Water level fluctuations and dynamics of amphibious plants at Lake Constance: Long-term study and simulation

Inundations of lakeshores are classical examples of how disturbance can influence community diversity and composition. As the occurrence and intensity of flooding are predicted to change dramatically as a result of climate change, predicting the consequences of such changes has become a major task for community ecology. Here we present abundance data of five species that comprise a species-poor community of high conservation value at lakeshores of Lake Constance over 17 years, during which one of the longest flood periods and the lowest water levels since 1890 occurred. We used simple regression models and increasingly sophisticated Markov chain models plus non-linear parameter estimation to put down abundance changes to direct effects of flooding on population-dynamic parameters and to indirect effects of flooding through modification of interspecific competition. We found a negative effect of flood duration on abundance changes for the non-specialist species Agrostis stolonifera and Phalaris arundinacea, but no effect on Carex acuta. The specialist species, Ranunculus reptans but not Littorella uniflora showed a positive effect of flooding. Data analysis revealed an unambiguous competitive hierarchy with the two graminoid species (C. acuta, P. arundinacea) being superior, and the habitat specialists being most sensitive to interspecific competition. We used estimated parameters to project the community dynamics under different flooding regimes. Long-term projection showed that the original community is threatened by two non-specialist species (C. acuta and P. arundinacea). Even if this forecast was influenced by various model limitations, it may indicate irreversible changes in soil fertility during the phase of high eutrophication between 1950 and 1980. Our study demonstrated that long-term abundance relevés combined with Markov modelling and predictive simulations are an important counterpart to detailed short-term studies. The combination of empirical and theoretical methods elucidates the interaction of biotic and abiotic factors in community change.     

Nanostructure of cationic lipid-oligonucleotide complexes

Complexes (lipoplexes) between cationic liposomes and single-strand oligodeoxynucleotides (ODN) are potential delivery systems for antisense therapy. The nanometer-scale morphology of these assemblies is relevant to their transfection efficiency. In this work the monocationic lipid dioleoyloxytrimethylammoniumpropane, the neutral "helper" lipid cholesterol, and an 18-mer anti-bcl2 ODN were combined at different ratios. The lipoplexes formed were characterized for the quantity of ODN bound, for the degree of lipid mixing, and for their size. The nanostructure of the system was examined by cryogenic-temperature transmission electron microscopy, augmented by small-angle x-ray scattering. Addition of ODN to cationic liposomes induced both liposome aggregation and the formation of a novel condensed lamellar phase. This phase is proposed to be stabilized by anionic single-strand ODN molecules intercalated between cationic bilayers. The proportion of cholesterol present apparently did not affect the nature of lipoplex microstructure, but changed the interlamellar spacing.     

Nanostructure of the fibrin clot

The nanostructure of the fibrin fibers in fibrin clots is investigated by using spectrometry and small angle x-ray scattering measurements. First, an autocoherent analysis of the visible light spectra transmitted through formed clots is demonstrated to provide robust measurements of both the radius and density of the fibrin fibers. This method is validated via comparison with existing small-angle and dynamic light-scattering data. The complementary use of small angle x-ray scattering spectra and light spectrometry unambiguously shows the disjointed nature of the fibrin fibers. Indeed, under quasiphysiological conditions, the fibers are approximately one-half as dense as their crystalline fiber counterparts. Further, although the fibers are locally crystalline, they appear to possess a lateral fractal structure.     

Nanostructure and nanomechanics of live Phaeodactylum tricornutum morphotypes

The ultrastructure and mechanical properties of the fusiform, triradiate and ovoid morphotypes of Phaeodactylum tricornutum were investigated using atomic force microscopy. Using topographic imaging, we showed that the surface of the ovoid form is rougher than those of the two other specimens, and coated with an outer layer of extracellular polymers. Using spatially resolved force–indentation curves, we found that the valve of the ovoid form is about five times stiffer (Young modulus of ∼500 kPa) than those of the other forms (∼100 kPa), a finding fully consistent with the fact that only the ovoid form has a silica valve, whereas the valves in the other two consist mostly of organic material. Notably, the girdle region of both fusiform and ovoid forms was five times softer than the valve, suggesting that this region is poor in silica and enriched in organic material. For the triradiate form, we showed the arms to be softer than the core region, presumably as a result of organelle localization. Last, we observed mucilaginous footprints of moderate stiffness (∼100 kPa) in the vicinity of ovoid diatoms, which we believe are secreted extracellular polymers.     

