Habitat structure and fish predation: effects on invertebrate colonisation and breakdown of stream leaf packs

1. We investigated the effects of two features of leaf‐pack habitat structure (i.e. mass of a leaf pack and surface area of leaves comprising a leaf pack) and fish predation on colonisation of shredders and leaf breakdown rates in a coldwater stream. Packs were constructed of red maple (Acer rubrum) leaves. 2. A 2 × 3 × 3 factorial experiment was used to manipulate fish predation (exclusion and control cage), leaf‐pack mass (1, 3 and 5 g dry mass) and leaf surface area (small: approx. 17.9 cm², medium: approx. 34.6 cm², large: approx. 65.6 cm²). Exclusion cages had mesh on all sides, whereas control cages lacked mesh on two sides to provide access to fish. 3. Common shredders were Gammarus pseudolimnaeus, Pycnopsyche and Lepidostoma. Shredder biomass per leaf pack increased with the mass of a leaf pack (P < 0.001), but biomass per unit mass of leaf pack did not differ with leaf‐pack mass (P = 0.506). Shredder densities did not respond to the exclusion of fish (P > 0.7) or leaf surface area (P > 0.7), and interactions among treatment factors were not significant (P > 0.2). 4. Breakdown rates were lower for leaf packs comprised of small leaves (P < 0.001) and leaf packs with high mass (P = 0.001). Excluding fish did not significantly affect leaf breakdown rates (P = 0.293), and interactions among treatment factors were not significant (P > 0.3). Breakdown rates were highest when packs consisted of few leaves (i.e. leaf packs with large leaves and low mass) and were colonised by many shredders. 5. Fish predation was not an important factor controlling shredder densities in leaf packs over the spatiotemporal scale of our experiment. Nevertheless, we found shredder colonisation was proportional to leaf‐pack mass and breakdown rates were affected by leaf‐pack size (i.e. number of leaves in a pack). We suspect that fragmentation is the primary mechanism causing the breakdown rates to be dependent on leaf‐pack size.     

Denitrification in a nitrogen-limited stream ecosystem

Denitrification was measured in hyporheic, parafluvial, and bank sediments of Sycamore Creek, Arizona, a nitrogen-limited Sonoran Desert stream. We used three variations of the acetylene block technique to estimate denitrification rates, and compared these estimates to rates of nitrate production through nitrification. Subsurface sediments of Sycamore Creek are typically well-oxygenated, relatively low in nitrate, and low in organic carbon, and therefore are seemingly unlikely sites of denitrification. However, we found that denitrification potential (C & N amended, anaerobic incubations) was substantial, and even by our conservative estimates (unamended, oxic incubations and field chamber nitrous oxide accumulation), denitrification consumed 5–40% of nitrate produced by nitrification. We expected that denitrification would increase along hyporheic and parafluvial flowpaths as dissolved oxygen declined and nitrate increased. To the contrary, we found that denitrification was generally highest at the upstream ends of subsurface flowpaths where surface water had just entered the subsurface zone. This suggests that denitrifiers may be dependent on the import of surface-derived organic matter, resulting in highest denitrification rate at locations of surface-subsurface hydrologic exchange. Laboratory experiments showed that denitrification in Sycamore Creek sediments was primarily nitrogen limited and secondarily carbon limited, and was temperature dependent. Overall, the quantity of nitrate removed from the Sycamore Creek ecosystem via denitrification is significant given the nitrogen-limited status of this stream.     

Importance of transient storage zones for ammonium and phosphate retention in a sandy-bottom Mediterranean stream

1. The ability of hyporheic sediments to exchange water and retain ammonium and phosphate in the Riera Major stream ,North-East Spain, under different discharge conditions was measured by conducting short-term nutrient and chloride additions. 2. The mean exchange coefficients from free-flowing water to the storage zone (k₁) and vice versa (k₂) were 0.82 × 10–4 s^??1 and 7 × 10^??3 s^??1, respectively. The ratio of storage zone cross-sectional area to stream cross-sectional area (A_S/A) averaged 2.8 × 10–2 and was negatively correlated with discharge (r = –0.85, d.f. = 13, P < 0.001). 3. The percentage of hyporheic zone water which came from surface water varied as a function of discharge and hyporheic depth, ranging between 33% and 95% at 25 cm depth, and between 78% and 100% at 10 cm depth. 4. The nutrient retention efficiency in the hyporheic zone at 10 cm depth measured as uptake length (S_wh) was less than 3.3 cm for ammonium and 37 cm for phosphate. Higher nutrient retentions were measured in the sediments at 10 cm depth than at 25 cm, indicating that near-surface sediments were involved more actively in phosphate retention than the deeper hyporheic sediments. The lack of ammonium at any depth of the hyporheic zone showed that ammonium was very rapidly taken up in the surfacial sediments.     

