Molecular phylogeny of the New World gecko genus Homonota (Squamata: Phyllodactylidae)

The genus Homonota was described by Gray (1845) and currently includes 10 species: Homonota andicola, H. borellii, H. darwinii, H. fasciata, H. rupicola, H. taragui, H. underwoodi, H. uruguayensis, H. williamsii & H. whitii and one subspecies of H. darwinii (H. darwinii macrocephala). It is distributed from 15° latitude south in southern Brazil, through much of Bolivia, Paraguay, Uruguay and Argentina to 54° south in Patagonia and across multiple different habitats. Several morphological taxonomic studies on a subset of these species have been published, but no molecular phylogenetic hypotheses are available for the genus. The objective of this study is to present a molecular phylogenetic hypothesis for all the described species in the genus. We sequenced two mitochondrial genes (cyt‐b & 12S: 1745 bp), seven nuclear protein coding (RBMX, DMLX, NKTR, PLRL, SINCAIP, MXRA5, ACA4: 5804 bp) and two anonymous nuclear loci (30Hb, 19Hb: 1306 bp) and implemented traditional concatenated analyses (MP, ML, BI) as well as species‐tree (*beast ) approaches. All methods recovered almost the same topology. We recovered the genus Homonota as monophyletic with strong statistical support. Within Homonota, there are three strongly supported clades (whitii, borellii and fasciata), which differ from those previously proposed based on scale shape, osteology, myology and quantitative characters. Detailed morphological analyses based on this highly resolved and well‐supported phylogeny will provide a framework for understanding morphological evolution and historical biogeography of this phenotypically conservative genus. We hypothesize that extensive marine transgressions during Middle and Late Miocene most probably isolated the ancestors of the three main clades in eastern Uruguay (borellii group), north‐western Argentina‐southern Bolivia (fasciata group), and central‐western Argentina (whitii group). Phylogeographic and morphological/morphometric analyses coupled with paleo‐niche modelling are needed to better understand its biogeographical history.     

Embryonic development of the skeleton of Amphisbaena darwini heterozonata (Squamata: Amphisbaenidae)

An assemblage of amphisbaenian embryos has allowed us to characterize the external morphology of the developing embryos as well as the chondrification and ossification sequences of their skeletal elements. The external characterization of embryos serves as an incomplete developmental table. In contrast to the condition in other squamates, the premaxilla seems to arise azygously from the beginning or to represent very early fusion during embryogenesis. The tabulosphenoid forms from two cartilages to which are added extensive membranous ossifications. The two parietals engage in medial fusion at the midline, where the anterior process of the synotic tectum ossifies and forms the sagittal crest. The lateral element‐X does not ossify until very late in embryogenesis and is interpreted as an epiphysial ossification. The compound mandibular bone arises from the ossification of the posterior part of Meckel's cartilage and the fusion of at least two dermal centers, interpreted as surangular and splenial. The vertebral column shows an antero‐posterior gradient of vertebral differentiation. The number of vertebrae is fixed from the beginning of their differentiation. The remnants of pectoral and pelvic girdles are represented by cartilaginous rods. Some reproductive data obtained during the collection of data could be compared with those from the literature. J. Morphol. 239:1–25, 1999. © 1999 Wiley‐Liss, Inc.     

Mitochondrial Diversity and Phylogeographic Patterns of Gekko gecko(Squamata: Gekkonidae) in Thailand

The Tokay Gecko, Gekko gecko(Linnaeus, 1758) is widely distributed in Asia and there have been concerns regarding locally decreasing populations due to overexploitation for traditional Chinese medicine. Previous studies of the genetic relationships of G. gecko populations included few populations from Thailand. Here we investigated the phylogeographic patterns of G. gecko from different regions in Thailand using mitochondrial cytochrome b sequences. Phylogenetic analyses revealed two lineages: one(Lineage A) comprising populations from Laos, Vietnam, and Thailand; and a second(Lineage B) comprising three genetically distinct groups within Thailand alone. Some Thai populations were found to have both lineages represented within them. Highly significant genetic differentiation(FST) showed geographic population structuring in Lineage B, indicating limited gene flow among groups in Thailand. Although G. gecko has a wide distribution and is well adapted to human habitation, the observed genetic structure could potentially be explained by geographic barriers such as mountain ranges. In Lineage A, our study provided primary phylogeographic evidence for lineage mixture that might be a result of human-mediated transport. Future research should include more extensive sampling across the geographic distribution of G. gecko and a landscape genetics approach could be applied for conservation planning.     

