Flash flooding resistance of rice genotypes of Oryza sativa L., O. glaberrima Steud., and Interspecific hybridization progeny

In the costal area and inland valleys of Guinea, flash floods occur frequently following heavy rain during the rainy season. Young rice seedlings are particularly vulnerable to submergence stress due to insufficient height and carbohydrate reserves. In an attempt to characterize the physiological responses of young seedlings to flash flood, a wide genetic base including O. sativa, O. glaberrima, and interspecific hybridization progenies (IHP) was used.

Twelve day-old seedlings were submerged for 7 days, and plant height, dry matter accumulation (DMA), and lodging were measured. Upland rice (O. sativa) showed greater shoot elongation, larger reduction in DMA during submergence, and higher lodging, which lead to low flash flooding resistance (FFR). The physiological traits of most O. glaberrima and upland rice (O. sativa) to flash flood were opposite to those of submergence tolerant cultivars, as evidenced from the results of a principal component analysis. The physiological response of Saligbeli was different to other O. glaberrima genotypes in terms of FFR. Saligbeli exhibited enhanced shoot elongation with the increase in DMA during submergence. These features seemed to be a unique way to cope with submergence. Some IHP adapted to lowland cultivation showed traits similar to Saligbeli. The vigorous growth of Saligbeli and IHP underwater should be further investigated for improving FFR in rice.     

Genetic structure of three Oryza AA genome species (O. rufipogon, O. nivara and O. sativa) as assessed by SSR analysis on the Vientiane Plain of Laos

Microsatellite (SSR) markers can reveal a high level of polymorphic loci, and are increasingly being used in population genetic structure studies. On the Vientiane plain of Laos all components of the rice crop complex exist, wild annual (O. nivara), wild perennial (O. rufipogon) and weedy relatives of rice as well as rice itself. To understand gene flow in the rice complex, the genetic structures of O. rufipogon (10 populations), O. nivara (10 populations) and O. sativa (24 samples) from across the Vientiane Plain, Laos, were compared. Higher genetic differentiation was detected among O. nivara populations (G _ST = 0.77, R _ST = 0.71) than O. rufipogon populations (G _ST = 0.29, R _ST = 0.28), whereas genetic diversity for all populations of these two wild species showed similar values (H _T = 0.77 and 0.64 in O. rufipogon and O. nivara, respectively). Based on neighbor-joining tree constructed on the basis of genetic distance (D _A), three genetic clusters were detected, corresponding to (1) O. sativa samples, (2) O. nivara populations and (3) O. rufipogon populations. Pairwise tests confirmed the genetic differentiation of the three species. Although none of the wild rice individuals used in this study had any cultivated-specific phenotypic traits, genetic admixture analysis detected more than 10% O. sativa membership in three O. rufipogon and one O. nivara populations, indicating that O. sativa alleles may cryptically persist in natural populations of O. rufipogon and O. nivara on the Vientiane Plain.     

Biochemical systematics of two sibling species of polychaete annelids: Ophelia bicornis and O. radiata

Biochemical analysis of polychaete annelids from the English Channel and the Atlantic Coast has shown that they represent two genetically isolated species, Ophelia bicomis and O. radiata, characterized by different alleles at four loci and a mean number of 15 and 14 pairs of gills, respectively. Sampling of Mediterranean annelids was insufficient to determine whether or not the population studied belongs to the O. radiata species.     

崖壁植物太行菊与长裂太行菊全基因组大小及特征分析北大核心CSCD

太行菊(Opisthopappus taihangensis)、长裂太行菊(O.longilobus),为太行山特有多年生崖壁草本植物,菊科(Compositae)重要野生资源,具有较高的经济与生态价值。为确定适合两物种的全基因组测序策略,该研究利用流式细胞法和高通量测序技术,分析两物种基因组大小、杂合率、重复序列及GC含量等信息。结果表明:(1)流式细胞法估算太行菊基因组大小约为2.1 Gb,长裂太行菊基因组大小约为2.4 Gb。(2)高通量测序修正后太行菊基因组大小为3.13 Gb,重复序列比例为84.35%,杂合度为0.99%,GC含量为36.56%;长裂太行菊基因组为3.18 Gb,重复序列比例为83.83%,杂合度为1.17%,GC含量为36.62%。(3)初步组装后GC含量分布及平均深度存在异常,出现分层现象,可能是两物种基因组杂合率较高所致。综上结果表明,太行菊、长裂太行菊均属于高重复、高杂合、大基因组的复杂基因组,建议使用Illumina+PacBio测序组装策略,进行全基因组测序分析。     

具有杀线虫活性的郭霍氏芽孢杆菌发酵条件优化及稳定性评价

【背景】芽孢杆菌是一类常见的生防菌,在植物病害防治中展现出巨大潜力。【目的】对一株具有杀线虫活性的郭霍氏芽孢杆菌(Bacillus kochii) DDWB进行发酵条件优化和稳定性评价,为菌株的开发提供理论支持。【方法】以发酵液上清杀线虫率及细菌发酵液OD600值为指标,通过单因素法与正交试验设计,对菌株的培养基与发酵参数进行优化;同时对菌株发酵液酸碱、温度、紫外、遗传及储存稳定性进行评价。【结果】DDWB菌株培养基优化后为:蔗糖2%,酵母提取物1%,氯化钾2%;优化后初始pH值为8.0,装液量为150 mL/250 mL锥形瓶,发酵时间为48h,接种量为8%,转速为160r/min,发酵温度为31℃;稳定性测定结果显示发酵液对酸碱敏感,紫外光照射4 h后活性物质发生降解,但发酵液对温度不敏感且杀线虫活性相关基因可稳定遗传。【结论】本研究优化了DDWB菌株的发酵条件,并对发酵液中活性物质的稳定性进行了多因素评价,使得菌株可以快速扩繁并长期稳定保持对根结线虫的抑制活性,为进一步评价菌株田间防效和研究生防机制奠定了基础。     