Hyporheic zone hydrology and nitrogen dynamics in relation to the streambed topography of a N-rich stream

The influence of riffle-pool units on hyporheic zone hydrology and nitrogen dynamics was investigated in Brougham Creek, a N-rich agricultural stream in Ontario, Canada. Subsurface hydraulic gradients, differences in background stream and groundwater concentrations of conservative ions, and the movement of a bromide tracer indicated the downwelling of stream water at the head of riffles and upwelling in riffle-pool transitions under base flow conditions. Channel water also flowed laterally into the floodplain at the upstream end of riffles and followed a subsurface concentric flow path for distances of up to 20 m before returning to the stream at the transition from riffles to pools. Differences in observed vs predicted concentrations based on background chloride patterns indicated that the hyporheic zone was a sink for nitrate and a source for ammonium. The removal of nitrate in the streambed was confirmed by the loss of nitrate in relation to co-injected bromide in areas of downwelling stream water in two riffles. Average stream water nitrate-N concentrations of 1.0 mg/L were often depleted to <0.005 mg/L near the sediment-water interface. Consequently, an extensive volume of the hyporheic zone in the streambed and floodplain had a large unused potential for nitrate removal. Conceptual models based mainly on studies of streams with low nutrient concentrations have emphasized the extent of surface-subsurface exchanges and water residence times in the hyporheic zone as important controls on stream nutrient retention. In contrast, we suggest that nitrate retention in N-rich streams is influenced more by the size of surface water storage zones which increase the residence time of channel water in contact with the major sites of rapid nitrate depletion adjacent to the sediment-water interface.     

The metabolism of organic matter in the hyporheic zone of a mountain stream, and its spatial distribution

Community respiration in hyporheic sediments (HCR) was studied in a characteristic riffle-pool-sequence of a mountain stream. HCR activity at the riffle site strongly exceeded that at the corresponding pool site with a mean ratio of 5.3. The vertical distribution of HCR activity was homogeneous in the pool, while there was a distinct maximum in the uppermost layer in the riffle. Similarly, the spatial distribution of certain fractions of particulate organic matter (POM), and their turnover, was largely determined by stream morphology. Mean annual HCR per unit area of stream bed was estimated as 1.71 g O₂ m⁻² d⁻¹. Hence, HCR contributes significantly to total heterotrophic activity in streams, thus enhancing the relative importance of heterotrophic processes in running waters containing hyporheic zones.     

Nitrate depletion in the riparian zone of a small woodland stream

Field enrichments with nitrate in two spring-fed drainage lines within the riparian zone of a small woodland stream near Toronto, Ontario showed an absence of nitrate depletion. Laboratory experiments with riparian substrates overlain with nitrate enriched solutions revealed a loss of only 5–8% of the nitrate during 48 h incubation at 12°C. However, 22–24% of the initial nitrate was depleted between 24 and 48 h when a second set of substrate cores was incubated at 20°C. Short-term (3 h) incubations of fresh substrates amended with acetylene were used to estimate in situ denitrification potentials which varied from 0.05–3.19 g N g^–1 d^–1 for organic and sandy sediments. Denitrification potentials were highly correlated with initial nitrate content of substrate samples implying that low nitrate levels in ground water and riparian substrates may be an important factor in controlling denitrification rates. The efficiency of nitrate removal in spring-fed drainage lines is also limited by short water residence times of < 1 h within the riparian zone. These data suggest that routes of ground water movement and substrate characteristics are important in determining nitrate depletion within stream riparian areas.     

