polychlorinated biphenyl (PCB)-contaminated sand samples obtained from Johnston Atoll. The objective of this study was to investigate Archaea community structure and phylogenetic diversity in a PAH- and PCB-contaminated marine environment that may potentially be intrinsically bioremediating these compounds. The clones obtained from this analysis were equally represented between the Crenarchaeota and Euryarchaeota phyla. This isolated marine environment is predominantly reef habitat, suggesting that the xenobiotic compounds introduced over time influenced the community structure of autochthonous Archaea. Phylogenetic diversity within these samples suggests that the resident Archaea populations were only distantly related to cultivated taxa and cloned sequences found in the public domain from both marine and terrestrial origins.     

Development and characterization of a cell line from Pacific herring, Clupea harengus pallasi, sensitive to both naphthalene cytotoxicity and infection by viral hemorrhagic septicemia virus

A cell line, PHL, has been successfully established from newly hatched herring larvae. The cells are maintained in growth medium consisting of Leibovitz's L-15 supplemented with 15% fetal bovine serum (FBS), and have been cryopreserved and maintain viability after thawing. These cells retain a diploid karotype after 65 population doublings. PHL are susceptible to infection by the North American strain of viral hemorrhagic septicemia (VHS) virus, and are sensitive to the cytotoxic effects of naphthalene, a common environmental contaminant. Naphthalene is a component of crude and refined oil, and may be found in the marine environment following acute events such as oil spills. In addition, chronic sources of naphthalene contamination include offshore drilling and petroleum contamination from areas such as docks and marinas that have creosote-treated docks and pilings and also receive constant small inputs of petroleum products. This cell line should be useful for investigations of the toxicity of naphthalene and other petroleum components to juvenile herring. In addition, studies of the VHS virus will be facilitated by the availability of a susceptible cell line from an alternative species.     

Catastrophic regime shifts in coral communities exposed to physical disturbances: Simulation results from object-oriented 3-dimensional coral reef model

A 3-dimensional individual-based model, the ReefModel, was developed to simulate the dynamical structure of coral reef community using object-oriented techniques. Interactions among functional groups of reef organisms were simulated in the model. The behaviours of these organisms were described with simple mechanistic rules that were derived from their general behaviours (e.g. growing habits, competitive mechanisms, response to physical disturbance) observed in natural coral reef communities. The model was implemented to explore the effects of physical disturbance on the dynamical structure of a 3-coral community that was characterized with three functional coral groups: tabular coral, foliaceous coral and massive coral. Simulation results suggest that (i) the integration of physical disturbance and differential responses (disturbance sensitivity and growing habit) of corals plays an important role in structuring coral communities; (ii) diversity of coral communities can be maximal under intermediate level of acute physical disturbance; (iii) multimodality exists in the final states and dynamic regimes of individual coral group as well as coral community structure, which results from the influence of small random spatial events occurring during the interactions among the corals in the community, under acute and repeated physical disturbances. These results suggest that alternative stable states and catastrophic regime shifts may exist in a coral community under unstable physical environment.     

Middle gaspé limestones communities on the forillon Peninsula,Quebec, Canada (Siegenian,Lower Devonian)

Lower Devonian quiet-water marine benthic communities were examined to determine what parameters of community structure are maintained from locality to locality. The preserved elements of the communities are dominated by brachiopods. Each community has a characteristic taxonomic composition and diversity. From stratigraphically lowest to highest the communities include the newly proposed Dawsonelloides Community which has relatively low diversity, and is strongly dominated by a single species. The Beachia Community is less strongly dominated by a single species. The newly proposed Leptostrophia Community is very strongly dominated by a single species; less common species are rare or absent in the other communities. The Plicoplasia Community is slightly less diverse than the preceeding two communities, but unlike them has six species which dominate one or more collections and are commonly found in reduced abundance in the other collections. The gradual change in taxonomic composition and structure from one community to adjacent communities coupled with the similar structure of diversity and dominance within particular communities suggest that these characteristics are time-averaged and primary structural features of the communities.     

Dramatic shifts in benthic microbial eukaryote communities following the Deepwater Horizon oil spill

Benthic habitats harbour a significant (yet unexplored) diversity of microscopic eukaryote taxa, including metazoan phyla, protists, algae and fungi. These groups are thought to underpin ecosystem functioning across diverse marine environments. Coastal marine habitats in the Gulf of Mexico experienced visible, heavy impacts following the Deepwater Horizon oil spill in 2010, yet our scant knowledge of prior eukaryotic biodiversity has precluded a thorough assessment of this disturbance. Using a marker gene and morphological approach, we present an intensive evaluation of microbial eukaryote communities prior to and following oiling around heavily impacted shorelines. Our results show significant changes in community structure, with pre-spill assemblages of diverse Metazoa giving way to dominant fungal communities in post-spill sediments. Post-spill fungal taxa exhibit low richness and are characterized by an abundance of known hydrocarbon-degrading genera, compared to prior communities that contained smaller and more diverse fungal assemblages. Comparative taxonomic data from nematodes further suggests drastic impacts; while pre-spill samples exhibit high richness and evenness of genera, post-spill communities contain mainly predatory and scavenger taxa alongside an abundance of juveniles. Based on this community analysis, our data suggest considerable (hidden) initial impacts across Gulf beaches may be ongoing, despite the disappearance of visible surface oil in the region.     