Serological and genetic analysis of a rare CisAB01/O01 blood group

The paper aims to analyze a rare blood sample in Ganzhou City Hospital with CisAB subtype and explore a feasible pattern for blood typing of rare blood type patients, so as to ensure clinical transfusion safety. The routine serological methods were used for ABO forward and reverse blood typing and the fluorescence real-time PCR technique was used for sample genotyping. A human ABO blood group 6-7 exon sequencing kit was used for sequence analysis. The nucleic acid sequence of the sample was compared with reference sequences. The forward typing results demonstrated that the sample was ABw, RhD positive. The sample exhibited 4+ agglutination with anti-H and anti-AB antibodies. Reverse typing by microcolumn gel method showed an AB result, but the serum sample demonstrated weak agglutination with B cell under room temperature, 4 °C and 37 °C in saline when tested with tube method respectively. The serological results matched with the A₂B₃ serotype. The fluorescent real-time PCR genotyping results displayed A/O01. The sequence analysis demonstrated deletion of guanine in 261-position 467C>T (heterozygote) and 803G>T (heterozygote) mutation respectively. The mutation caused the A glycosyltransferase peptide chain to change from proline to leucine (P156L) at 156 and from glutamate to alanine (G268A) at 268. The result demonstrated that the sample''s genotype was CisAB01/O01. The mutation of glycosyltransferase coding gene leads to an abnormal serological reaction pattern. Only by combining the results of genetic analysis can we get the true sample blood type and better ensure the safety of clinical blood transfusion.     

帕米尔木灵藓和细齿木灵藓（木灵藓科）的形态特征及其在中国的新分布

该文报道了采自新疆的木灵藓属中国2个新记录种——帕米尔木灵藓(Orthotrichum pamiricum)和细齿木灵藓(O.scanicum)。帕米尔木灵藓的识别特征为:叶尖钝,气孔隐型,多着生于孢蒴下部,外齿层齿片8对,干燥时蒴齿背曲,内齿层蒴条16,上部内曲;细齿木灵藓的识别特征为:叶尖部具细齿,气孔半隐型,蒴帽具分散的透明毛,内齿层和外齿层均16片,具8条黄色细沟,干燥时中部以上具沟。对这2种藓类的形态特征、生境和地理分布及与其相似种的形态学进行了比较分析,并绘制了每种的形态结构墨线图。木灵藓属植物在中国的新分布记录进一步表明,新疆地区富含生物多样性,并与中亚植物区系存在密切关系。     

Characterization of a highly stable trypsin-like proteinase inhibitor from the seeds of Opuntia streptacantha (O. streptacantha Lemaire)

A trypsin inhibitor from Opuntia streptacantha Lemaire (Prickly pear) seeds was purified and characterized. Of several proteases tested, this inhibitor showed specificity to trypsin-like enzymes. The major inhibitor present in these seeds showed distinctive characteristics, most notably a low molecular weight of 4.19 kDa, as determined by MALDI TOF, and an unusually high thermal stability, retaining most of the activity after heating the sample 1 h to 120 °C with a pressure of 1 kg/cm². Its complete amino acid sequence was obtained through mass spectrometry, this establishing presence a blocked N-terminal region. When comparing its sequence in the MEROPS database for peptidases and peptidase inhibitors, it showed 34.48% identity with a serine-proteinase inhibitor from the I15 family.     

Zur feldornithologischen Unterscheidung der GimpelrassenPyrrhula p. minor undpyrrhula

Ohne Zusammenfassung     

UeberDrepanornis Albertisi Scl.,Trichoglossus Josefinae Finsch undTrichoglossus Wilhelminae nov. sp

Ohne Zusammenfassung     

Three new asexual arthroconidial yeasts, Geotrichum carabidarum sp. nov., Geotrichum histeridarum sp. nov., and Geotrichum cucujoidarum sp. nov., isolated from the gut of insects

Twenty arthroconidial yeasts were isolated from the digestive tract of basidiome-feeding beetles and lepidopteran larvae. All of the yeasts reproduced only asexually by arthroconidia and some by endo- or blastoconidia as well. Based on the comparisons of sequences in ribosomal RNA genes and other taxonomic characteristics, the yeasts were identified as three unknown Geotrichum species. The three new species are described as Geotrichum carabidarum (NRRL Y-27727^T), G. histeridarum (NRRL Y-27729^T), and G. cucujoidarum (NRRL Y-27731^T). Phylogenetic analyses from ribosomal DNA sequences showed that members of the genus Geotrichum and related arthroconidial yeast taxa were divided into two major clades: (1) Dipodascus and Galactomyces with Geotrichum anamorphs including all the new species; and (2) Magnusiomyces with Saprochaete anamorphs. G. cucujoidarum formed a subclade with G. fermentans and Geotrichum sp. Y-5419, while the two closely related species, G. carabidarum and G. histeridarum, represent a new basal subclade in the clade of Geotrichum and its teleomorphs.