Water table fluctuations and groundwater supply are important in preventing phosphate-eutrophication in sulphate-rich fens: Consequences for wetland restoration

Nitrate leaching from agricultural land leads to oxidiation of FeS _x in FeS _x -containing subsoils resulting in SO ₄ ²⁻ mobilisation. Pollution of the groundwater with SO ₄ ²⁻ causes a higher availability of o-PO ₄ ³⁻ , eutrophication and loss in biodiversity in groundwater fed fens with stagnating surface water. Under natural conditions, fens along the river Meuse are continuously fed by groundwater that besides SO ₄ ²⁻ mostly also contains high concentrations of NO ₃ ⁻ and bivalent cations (Ca²⁺ and mg²⁺). During summer groundwater input is restricted resulting in periodic drought. Under these conditions no SO ₄ ²⁻ induced o-PO ₄ ³⁻ eutrophication occurs. Periodic drought and a high discharge of NO ₃ ⁻ , have a strong effect on S and P biogeochemistry in sulphate-rich fens. NO ₃ ⁻ inhibits SO ₄ ²⁻ reduction and concomitant o-PO ₄ ³⁻ mobilisation in fen sediments by being an energetically more favourable electron acceptor. In addition, NO ₃ ⁻ is capable of oxidising reduced Fe compounds, including FeS _x , increasing the amount of oxidised Fe in the sediment capable of binding o-PO ₄ ³⁻ . Periodic drought is important in reincreasing the concentration of oxidised Fe in the top layer of S-rich sediments preventing o-PO ₄ ³⁻ mobilisation and an undesirable vegetation development. Damming of surface water, in order te restore desiccated sulphate-rich fens, prevents periodic drought and decreases groundwater input. This leads to NO ₃ ⁻ depletion, stimulation of SO ₄ ²⁻ reduction, Fe depletion, o-PO ₄ ³⁻ mobilisation and, in contrast to what was hoped for, in massive growth of algae, lemnids and fast growing wetland grasses. Therefore discharge of NO ₃ ⁻ – rich groundwater and the fluctuation of the water table are vital for succesful restoration of desiccated sulphate-rich fens. Successful rewetting of these type of fens, without causing stagnation of surface water and without preventing periodic drought, can be achieved by raising the water table to levels below the potential groundwater table using a controllable dam.     

Nanostructure Initiator Mass Spectrometry for tissue imaging in metabolomics: future prospects and perspectives

Mass spectrometry-based metabolomics provides a new approach to interrogate mechanistic biochemistry related to natural processes such as health and disease. Physiological and pathological conditions, however, are characterized not only by the identities and concentrations of metabolites present, but also by the location of metabolites within a tissue. Unfortunately, most relevant MS platforms in metabolomics can only measure samples in solution, therefore metabolites are typically extracted by tissue homogenization. Recent developments of imaging-MS technologies, however, have allowed particular metabolites to be spatially localized within biological tissues. In this context, Nanostructure-Initiator Mass Spectrometry (NIMS), a matrix-free technique for surface-based analysis, has proven an alternative approach for tissue imaging of metabolites. Here we review the basic principles of NIMS for tissue imaging and show applications that can complement LC/MS and GC/MS-based metabolomic studies investigating the mechanisms of fundamental biological processes. In addition, the new surface modifications and nanostructured materials herein presented demonstrate the versatility of NIMS surface to expand the range of detectable metabolites.     