The development of cephalic armor in the tokay gecko (Squamata: Gekkonidae: Gekko gecko)

Armored skin resulting from the presence of bony dermal structures, osteoderms, is an exceptional phenotype in gekkotans (geckos and flap-footed lizards) only known to occur in three genera: Geckolepis, Gekko, and Tarentola. The Tokay gecko (Gekko gecko LINNAEUS 1758) is among the best-studied geckos due to its large size and wide range of occurrence, and although cranial dermal bone development has previously been investigated, details of osteoderm development along a size gradient remain less well-known. Likewise, a comparative survey of additional species within the broader Gekko clade to determine the uniqueness of this trait has not yet been completed. Here, we studied a large sample of gekkotans (38 spp.), including 18 specimens of G. gecko, using X-rays and high-resolution computed tomography for visualizing and quantifying the dermal armor in situ. Results from this survey confirm the presence of osteoderms in a second species within this genus, Gekko reevesii GRAY 1831, which exhibits discordance in timing and pattern of osteoderm development when compared with its sister taxon, G. gecko. We discuss the developmental sequence of osteoderms in these two species and explore in detail the formation and functionality of these enigmatic dermal ossifications. Finally, we conducted a comparative analysis of endolymphatic sacs in a wide array of gekkotans to explore previous ideas regarding the role of osteoderms as calcium reservoirs. We found that G. gecko and other gecko species with osteoderms have highly enlarged endolymphatic sacs relative to their body size, when compared to species without osteoderms, which implies that these membranous structures might fulfill a major role of calcium storage even in species with osteoderms.     

A New Species of the Gekko japonicus Group(Squamata: Gekkonidae) from Southwest China

A new species of the Gekko(Squa ma ta:Gekkonidae)is described from the border of Sichuan and Yunnan Province,southwest China,based on distinct morphological and molecular features.Gekko jinjiangensis sp.nov.is distinguished from congeners by a combination of the following characters:size small(SVL 50.2–61.6 mm,n=13);nares in contact with rostral;interorbital scales between anterior corners of the eyes 20–24;ventral scales between mental and cloacal slit 146–169;midbody scale rows 111–149;ventral scale rows 31–47;subdigital lamellae on first toe 8–11,on fourth toe 11–15;no webbing in the fingers and toes;with tubercles on uapper surface of fore and hind limbs;precloacal pores 4–5 in males;postcloacal unilateral tubercles 1–2;dorsal surface of body with 8–9 large greyish brown markings between nape and sacrum.In molecular analyses,the new species is sister to G.scabridus,but separated from them by approximately 9.9%–12.2%in genetic divergence as shown by a fragment of the partial mitochondrial ND2 gene.The new species is the highest Gekko with elevation range from 2000 to 2476 m.Further surveys are recommended to better understand the occurrence and population status of the new species.     

Morphology of the stomach of the tropical house gecko Hemidactylus mabouia (Squamata: Gekkonidae)

Rodrigues Sartori, S. S., Nogueira, K. O. P. C., Rocha, A. S. and Neves, C. A. 2011. Morphology of the stomach of the tropical house gecko Hemidactylus mabouia (Squamata: Gekkonidae). —Acta Zoologica (Stockholm) 92 : 179–186. Hemidactylus mabouia is a common species in Brazil, which facilitates its use in research in several areas and allows display it as a benchmark for studies with reptiles. To study the morphology of the stomach of H. mabouia, we carried out anatomical, histological and histochemical analysis. The stomach of H. mabouia is ‘J’ shaped and can be divided into oral fundic (OF), aboral fundic (AF) and pyloric regions. The surface epithelium is composed of mucosecretory cells (MC) containing neutral mucins. In the lamina propria of the OF region, are large ramified tubulo‐acinar glands, which become smaller, less ramified and more tubular towards the AF region, and are simple tubular and short in the pyloric region. The fundic glands contain differentiated neck and pit. The neck is composed of MC containing neutral mucins and the pit is made of oxyntopeptic cells (OC). The OC of the OF region contained many zymogen granules, while those of the AF region contained few zymogen granules and many mitochondria, which suggests the existence of a gradient of pepsinogen and hydrochloric acid secretion. Pyloric glands consisted of MC containing neutral mucins and both argyrophil and argentaffin endocrine cells.     