Pyrosequencing Characterization of the Microbiota from Atlantic Intertidal Marine Sponges Reveals High Microbial Diversity and the Lack of Co-Occurrence Patterns

Sponges are ancient metazoans that host diverse and complex microbial communities. Sponge-associated microbial diversity has been studied from wide oceans across the globe, particularly in subtidal regions, but the microbial communities from intertidal sponges have remained mostly unexplored. Here we used pyrosequencing to characterize the microbial communities in 12 different co-occurring intertidal marine sponge species sampled from the Atlantic coast, revealing a total of 686 operational taxonomic units (OTUs) at 97% sequence similarity. Taxonomic assignment of 16S ribosomal RNA tag sequences estimated altogether 26 microbial groups, represented by bacterial (75.5%) and archaeal (22%) domains. Proteobacteria (43.4%) and Crenarchaeota (20.6%) were the most dominant microbial groups detected in all the 12 marine sponge species and ambient seawater. The Crenarchaeota microbes detected in three Atlantic Ocean sponges had a close similarity with Crenarchaeota from geographically separated subtidal Red Sea sponges. Our study showed that most of the microbial communities observed in sponges (73%) were also found in the surrounding ambient seawater suggesting possible environmental acquisition and/or horizontal transfer of microbes. Beyond the microbial diversity and community structure assessments (NMDS, ADONIS, ANOSIM), we explored the interactions between the microbial communities coexisting in sponges using the checkerboard score (C-score). Analyses of the microbial association pattern (co-occurrence) among intertidal sympatric sponges revealed the random association of microbes, favoring the hypothesis that the sponge-inhabiting microbes are recruited from the habitat mostly by chance or influenced by environmental factors to benefit the hosts.     

贵州麻江地区寒武纪杷榔动物群的群落组成和生态空间分析*

寒武纪特异埋藏化石库保存了海洋生物群落最原始的生态结构, 为群落生态研究提供了宝贵材料。贵州寒武纪斜坡相区的杷榔动物群(第4期)具有较高的生物多样性, 但定量生态学研究相对薄弱。本研究对贵州麻江地区杷榔动物群的新产地平定剖面进行化石采集和分类统计, 并运用多元数理统计方法开展定量化分析。鉴定出腕足动物、海绵动物、刺胞动物、节肢动物、软舌螺动物、古虫动物、开腔骨动物和曳鳃动物8个化石门类, 计31属33种, 划分出12种生态类型。其中, 腕足动物具有最高的个体丰度(占比61.5%), 节肢动物物种分异度最高(占比60%), 群落以底栖固着生态类型为主, 游泳捕食为辅。对比分析结果显示, 寒武纪海洋群落具有空间异质性, 且节肢动物在影响群落组成和生态空间利用上起决定性作用。随水体深度增加, 海洋生态群落中的表栖类群出现明显扩张, 也体现了环境对群落面貌的塑造作用。     

Interactions between Zooplankton and Crude Oil: Toxic Effects and Bioaccumulation of Polycyclic Aromatic Hydrocarbons

We conducted ship-, shore- and laboratory-based crude oil exposure experiments to investigate (1) the effects of crude oil (Louisiana light sweet oil) on survival and bioaccumulation of polycyclic aromatic hydrocarbons (PAHs) in mesozooplankton communities, (2) the lethal effects of dispersant (Corexit 9500A) and dispersant-treated oil on mesozooplankton, (3) the influence of UVB radiation/sunlight exposure on the toxicity of dispersed crude oil to mesozooplankton, and (4) the role of marine protozoans on the sublethal effects of crude oil and in the bioaccumulation of PAHs in the copepod Acartia tonsa. Mortality of mesozooplankton increased with increasing oil concentration following a sigmoid model with a median lethal concentration of 32.4 µl L⁻¹ in 16 h. At the ratio of dispersant to oil commonly used in the treatment of oil spills (i.e. 1∶20), dispersant (0.25 µl L⁻¹) and dispersant- treated oil were 2.3 and 3.4 times more toxic, respectively, than crude oil alone (5 µl L⁻¹) to mesozooplankton. UVB radiation increased the lethal effects of dispersed crude oil in mesozooplankton communities by 35%. We observed selective bioaccumulation of five PAHs, fluoranthene, phenanthrene, pyrene, chrysene and benzo[b]fluoranthene in both mesozooplankton communities and in the copepod A. tonsa. The presence of the protozoan Oxyrrhis marina reduced sublethal effects of oil on A. tonsa and was related to lower accumulations of PAHs in tissues and fecal pellets, suggesting that protozoa may be important in mitigating the harmful effects of crude oil exposure in copepods and the transfer of PAHs to higher trophic levels. Overall, our results indicate that the negative impact of oil spills on mesozooplankton may be increased by the use of chemical dispersant and UV radiation, but attenuated by crude oil-microbial food webs interactions, and that both mesozooplankton and protozoans may play an important role in fate of PAHs in marine environments.     