Water loss and malate fluctuations during the day for plants in the southern Namib desert

Summary The daily course of transpiration for 12 different plants growing in the southern Namib desert was investigated. Sclerophyllous species with C₃ photosynthesis were the most effective water savers followed by succulents exhibiting CAM, while C₃ pathway-succulents lose as much water as malacophyllous species. The different species showed either one or two peaked patterns of both transpiration and leaf conductance. With C₃ plants the most common pattern is a single morning peak in leaf conductance followed by decreases in conductance over the remainder on the day. With CAM succulents leaf conductance is high in the morning, shows a pronounced midday depression and increases in the early afternoon when the malate pool is depleted, but malate consumption did not start earlier than 4 h after dawn. Seven of nine investigated C₃ plants had rather high contents of malate, up to 180 mol·g^-1 dry matter. In these plants the malate content increased with increasing leaf conductance and disappeared when leaf conductance declined in the evening, indicating that malate was synthesized during photosynthesis.Dedicated to Prof. Dr. O.H. Volk (Würzburg) for his 80th birthday     

Fabrication of Large-scale Nanostructure by Langmuir-Blodgett Technique

Monolayer of polymer latex spheres was prepared at the air/water interface and deposited onto glass slides through Langmuir-Blodgett （LB） technique. Large-scale, high quality hexagonally close-packed domains were found in scanning electron microscopic pictures. Details of the monolayer-forming ability were discussed. Suitable surface characteristics of the colloidal particles, especially the hydrophilic and hydrophobic properties, are the keys for the formation of ordered monolayer films. The film can be transferred onto various kinds of substrates, even high curvature surface articles, such as fibers, decorations etc, can also be used as substrates. The advantages of this fabrication method of polymer latex spheres monolayer are fast, flexible, simple and very neat.     

Metformin-Loaded Hyaluronic Acid Nanostructure for Oral Delivery

The objective of this study was to develop a nanodelivery system containing a mucoadhesive polymer hyaluronic acid (HA) for oral delivery. Metformin was used as a model drug. Blank and drug-loaded HA nanostructures were prepared by precipitation method and characterized for particle size (PS), zeta potential (ZP), physical stability (over 65 days), surface morphology, moisture content, and physical state of the drug in the nanostructures. The cytotoxicity and hemolysis potential of the delivery system was assessed in Caco-2 cells and whole human blood, respectively. The in vitro release of metformin and its uptake in Caco-2 cells was evaluated using high-performance liquid chromatography. Ex vivo permeability of metformin was measured through goat intestinal membrane. The nanoparticles were physically stable and neutrally charged with an average PS of 114.53?±?12.01 nm. This nanodelivery system existed as nanofibers containing metformin in a crystalline state. This delivery system released the drug rapidly with >?50% of metformin released within 1 h. Cellular uptake studies on Caco-2 cells indicated higher uptake of metformin from nanoparticle as compared to metformin in solution, up to first 45 min. Ex vivo permeability studies on the other hand showed a higher metformin permeability from solution relative to that from nanoparticles through the goat intestinal membrane. Metformin nanoparticles were non-toxic at therapeutic concentrations in Caco-2 cells and showed no hemolytic effect to RBCs. This study indicates the preparation, characterization, as well as the potential use of HA nanostructures for oral delivery.     

Nanostructure analysis using spatially modulated illumination microscopy

We describe the usage of the spatially modulated illumination (SMI) microscope to estimate the sizes (and/or positions) of fluorescently labeled cellular nanostructures, including a brief introduction to the instrument and its handling. The principle setup of the SMI microscope will be introduced to explain the measures necessary for a successful nanostructure analysis, before the steps for sample preparation, data acquisition and evaluation are given. The protocol starts with cells already attached to the cover glass. The protocol and duration outlined here are typical for fixed specimens; however, considerably faster data acquisition and in vivo measurements are possible.     

Nanostructure and nanomechanics analysis of lymphocyte using AFM: From resting,activated to apoptosis

The ultrastructural and mechanical properties of single resting, activated and apoptosis lymphocyte have been investigated by atomic force microscopy (AFM). Using topographic imaging, we showed that the surface of the resting lymphocyte is smooth, while lymphocyte activation and apoptosis are often accompanied by changes in cell morphology. The apoptosis lymphocyte is rougher than those of the two other morphotypes, and coated with many big particles. Using spatially resolved force–distance curves, we found that the valve of the activated lymphocyte is about two to three times stiffer (Young's modulus of ～20 kPa) than those of the two other morphotypes (5–11 kPa). These results can improve our understanding of the mechanical properties of cells during growth and differentiation.     

