Water level fluctuations and dynamics of amphibious plants at Lake Constance: Long-term study and simulation

Inundations of lakeshores are classical examples of how disturbance can influence community diversity and composition. As the occurrence and intensity of flooding are predicted to change dramatically as a result of climate change, predicting the consequences of such changes has become a major task for community ecology. Here we present abundance data of five species that comprise a species-poor community of high conservation value at lakeshores of Lake Constance over 17 years, during which one of the longest flood periods and the lowest water levels since 1890 occurred. We used simple regression models and increasingly sophisticated Markov chain models plus non-linear parameter estimation to put down abundance changes to direct effects of flooding on population-dynamic parameters and to indirect effects of flooding through modification of interspecific competition. We found a negative effect of flood duration on abundance changes for the non-specialist species Agrostis stolonifera and Phalaris arundinacea, but no effect on Carex acuta. The specialist species, Ranunculus reptans but not Littorella uniflora showed a positive effect of flooding. Data analysis revealed an unambiguous competitive hierarchy with the two graminoid species (C. acuta, P. arundinacea) being superior, and the habitat specialists being most sensitive to interspecific competition. We used estimated parameters to project the community dynamics under different flooding regimes. Long-term projection showed that the original community is threatened by two non-specialist species (C. acuta and P. arundinacea). Even if this forecast was influenced by various model limitations, it may indicate irreversible changes in soil fertility during the phase of high eutrophication between 1950 and 1980. Our study demonstrated that long-term abundance relevés combined with Markov modelling and predictive simulations are an important counterpart to detailed short-term studies. The combination of empirical and theoretical methods elucidates the interaction of biotic and abiotic factors in community change.     

Nanostructure of cationic lipid-oligonucleotide complexes

Complexes (lipoplexes) between cationic liposomes and single-strand oligodeoxynucleotides (ODN) are potential delivery systems for antisense therapy. The nanometer-scale morphology of these assemblies is relevant to their transfection efficiency. In this work the monocationic lipid dioleoyloxytrimethylammoniumpropane, the neutral "helper" lipid cholesterol, and an 18-mer anti-bcl2 ODN were combined at different ratios. The lipoplexes formed were characterized for the quantity of ODN bound, for the degree of lipid mixing, and for their size. The nanostructure of the system was examined by cryogenic-temperature transmission electron microscopy, augmented by small-angle x-ray scattering. Addition of ODN to cationic liposomes induced both liposome aggregation and the formation of a novel condensed lamellar phase. This phase is proposed to be stabilized by anionic single-strand ODN molecules intercalated between cationic bilayers. The proportion of cholesterol present apparently did not affect the nature of lipoplex microstructure, but changed the interlamellar spacing.     

Nanostructure of the fibrin clot

The nanostructure of the fibrin fibers in fibrin clots is investigated by using spectrometry and small angle x-ray scattering measurements. First, an autocoherent analysis of the visible light spectra transmitted through formed clots is demonstrated to provide robust measurements of both the radius and density of the fibrin fibers. This method is validated via comparison with existing small-angle and dynamic light-scattering data. The complementary use of small angle x-ray scattering spectra and light spectrometry unambiguously shows the disjointed nature of the fibrin fibers. Indeed, under quasiphysiological conditions, the fibers are approximately one-half as dense as their crystalline fiber counterparts. Further, although the fibers are locally crystalline, they appear to possess a lateral fractal structure.     

Water table fluctuations and groundwater supply are important in preventing phosphate-eutrophication in sulphate-rich fens: Consequences for wetland restoration

Nitrate leaching from agricultural land leads to oxidiation of FeS _x in FeS _x -containing subsoils resulting in SO ₄ ²⁻ mobilisation. Pollution of the groundwater with SO ₄ ²⁻ causes a higher availability of o-PO ₄ ³⁻ , eutrophication and loss in biodiversity in groundwater fed fens with stagnating surface water. Under natural conditions, fens along the river Meuse are continuously fed by groundwater that besides SO ₄ ²⁻ mostly also contains high concentrations of NO ₃ ⁻ and bivalent cations (Ca²⁺ and mg²⁺). During summer groundwater input is restricted resulting in periodic drought. Under these conditions no SO ₄ ²⁻ induced o-PO ₄ ³⁻ eutrophication occurs. Periodic drought and a high discharge of NO ₃ ⁻ , have a strong effect on S and P biogeochemistry in sulphate-rich fens. NO ₃ ⁻ inhibits SO ₄ ²⁻ reduction and concomitant o-PO ₄ ³⁻ mobilisation in fen sediments by being an energetically more favourable electron acceptor. In addition, NO ₃ ⁻ is capable of oxidising reduced Fe compounds, including FeS _x , increasing the amount of oxidised Fe in the sediment capable of binding o-PO ₄ ³⁻ . Periodic drought is important in reincreasing the concentration of oxidised Fe in the top layer of S-rich sediments preventing o-PO ₄ ³⁻ mobilisation and an undesirable vegetation development. Damming of surface water, in order te restore desiccated sulphate-rich fens, prevents periodic drought and decreases groundwater input. This leads to NO ₃ ⁻ depletion, stimulation of SO ₄ ²⁻ reduction, Fe depletion, o-PO ₄ ³⁻ mobilisation and, in contrast to what was hoped for, in massive growth of algae, lemnids and fast growing wetland grasses. Therefore discharge of NO ₃ ⁻ – rich groundwater and the fluctuation of the water table are vital for succesful restoration of desiccated sulphate-rich fens. Successful rewetting of these type of fens, without causing stagnation of surface water and without preventing periodic drought, can be achieved by raising the water table to levels below the potential groundwater table using a controllable dam.     