Molecular phylogenetic relationships among species of the Malagasy-Comoran gecko genus Paroedura (Squamata: Gekkonidae)

We use approximately 3100bp of mitochondrial (ND2, ND4) and nuclear (RAG1, phosducin) DNA sequence data to recover phylogenetic relationships among 14 of the 16 recognized taxa of the lizard genus Paroedura as well as two undescribed forms. These geckos are endemic to Madagascar and the Comores and are popularly kept and bred by herpetoculturalists. The closest relative of Paroedura is another Indian Ocean leaf-toed gecko, Ebenavia. Both Bayesian inference and maximum parsimony strongly support the monophyly of two major clades within Paroedura that conflict with existing species group assignments based on scale characteristics. Our well-resolved tree elucidates a biogeographic pattern in which eastern Paroedura are most basal and western and south-western species form a monophyletic group. Our data demonstrate the phylogenetic utility of phosducin, a novel marker in squamate phylogenetics, at the intrageneric level.     

Hemidactylus frenatus (Squamata: Gekkonidae): call frequency, movement and condition of tail in Costa Rica

Call frequency and movements of the gecko Hemidactylus frenatus were studied in Punta Morales, Costa Rica from April 1999 through May 2000. Call activity of H. frenatus was positively related to air temperature at night and throughout the year. Higher activity was at dusk, dawn, and during the hottest months. Call frequency was related with gecko abundance per month, although not during the night. More males and females had a regenerated tail compared to juveniles, the last ones could have it complete or regenerated. Females moved longer distances than males and juveniles. Adults were found higher on walls. Males and females were recaptured more times than juveniles, and the period of time between their recaptures was longer. Members of this population do not seem to be as aggressive to other geckos as mentioned in the literature.     

A partial systematic revision of the day geckos, Phelsuma Gray, of Madagascar (Reptilia: Squamata: Gekkonidae)

Recent survey work in Madagascar has led to significant changes in the systematics of Madagascan Phelsuma. A new species from the Masoala Peninsula in northeastern Madagascar is described, which has a nostril position typical of Phelsuma from Mauritius, Reunion and Rodriguez islands. Phelsuma breviceps was rediscovered in extreme southern Madagascar and is resurrected from the synonymy of P. mutabilis. Phelsuma breviceps has fragile skin, a probable predator escape mechanism, similar to the condition found in geckos of the genera Ailuronyx and Geckokpis. Three new synonyms are recognized. Phelsuma befotahensis and P. checki are junior synonyms of P. abbotti , and P. minuthi is a junior synonym of P. lineata. Twenty species of Phelsuma occur in Madagascar, of which 16 are endemic. A checklist and identification key are provided. Conservation problems of Phelsuma in the coastal regions of Madagascar are briefly discussed.     

Gas exchange morphometry of the lungs of the tokay,Gekko gecko L. (Reptilia: Squamata: Gekkonidae)

The tokay lizard (Gekko gecko) possesses singlechambered lungs, eacch of which is a mirror image of the other reflected in the midsagittal body plane. When standard techniques are employed for instilling 2% phosphate-buffered glutaraldehyde to three-quarters of the total lung capacity, neither the left nor the right lung is consistently larger. Internally, the lungs are characterized by a row of 11 dorsomedial niches and by honeycomb-like (faveolar) gas exchange tissue, which is deeper cranially than caudally. Based upon mean values for all experimental animals, a 100-g tokay would have an overall anatomical diffusion factor (respiratory surface area divided by the appropriate _ht) of 203 cm²·m^-1·100 g^-1, 61% of which is located on the interfaveolar septa. Of the total septal anatomical diffusion factor, 94% is evenly divided between the anterior and middle thirds of the lung, with 6% in the posterior third. The 39% of the anatomical diffusion factor located on the inner lung wall is predominantly (76%) in the middle and posterior lung thirds, with only 24% in the anterior region. These tendencies toward heterogeneous distribution of anatomical diffusion factor were most pronounced in a 55 g juvenile animal. In this animal the total anatomical diffusion faxtor/body mass was 3.6 times that of a 197 g adult. This difference was attributable to a greater body massspecific lung volume and respiratory surface area as well as to a greater surface-to-volume ratio in the parenchyma and to a thinner air-blood diffusion barrier in the juvenile animal.Abbreviations ADF anatomical diffusion factor - %AR percentage of potential respiratory surface area which makes up S_AR - DtO₂ diffusing capacity for air-blood tissue barrier - IUR isotropic uniform randomly distributed - bm body mass - %P percentage of lung volume devoted to parenchyma - S _A potential respiratory surface area (S _L minus the surface area of the trabeculae) - S _ANR non-respiratory surface area - S _AR respiratory surface area - S _L total internal surface area of the lung - S _v surface area-to-volume ratio in parenchyma - _ht harmonic mean thickness of the air-blood tissue barrier - V _L morphometrically determined volume of both lungs, fixed at 0.75· V _Lm - V _Lm maximal lung volume, similar to total lung capacity in mammals - V _Lr resting lung volume, similar to functional residual capacity in mammals - VP morphometrically determined volume of parenchyma of both lungs, fixed at three-quarters of V_Lm     