Species aggregation: the influence of detritus in a benthic invertebrate community

Species aggregation with detritus was examined in a zoobenthic stream community. Detritus was quantified (dry weight in particle size categories) in contiguously arranged quadrats along four transects within a 40m stream section. Total organism density was found to be positively related to increasing detrital biomass (dry weight) in all transects, although the magnitude of this association was influenced by the detrital particle size distribution in each quadrat. Eliminating certain particle size categories of detritus resulted in substantial changes in the magnitude of association. For example, in one transect, total organism density and total detrital biomass showed no association. However, when one particle size category (greater than 10 mm) was removed a highly significant relationship was found. Total detrital biomass was found to be a useful predictor of organism distribution, however, inordinately high detrital biomass and variance within larger particle size categories can mask a relationship. This result suggests that the use of discrete size categories is necessary when considering species/ detrital relationships.Significant associations were found between the density of particular species and total biomass of detritus. The magnitude, as well as significance, of these associations were found to vary when correlations were calculated with restricted particle size categories of detritus. Species associations were often not consistent between transects, possibly due to local characteristics of detritus or overriding environmental factors. Current velocity was found to be unimportant in determining the detrital biomass held in the substrate. Likewise, few associations were found between current velocity and organism density in three out of four transects. Results of this study suggest that habitat selection by some taxa is influenced by local variation in detrital biomass, as well as detrital particle size composition.     

The hyporheic zone as a source of dissolved organic carbon and carbon gases to a temperate forested stream

The objective of this study was to examine chemical changes in porewaters that occur over small scales (cm) as groundwater flows through the hyporheic zone and discharges to a stream in a temperate forest of northern Wisconsin. Hyporheic-zone porewaters were sampled at discrete depths of 2, 10, 15, 61, and 183 cm at three study sites in the study basin. Chemical profiles of dissolved organic carbon (DOC), CO₂, CH₄, and pH show dramatic changes between 61 cm sediment depth and the water-sediment interface. Unless discrete samples at small depth intervals are taken, these chemical profiles are not accounted for. Similar trends were observed at the three study locations, despite each site having very different hydraulic-flow regimes. Increases in DOC concentration by an order of magnitude from 61 to 15 cm depth with a corresponding decrease in pH and rapid decreases in the molecular weight of the DOC suggest that aliphatic compounds (likely organic acids) are being generated in the hyporheic zone. Estimated efflux rates of DOC, CO₂, and CH₄ to the stream are 6.2, 0.79, 0.13 moles m² d^-1, respectively, with the vast majority of these materials produced in the hyporheic zone. Very little of these materials are accounted for by sampling stream water, suggesting rapid uptake and/or volatilization.     

Effects of atmospheric N deposition on coarse organic matter in a headwater stream

Input, storage, export potential, and system-level processing of coarse organic matter were investigated in the intermittent streams that drain the Bear Brook Watershed in Maine (BBWM). BBWM is a paired catchment study investigating ecosystem effects of atmospheric N and S deposition. We predicted that the increased N loading to the treatment catchment would elevate input of organic matter, result in higher levels of coarse organic matter biomass, and increase litter processing rates in the treatment stream relative to the reference stream. We found that the streams draining BBWM did not have statistically different coarse organic matter input, biomass, or processing rates and we found only modest differences in export potential. System-level processing rates for maple (Acer spp.) litter were similar to rates previously quantified using litterbag methods. However, system-level processing rates for American beech (Fagus grandifolia) litter were an order of magnitude faster than rates measured with litterbags. This difference was likely due to movements of these leaves from riffle/runs and pools into debris dams, rather than differences in measurements of leaf tissue processing rates between methods. Organic matter dynamics of the intermittent streams at BBWM were similar to other forested, headwater streams. Our results indicate that the long-term N manipulation experiment at BBWM has not altered input, storage or processing of coarse organic matter in the treatment stream. Physical characteristics of these stream ecosystems appear to regulate organic matter dynamics rather than differences in nutrient chemistry.     

The role of water exchange between a stream channel and its hyporheic zone in nitrogen cycling at the terrestrial-aquatic interface