Nanostructure and nanomechanics of live Phaeodactylum tricornutum morphotypes

The ultrastructure and mechanical properties of the fusiform, triradiate and ovoid morphotypes of Phaeodactylum tricornutum were investigated using atomic force microscopy. Using topographic imaging, we showed that the surface of the ovoid form is rougher than those of the two other specimens, and coated with an outer layer of extracellular polymers. Using spatially resolved force–indentation curves, we found that the valve of the ovoid form is about five times stiffer (Young modulus of ∼500 kPa) than those of the other forms (∼100 kPa), a finding fully consistent with the fact that only the ovoid form has a silica valve, whereas the valves in the other two consist mostly of organic material. Notably, the girdle region of both fusiform and ovoid forms was five times softer than the valve, suggesting that this region is poor in silica and enriched in organic material. For the triradiate form, we showed the arms to be softer than the core region, presumably as a result of organelle localization. Last, we observed mucilaginous footprints of moderate stiffness (∼100 kPa) in the vicinity of ovoid diatoms, which we believe are secreted extracellular polymers.     

Water loss and malate fluctuations during the day for plants in the southern Namib desert

Summary The daily course of transpiration for 12 different plants growing in the southern Namib desert was investigated. Sclerophyllous species with C₃ photosynthesis were the most effective water savers followed by succulents exhibiting CAM, while C₃ pathway-succulents lose as much water as malacophyllous species. The different species showed either one or two peaked patterns of both transpiration and leaf conductance. With C₃ plants the most common pattern is a single morning peak in leaf conductance followed by decreases in conductance over the remainder on the day. With CAM succulents leaf conductance is high in the morning, shows a pronounced midday depression and increases in the early afternoon when the malate pool is depleted, but malate consumption did not start earlier than 4 h after dawn. Seven of nine investigated C₃ plants had rather high contents of malate, up to 180 mol·g^-1 dry matter. In these plants the malate content increased with increasing leaf conductance and disappeared when leaf conductance declined in the evening, indicating that malate was synthesized during photosynthesis.Dedicated to Prof. Dr. O.H. Volk (Würzburg) for his 80th birthday     

Nanostructure Initiator Mass Spectrometry for tissue imaging in metabolomics: future prospects and perspectives

Mass spectrometry-based metabolomics provides a new approach to interrogate mechanistic biochemistry related to natural processes such as health and disease. Physiological and pathological conditions, however, are characterized not only by the identities and concentrations of metabolites present, but also by the location of metabolites within a tissue. Unfortunately, most relevant MS platforms in metabolomics can only measure samples in solution, therefore metabolites are typically extracted by tissue homogenization. Recent developments of imaging-MS technologies, however, have allowed particular metabolites to be spatially localized within biological tissues. In this context, Nanostructure-Initiator Mass Spectrometry (NIMS), a matrix-free technique for surface-based analysis, has proven an alternative approach for tissue imaging of metabolites. Here we review the basic principles of NIMS for tissue imaging and show applications that can complement LC/MS and GC/MS-based metabolomic studies investigating the mechanisms of fundamental biological processes. In addition, the new surface modifications and nanostructured materials herein presented demonstrate the versatility of NIMS surface to expand the range of detectable metabolites.     

Field Enhancement of Tip with Spiral Nanostructure

Recently, tips suitable for illuminating from top to bottom have received great attraction due to high energy utilization and easiness of constituting array, which can increase scan efficiency to realize large-area rapid microprobe scan. In this work, we study the field enhancement on a cone tip with a planar Archimedes’ spiral nanostructure under an illumination of circularly polarized light. By means of a simulation based on phase matching theory and finite-difference time-domain, it is demonstrated that electric field intensity in close proximity to the tip, which is contributed by evanescent mode (EM) and propagating mode (PM) of surface plasmon polaritons (SPPs) induced from Archimedes’ spiral slits, increases 3 orders of magnitude than that of the incoming beam. The beam induced by the tip has a full width at half maximum of 10 nm (~0.015λ₀).     