Nanostructure predicts intraspecific variation in ultraviolet-blue plumage colour

Evidence suggests that structural plumage colour can be an honest signal of individual quality, but the mechanisms responsible for the variation in expression of structural coloration within a species have not been identified. We used full-spectrum spectrometry and transmission electron microscopy to investigate the effect of variation in the nanostructure of the spongy layer on expression of structural ultraviolet (UV)-blue coloration in eastern bluebird (Sialia sialis) feathers. Fourier analysis revealed that feather nanostructure was highly organized but did not accurately predict variation in hue. Within the spongy layer of feather barbs, the number of circular keratin rods significantly predicted UV-violet chroma, whereas the standard error of the diameter of these rods significantly predicted spectral saturation. These observations show that the precision of nanostructural arrangement determines some colour variation in feathers.     

Numerical Design Methods of Nanostructure Array for Nanobiosensing

Numerical methods are very important for designing nanodevices since localized surface plasmon resonance is sensitive to the geometric parameters. Especially, as for nano-biosensor, the proper choice of design tool is very critical in terms of the accuracy and simulation time. In this paper, we compare the discrete dipole approximation (DDA) with the finite integration technique (FIT) of the full-wave electromagnetic commercial software (CST Microwave Studio) in worldwide use with popularity. The refractive index sensitivity of rhombic hybrid Au–Ag nanostructures is calculated and compared in visible wavelength using DDA and FIT. Comparing the calculated results, the DDA has two advantages over the FIT: easy control of geometric parameter and less simulation time without compromising the accuracy. The limitations of the DDA will be deliberated as well.     

Cytoskeleton dynamics: fluctuations within the network

Out-of-equilibrium systems, such as the dynamics of a living cytoskeleton (CSK), are inherently noisy with fluctuations arising from the stochastic nature of the underlying biochemical and molecular events. Recently, such fluctuations within the cell were characterized by observing spontaneous nano-scale motions of an RGD-coated microbead bound to the cell surface [Bursac et al., Nat. Mater. 4 (2005) 557-561]. While these reported anomalous bead motions represent a molecular level reorganization (remodeling) of microstructures in contact with the bead, a precise nature of these cytoskeletal constituents and forces that drive their remodeling dynamics are largely unclear. Here, we focused upon spontaneous motions of an RGD-coated bead and, in particular, assessed to what extent these motions are attributable to (i) bulk cell movement (cell crawling), (ii) dynamics of focal adhesions, (iii) dynamics of lipid membrane, and/or (iv) dynamics of the underlying actin CSK driven by myosin motors.     

Nanostructure and elastic modulus of single trabecula in bovine cancellous bone

We aimed to investigate the elastic modulus of trabeculae using tensile tests and assess the effects of nanostructure at the hydroxyapatite (HAp) crystal scale on the elastic modulus. In the experiments, 18 trabeculae that were at least 3 mm in length in the proximal epiphysis of three adult bovine femurs were used. Tensile tests were conducted using a small tensile testing device coupled with microscopy under air-dried condition. The c-axis orientation of HAp crystals and the degree of orientation were measured by X-ray diffraction. To observe the deformation behavior of HAp crystals under tensile loading, the same tensile tests were conducted in X-ray diffraction measurements. The mineral content of specimens was evaluated using energy dispersive X-ray spectrometry. The elastic modulus of a single trabecula varied from 4.5 to 23.6 GPa, and the average was 11.5±5.0 GPa. The c-axis of HAp crystals was aligned with the trabecular axis and the crystals were lineally deformed under tensile loading. The ratio of the HAp crystal strain to the tissue strain (strain ratio) had a significant correlation with the elastic modulus (r=0.79; P<0.001). However, the mineral content and the degree of orientation did not vary widely and did not correlate with the elastic modulus in this study. It suggests that the strain ratio may represent the nanostructure of a single trabecula and would determine the elastic modulus as well as mineral content and orientation.     

Cellular motions and thermal fluctuations: the Brownian ratchet.

We present here a model for how chemical reactions generate protrusive forces by rectifying Brownian motion. This sort of energy transduction drives a number of intracellular processes, including filopodial protrusion, propulsion of the bacterium Listeria, and protein translocation.