The subsurface riparian zone was examined as an ecotone with two interfaces. Inland is a terrestrial boundary, where transport of water and dissolved solutes is toward the channel and controlled by watershed hydrology. Streamside is an aquatic boundary, where exchange of surface water and dissolved solutes is bi-directional and flux is strongly influenced by channel hydraulics. Streamside, bi-directional exchange of water was qualitatively defined using biologically conservative tracers in a third order stream. In several experiments, penetration of surface water extended 18 m inland. Travel time of water from the channel to bankside sediments was highly variable. Subsurface chemical gradients were indirectly related to the travel time. Sites with long travel times tended to be low in nitrate and DO (dissolved oxygen) but high in ammonium and DOC (dissolved organic carbon). Sites with short travel times tended to be high in nitrate and DO but low in ammonium and DOC. Ammonium concentration of interstitial water also was influenced by sorption-desorption processes that involved clay minerals in hyporheic sediments. Denitrification potential in subsurface sediments increased with distance from the channel, and was limited by nitrate at inland sites and by DO in the channel sediments. Conversely, nitrification potential decreased with distance from the channel, and was limited by DO at inland sites and by ammonium at channel locations. Advection of water and dissolved oxygen away from the channel resulted in an oxidized subsurface habitat equivalent to that previously defined as the hyporheic zone. The hyporheic zone is viewed as stream habitat because of its high proportion of surface water and the occurrence of channel organisms. Beyond the channel's hydrologic exchange zone, interstitial water is often chemically reduced. Interstitial water that has not previously entered the channel, groundwater, is viewed as a terrestrial component of the riparian ecotone. Thus, surface water habitats may extend under riparian vegetation, and terrestrial groundwater habitats may be found beneath the stream channel.     

Subsurface denitrification in a forest riparianzone: Interactions between hydrology and supplies ofnitrate and organic carbon

The influence of hydrology andpatterns of supply of electron donors and acceptors onsubsurface denitrification was studied in a forestriparian zone along the Boyne River in southernOntario that received high nitrogen inputs from a sandaquifer. Two hypotheses were tested: (1) subsurfacedenitrification is restricted to localized zones ofhigh activity; (2) denitrification zones occur atsites where groundwater flow paths transportNO₃ ^– to supplies of available organiccarbon. A plume of nitrate-rich groundwater withconcentrations of 10–30 mg N L^–1 flowed laterallyat depths of 1.5–5 m in sands beneath peat for ahorizontal distance of 100–140 m across the riparianzone to within 30–50 m of the river. In situ acetyleneinjections to piezometers revealed that significantdenitrification was restricted to a narrow zone ofsteep NO₃ ^– and N₂O decline at theplume margins. The location of these denitrificationsites in areas with steep gradients of groundwater DOCincrease supported hypothesis 2. Many of thesedenitrification hotspots occurred near interfacesbetween sands and either peats or buried river channeldeposits. Field experiments involving in situadditions of either glucose or NO₃ ^– topiezometers indicated that denitrification wasC-limited in a large subsurface area of the riparianzone, and became N-limited beyond the narrow zone ofNO₃ ^– consumption. These data suggest thatdenitrification may not effectively removeNO₃ ^– from groundwater transported at depththrough permeable riparian sediments unlessinteraction occurs with localized supplies of organicmatter.     

An analysis of changes in the invertebrate community along a southern New Zealand montane stream

Changes in benthic community structure at four sites along a flood-prone montane stream continuum in the South Island of New Zealand were analysed using rank correlation (Kendall's Tau and Spearman's r_s) and a community similarity index (S_c) developed initially for stream pollution assessment. Species richness was highest in a forested headwater stream, which is attributed to its relatively greater physical stability and habitat heterogeneity. Community similarity decreased with distance apart, and pairs of open and forested sites showed the greatest similarity. Species composition and relative abundance along the continuum changed least in the numerically dominant Ephemeroptera and Plecoptera, groups in which several species had broad habitat requirements. In contrast, a number of dipteran and trichopteran species had more restricted distributions. The more specialised niche requirements of some species in these orders are attributed to their generally small size, their ability to spin silk, and their holometabolous development. Physical rather than biological factors appeared to limit the distributions of most invertebrates, and there was little evidence of ecological segregation by either food resource partitioning or differences in life history patterns amongst many closely related species. Theories that stream communities are well ordered entities maximising the efficiency of energy utilisation cannot realistically be applied to such unstable stream systems.     

All creatures great and small: patterns in the stream benthos across a wide range of metazoan body size

SUMMARY 1. The whole metazoan community (i.e. including the meiofauna) of an acidic, fishless stream in south-east England was surveyed over 14 months between March 1999 and April 2000. Invertebrate density, biomass and taxonomic richness were assessed on each sampling occasion in relation to physico-chemical variables.
2. The meiofauna were more numerous and diverse than the macrofauna, while their total biomass occasionally equalled that of the macrofauna.
3. The meiofaunal and macrofaunal assemblages appeared to respond to different environmental factors. The meiofauna showed genuine species turnover through the year, while the macrofauna varied less in taxonomic composition though there were substantial variations in density.
4. These data suggest that the meiofauna and macrofauna exist at different temporal and spatial scales and perceive their environment with a different 'grain'.     