Exploring the diversity of bacterial communities in sediments of urban mangrove forests

Municipal sewage, urban runoff and accidental oil spills are common sources of pollutants in urban mangrove forests and may have drastic effects on the microbial communities inhabiting the sediment. However, studies on microbial communities in the sediment of urban mangroves are largely lacking. In this study, we explored the diversity of bacterial communities in the sediment of three urban mangroves located in Guanabara Bay (Rio de Janeiro, Brazil). Analysis of sediment samples by means of denaturing gradient gel electrophoresis (DGGE) of 16S rRNA gene fragments suggested that the overall bacterial diversity was not significantly affected by the different levels of hydrocarbon pollution at each sampling site. However, DGGE and sequence analyses provided evidences that each mangrove sediment displayed a specific structure bacterial community. Although primer sets for Pseudomonas, alphaproteobacterial and actinobacterial groups also amplified ribotypes belonging to taxa not intended to be enriched, sequence analyses of dominant DGGE bands revealed ribotypes related to Alteromonadales, Burkholderiales, Pseudomonadales, Rhodobacterales and Rhodocyclales. Members of these groups were often shown to be involved in aerobic or anaerobic degradation of hydrocarbon pollutants. Many of these sequences were only detected in the sampling sites with high levels of anthropogenic inputs of hydrocarbons. Many dominant DGGE ribotypes showed low levels of sequence identity to known sequences, indicating a large untapped bacterial diversity in mangrove ecosystems.     

A comparison of the short term effects of diesel fuel and lubricant oils on Antarctic benthic microbial communities

The effects of diesel fuel and three lubricating oils on microbial communities in marine sediment were investigated in a field experiment at Casey Station, Antarctica. Sediment from a pristine site in Antarctica was treated with either Special Antarctic Blend (SAB) diesel, a synthetic lubricant (Mobil 0W-40), the same lubricant after use in a vehicle or an equivalent unused biodegradable lubricant (Titan GT1). The sediment was re-deployed in trays on the seabed for 5 weeks during the austral summer. The microbial community structure in the sediment upon collection, deployment and retrieval was investigated using denaturing gradient gel electrophoresis (DGGE), most probable number (MPN) counts and direct microscopic counting. It was found that only minor changes occurred in the microbial communities due to the experimental protocol. After 5 weeks however, there were significant differences between the communities in the SAB and clean and used lubricant (Mobil 0W-40) as compared to the control treatment. There was no significant difference between the control and biodegradable oil (Titan GT1) treatment. These results indicate that SAB and synthetic lubricants have a measurable effect on sediment microbial communities in the short-term. The biodegradable oil did not produce such an effect and we conclude that the use of such an oil could reduce the risks associated with oil spills in the Antarctic environment.     

Ecological response of nitrification to oil spills and its impact on the nitrogen cycle

Marine oil spills are catastrophic events that cause massive damage to ecosystems at all trophic levels. While most of the research has focused on carbon-degrading microorganisms, the potential impacts of hydrocarbons on microbes responsible for nitrification have received far less attention. Nitrifiers are sensitive to hydrocarbon toxicity: ammonia-oxidizing bacteria and archaea being 100 and 1000 times more sensitive than typical heterotrophs respectively. Field studies have demonstrated the response of nitrifiers to hydrocarbons is highly variable and the loss of nitrification activity in coastal ecosystems can be restored within 1–2 years, which is much shorter than the typical recovery time of whole ecosystems (e.g., up to 20 years). Since the denitrification process is mainly driven by heterotrophs, which are more resistant to hydrocarbon toxicity than nitrifiers, the inhibition of nitrification may slow down the nitrogen turnover and increase ammonia availability, which supports the growth of oil-degrading heterotrophs and possibly various phototrophs. A better understanding of the ecological response of nitrification is paramount in predicting impacts of oil spills on the nitrogen cycle under oil spill conditions, and in improving current bioremediation practices.