Burrow Characteristics and Microhabitat Use of the Turpan Wonder Gecko Teratoscincus roborowskii(Squamata,Gekkonidae)

Burrow structural charactersitcs and microhabitat use of the Turpan wonder gecko Teratoscincus roborowskii(Gekkonidae) were studied between April and September of 2013 in the Turpan Eremophytes Botanic Garden,in the Turpan Depression of Western China.Burrow depth,entrance orientation,entrance height and width were observed.We assessed microhabitat selection and noted differences in microhabitat use among males,females,and juveniles.The magnitude of selection was measured using Jacobs' index of selectivity.Entrance height and width of the burrows of adults were significantly larger than those of juveniles,but the difference in burrow depth was not significant.The directional orientation of the burrow entrance showed a preference for the north-northeast and south-southeast,which were likely influenced by local prevailing winds and sunlight.Both the adult and juvenile geckos prefer to construct their burrows in sandy soil within a layer of loose soil whose thickness is greater than 30 cm.A majority of the burrows were located within 20 m of the nearest plant.Nearly half(48%) of the entrances of juveniles were located within 5 m of the nearest vegetation,significantly different from those of the adults.Results showed that the Turpan wonder gecko did not utilize microhabitats according to their availability,but rather that it preferred microhabitats which contained dead wood or the caper bush.Our results suggested that burrow characteristics and microhabitat selection were important factors in T.roborowskii adaptation to harsh and arid desert habitats.     

The cell masses in the diencephalon of Amphisbaena darwini heterozonata Burmeister (Amphisbaenia, Squamata, Reptilia).

The cell masses of the diencephalon of Amphisbaena darwini heterozonata are studied and confronted with those of other reptiles, specially with the burrowing ophidian Typhlopidae. The main differences are in the thalamus dorsalis. The amphisbaenids share with the Typhlopidae the absence of the lateral and pretectal geniculate bodies, and share with the squamate reptiles, differing from the typhlopids, the remaining structures of the dorsal thalamus, characterized by the well-developed nucleus rotundus. These features support the idea that the amphisbaenids could be situated within the Squamata at the same level as in Ophidia and Lacertilia. The adaptive processes toward a burrowing behavior have not been the same in amphisbaenids and in the typhlopids. The causes of the dissimilarities of the dorsal thalamus could be related to other sense and non-sense systems apart from the optic. The morphology of the elements of the cell masses has been studied by the Golgi method.     

Cryptic species and Miocene diversification of Palaearctic naked‐toed geckos (Squamata: Gekkonidae) in the Indian dry zone

We sampled Palaearctic naked‐toed geckos from across their range in India and used two mitochondrial and two nuclear genes to reconstruct relationships within a global phylogeny. Published sequences of Peninsular Indian Hemidactylus allow us to contrast these two groups in dating analyses – providing insights into the history of the Indian dry zone. Palaearctic naked‐toed geckos first moved onto the Indian Plate in the Oligocene, with higher‐level diversification probably linked to collision of the Indian and Eurasian plates, and subsequent dispersal into‐India and diversification with increasing Miocene aridity. An independent gekkonid radiation with species in the dry zone, Hemidactylus diversified during the same period in Peninsular India. Our results demonstrate that dry zone taxa across India may date back to at least the Miocene, with a potential historical climatic barrier between the Indus and Peninsular Indian Divisions. ‘Cyrtopodion’ aravallense is revealed to be a complex with seven genetically and environmentally divergent lineages that began diversifying in the late Miocene, congruent with increased aridity in north‐western India. This discovery of cryptic diversity in the Indian dry zone represents the first terrestrial vertebrate radiation from north‐western central India and highlights how little we understand of the regions’ biodiversity, emphasizing the need for systematic geographic sampling and multiline evidence to reveal true patterns of diversity. The ancestor of ‘Cyrtopodion’ aravallense came into the nascent Indian dry zone in the Miocene and has since diversified, potentially in the absence of any sympatric scansorial rupicolous geckos. Cyrtopodion scabrum represents a unique case of commensalism and shows phylogeographic structure in its presumed native range. The taxonomic implications of our study include a number of undescribed species, recognition of ‘Cyrtopodion’ as a distinct lineage and the non‐monophyly of Altiphylax.     