Biological,chemical and physical characteristics of downwelling and upwelling zones in the hyporheic zone of a north-temperate stream

Along a single stream riffle, there is a typical flow pattern in which surface water enters the hyporheic zone in a downwelling zone at the head of the riffle and hyporheic water returns to the stream surface in an upwelling zone at the tail of the riffle. Distinct patterns of physical and chemical conditions in the hyporheic zone are likely to determine patterns of microbial activity and occurrence of hyporheic fauna. Interstitial water and core samples were taken at three depths in the downwelling and upwelling zones of a single riffle in the Speed River, Southern Ontario, Canada. Physical and chemical characteristics of the hyporheic water, bacterial density, protein content, detritus content and faunal composition of the hyporheic sediment were analysed. The downwelling and upwelling zones differed significantly in temperature, pH, redox potential, dissolved oxygen and nitrate with significant positive correlations occurring among the latter three. There were no differences in bacterial density or detritus content between the two zones nor between depths in either zone, but protein content, considered to be a measure of biofilm biomass, was significantly higher in the downwelling zone. Total density of hyporheic fauna and the number of taxa decreased with increasing depth in both upwelling and downwelling zones, and were positively correlated with surface water characteristics (oxygen, temperature and nitrate), sediment protein content and detritus; however, only a weak correlation was found with zone. The composition of taxa differed between the two zones, and faunal distribution was correlated with dissolved oxygen, detritus, protein content and depth.     

Consumption of leaf detritus by a stream shredder: Influence of tree species and nutrient status

Four species of riparian vegetation (alder, birch, willow and poplar) were fertilized with nitrogen, phosphorus, nitrogen + phosphorus, or no fertilizer (control). The resulting leaf detritus (leached but not microbially colonized) was offered to a stream shredder, Hydatophylax variabilis (Trichoptera: Limnephilidae). In one experiment, shredder consumption of leaf detritus from different nutrient treatments (within tree species) was compared, and in a second experiment, consumption of different tree species (within nutrient treatments) was compared. Larvae preferred leaf detritus from nitrogen + phosphorus treatments (except in poplar where nitrogen treatment was preferred). Alder was preferred over other tree species for all treatments. Chemical and physical analyses of leaf litter showed differences between tree species and nutrient treatments in nutrient content, tannins and leaf toughness. Leaf consumption by larvae was positively associated with nitrogen content and negatively associated with condensed tannin content. Species composition and nutrient status of riparian vegetation may strongly influence detrital food webs in streams.     

The three dimensional distribution of the fauna in a single riffle in a stream in Ontario

The surface and hyporheic fauna of a riffle area in Salem Creek near Elmira, Ontario, was investigated with a Surber and a corer sampler. A stratified random sampling design estimated the number of invertebrates at 154 561 (109 805–224 155) m^–2 in June and at 64 407 (40 905–97 996) m^–2 in October with more than 70% of the animals occurring below 5 cm. There was a great spatial variation of the hyporheos density in the three dimensions of the riffle, which seemed to be related mostly to hydrogeological characteristics (superficial groundwater flow and grain size). Upward water movement in the centre of the stream occurred in the upper two transects, especially from the upper right bank, while the lower transect showed little water transmission. Hyporheos composition is discussed in regard to life history and the input of organic materials. Only two of nine pairs of Surber samples showed a high degree of similarity (0.68, 0.81). The surficial spatial density and diversity were examined in relation to the available surface and to substrate heterogeneity. It is concluded that the great variations between samples caused by many factors present severe problems in the collection of reliable quantitative samples.

---

Résumé La faune de surface et celle de l'hyporhélique d'un radier de Salem Creek près d'Elmira, Ontario, ont été étudiées à l'aide de l'échantillonneur de Surber et d'un carottier. Un échantillonnage aléatoire stratifié a permis d'estimer le nombre d'invertébrés a 154 561 (109 805–224 155) m^–2 en juin et à 64 407 (40 905–97 996) m^–2 en octobre. Environ 70% de la faune benthique a été retrouvée entre 5 et 65 cm. La densité de l'hyporhéos présente de grandes variations spatiales, et celles-ci semblent etre reliées aux caractéristiques hydrogéologiques (mouvement des eaux souterraines superficielles et taille des particules). Un net mouvement ascendant dirigé vers le centre du radier a été détecté dans les deux transects situés en amont; aucun mouvement n'a été mesuré dans un troisième transect situé an aval. La composition de l'hyporhéos est mise en relation avec les cycles vitaux et avec l'apport des matières organiques. Des 9 paires d'échantillons recueillis au Surber, deux seulement présentent un certain degré de similarité (0.68, 0.81). Les variations spatiales de la densité et de la diversité de la faune de surface furent mises en corrélation avec la surface disponible et l'hétérogénéité du substrat. On en conclu que la grande variabilité entre les échantillons dans les deux habitats est due à plusieurs facteurs et qu'elle pose de sérieux problèms pour l'estimation de paramètres quantitatifs.

     

Decomposition and colonisation by invertebrates of native and exotic leaf material in a small stream in New England (Australia)

In many parts of south-eastern Australia, native riparian vegetation has been cleared and exotic willows planted. In order to evaluate some of the possible effects of this practice, the decomposition and colonisation by invertebrates of the leaves of three native plant species along with those of willow were examined.Decomposition of leaves of the willow Salix babylonica L. and the indigenous macrophyte Myriophyllum propinquum A. Cunn. was much faster than for leaves of the indigenous trees Eucalyptus blakelyi Maiden and Casuarina cunninghamiana Miq. Both macroinvertebrates and current were found to have a significant influence upon decomposition. The pattern of preferential colonisation suggested that plant detritus represented a primary food source for invertebrates and not simply a refuge. Colonisation was found to be a function of the stage of decomposition, regardless of plant species. The lower temporal availability of willow leaves compared to the native evergreen tree leaves appears to be insufficient to enhance the production of the benthic macroinvertebrates.     

The influence of abiotic factors and density-dependent mechanisms on between-year variations in a stream invertebrate community

Samples of invertebrates were taken in two seasons (October and April) over 5 years in a trout stream in Belgium. Diversity, total benthic invertebrate density, and densities of 27 of 34 taxa tested showed significant differences between years. Significant seasonal effects and interactions were observed in 18 and 7 taxa respectively. The most common pattern of between-year variation was related to hydrological events (flooding) which caused low densities for many species. Most species recovered rapidly, but the recovery of some predators seemed to show a delay of one year. The amphipod Gammarus fossarum appeared to respond positively to flooding as well as to certain post-flood conditions. A significant positive correlation between mortality and the logarithm of initial density was obtained for 6 of 11 species tested. The relationships between mortality and abiotic factors such as water temperature, mean and maximum water level, were very poor. A hierarchy of environmental factors in the regulation of stream macroinvertebrate populations is suggested with: (1) exceptional abiotic events acting in a density-independent manner; and (2) biotic factors that may account for density-dependent regulation.     

Bacterial community dynamics in the hyporheic zone of an intermittent stream

The dynamics of in situ bacterial communities in the hyporheic zone of an intermittent stream were described in high spatiotemporal detail. We assessed community dynamics in stream sediments and interstitial pore water over a two-year period using terminal-restriction fragment length polymorphism. Here, we show that sediments remained saturated despite months of drought and limited hydrologic connectivity. The intermittency of stream surface water affected interstitial pore water communities more than hyporheic sediment communities. Seasonal changes in bacterial community composition was significantly associated with water intermittency, phosphate concentrations, temperature, nitrate and dissolved organic carbon (DOC) concentrations. During periods of low- to no-surface water, communities changed from being rich in operational taxonomic units (OTUs) in isolated surface pools, to a few OTUs overall, including an overall decline in both common and rare taxa. Individual OTUs were compared between porewater and sediments. A total of 19% of identified OTUs existed in both porewater and sediment samples, suggesting that bacteria use hyporheic sediments as a type of refuge from dessication, transported through hydrologically connected pore spaces. Stream intermittency impacted bacterial diversity on rapid timescales (that is, within days), below-ground and in the hyporheic zone. Owing to the coupling of intermittent streams to the surrounding watershed, we stress the importance of understanding connectivity at the pore scale, consequences for below-ground and above-ground biodiversity and nutrient processing, and across both short- and long-time periods (that is, days to months to years).