A new species of Thecadactylus from Sint Maarten, Lesser Antilles (Reptilia, Squamata, Gekkonidae)

We describe a new species of Thecadactylusfrom the Caribbean island of Sint Maarten. The new species differs from all other species in the genus by having a distinct dorsal pattern of numerous irregular but sharply deliminated black spots and blotches on an otherwise almost patternless background.     

Overlap of Female Reproductive Cycles Explains Shortened Interclutch Interval in a Lizard with Invariant Clutch Size (Squamata: Gekkonidae: Paroedura picta)

Abstract Variable clutch size is unambiguously an ancestral state in reptiles. Only several lizard lineages have evolved so-called invariant clutch size, where all females lay just one or two eggs per clutch. This mode of reproduction is characteristic for geckos. In some gecko lineages, decreased fecundity in a single clutch is compensated by conspicuous shortening of interclutch intervals. The proximate mechanism of high clutch frequency in these geckos is not known. Here, we document that three subsequently laid clutches develop simultaneously in females of the Madagascar ground gecko (Paroedura picta). The extremely short interclutch intervals in this species-even as short as a week-thus could be attributed to the overlap of female reproductive cycles. Such overlap should be associated with altered female hormonal cycles. Based on measurements of hormonal levels, we suggest that cycles of estradiol and progesterone during reproductive cycles of females in P. picta are largely independent. Thus, in contrast to the presumable ancestral reptile state, higher levels of progesterone do not seem to interfere with vitellogenesis in this species. We discuss potential consequences of this derived mode of reproduction, such as possible simultaneous maternal transfer of nutrients and other yolk components to several subsequent clutches.     

Physiological colour change in the Moorish gecko,Tarentola mauritanica (Squamata: Gekkonidae): effects of background,light, and temperature

Colour has many different functions in animals, such as an involvement in thermoregulation, crypsis, and social interactions. Species capable of physiological colour change may alter their coloration in response to ecological conditions. The Moorish gecko, Tarentola mauritanica, is capable of actively changing its body coloration. In the present study, we investigated colour change in this gecko as a function of background, temperature, and light. Our results demonstrate that the Moorish gecko indeed changes its dorsal colour in response to changes in environmental conditions. By contrast to several other reptilian species, this rapid colour change does not appear to be associated with thermoregulation. Background matching, however, did appear to be a prominent function, although illumination appears to be an essential trigger. Future research should concentrate on individual variation and its effectiveness with respect to antipredatory mechanisms. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ?? , ??–??.     

Multiple origins and rapid evolution of duplicated mitochondrial genes in parthenogenetic geckos (Heteronotia binoei; Squamata, Gekkonidae)

Accumulating evidence for alternative gene orders demonstrates that vertebrate mitochondrial genomes are more evolutionarily dynamic than previously thought. Several lineages of parthenogenetic lizards contain large, tandem duplications that include rRNA, tRNA, and protein-coding genes, as well as the control region. Such duplications are hypothesized as intermediate stages in gene rearrangement, but the early stages of their evolution have not been previously studied. To better understand the evolutionary dynamics of duplicated segments of mitochondrial DNA, we sequenced 10 mitochondrial genomes from recently formed ( approximately 300,000 years ago) hybrid parthenogenetic geckos of the Heteronotia binoei complex and 1 from a sexual form. These genomes included some with an arrangement typical of vertebrates and others with tandem duplications varying in size from 5.7 to 9.4 kb, each with different gene contents and duplication endpoints. These results, together with phylogenetic analyses, indicate independent and frequent origins of the duplications. Small, direct repeats at the duplication endpoints imply slipped-strand error as a mechanism generating the duplications as opposed to a false initiation/termination of DNA replication mechanism that has been invoked to explain duplications in other lizard mitochondrial systems. Despite their recent origin, there is evidence for nonfunctionalization of genes due primarily to deletions, and the observed pattern of gene disruption supports the duplication-deletion model for rearrangement of mtDNA gene order. Conversely, the accumulation of mutations between these recent duplicates provides no evidence for gene conversion, as has been reported in some other systems. These results demonstrate that, despite their long-term stasis in gene content and arrangement in some lineages, vertebrate mitochondrial genomes can be evolutionary dynamic even at short timescales.