DNA四面体纳米结构及其在生物技术领域的应用进展

DNA四面体纳米结构是一种通过精确巧妙的DNA序列设计,应用碱基互补配对的原则,由4条单链自动杂交结合而成的具有四面体形状的DNA三维纳米结构。其具有良好的生物相容性和优异的细胞膜通透性,同时制备较为简单且产率高、尺寸以及动态性均可调节,因而在微生物鉴定、医学诊断和生物传感器等领域得到了广泛的研究与应用。基于此,介绍了DNA四面体纳米结构及其功能化修饰,综述了DNA四面体纳米结构在生物技术领域的应用进展,以期为推动DNA四面体纳米结构的研究、拓宽其应用领域提供参考。     

Metformin-Loaded Hyaluronic Acid Nanostructure for Oral Delivery

The objective of this study was to develop a nanodelivery system containing a mucoadhesive polymer hyaluronic acid (HA) for oral delivery. Metformin was used as a model drug. Blank and drug-loaded HA nanostructures were prepared by precipitation method and characterized for particle size (PS), zeta potential (ZP), physical stability (over 65 days), surface morphology, moisture content, and physical state of the drug in the nanostructures. The cytotoxicity and hemolysis potential of the delivery system was assessed in Caco-2 cells and whole human blood, respectively. The in vitro release of metformin and its uptake in Caco-2 cells was evaluated using high-performance liquid chromatography. Ex vivo permeability of metformin was measured through goat intestinal membrane. The nanoparticles were physically stable and neutrally charged with an average PS of 114.53?±?12.01 nm. This nanodelivery system existed as nanofibers containing metformin in a crystalline state. This delivery system released the drug rapidly with >?50% of metformin released within 1 h. Cellular uptake studies on Caco-2 cells indicated higher uptake of metformin from nanoparticle as compared to metformin in solution, up to first 45 min. Ex vivo permeability studies on the other hand showed a higher metformin permeability from solution relative to that from nanoparticles through the goat intestinal membrane. Metformin nanoparticles were non-toxic at therapeutic concentrations in Caco-2 cells and showed no hemolytic effect to RBCs. This study indicates the preparation, characterization, as well as the potential use of HA nanostructures for oral delivery.     

Fabrication of Large-scale Nanostructure by Langmuir-Blodgett Technique

Monolayer of polymer latex spheres was prepared at the air/water interface and deposited onto glass slides through Langmuir-Blodgett （LB） technique. Large-scale, high quality hexagonally close-packed domains were found in scanning electron microscopic pictures. Details of the monolayer-forming ability were discussed. Suitable surface characteristics of the colloidal particles, especially the hydrophilic and hydrophobic properties, are the keys for the formation of ordered monolayer films. The film can be transferred onto various kinds of substrates, even high curvature surface articles, such as fibers, decorations etc, can also be used as substrates. The advantages of this fabrication method of polymer latex spheres monolayer are fast, flexible, simple and very neat.     

Cytoskeleton dynamics: fluctuations within the network

Out-of-equilibrium systems, such as the dynamics of a living cytoskeleton (CSK), are inherently noisy with fluctuations arising from the stochastic nature of the underlying biochemical and molecular events. Recently, such fluctuations within the cell were characterized by observing spontaneous nano-scale motions of an RGD-coated microbead bound to the cell surface [Bursac et al., Nat. Mater. 4 (2005) 557-561]. While these reported anomalous bead motions represent a molecular level reorganization (remodeling) of microstructures in contact with the bead, a precise nature of these cytoskeletal constituents and forces that drive their remodeling dynamics are largely unclear. Here, we focused upon spontaneous motions of an RGD-coated bead and, in particular, assessed to what extent these motions are attributable to (i) bulk cell movement (cell crawling), (ii) dynamics of focal adhesions, (iii) dynamics of lipid membrane, and/or (iv) dynamics of the underlying actin CSK driven by myosin motors.     

Protein hydrogen exchange mechanism: local fluctuations

Experiments were done to study the dynamic structural motions that determine protein hydrogen exchange (HX) behavior. The replacement of a solvent-exposed lysine residue with glycine (Lys8Gly) in a helix of recombinant cytochrome c does not perturb the native structure, but it entropically potentiates main-chain flexibility and thus can promote local distortional motions and large-scale unfolding. The mutation accelerates amide hydrogen exchange of the mutated residue by about 50-fold, neighboring residues in the same helix by less, and residues elsewhere in the protein not at all, except for Leu98, which registers the change in global stability. The pattern of HX changes shows that the coupled structural distortions that dominate exchange can be several residues in extent, but they expose to exchange only one amide NH at a time. This "local fluctuation" mode of hydrogen exchange may be generally recognized by disparate near-neighbor rates and a low dependence on destabilants (denaturant, temperature, pressure). In contrast, concerted unfolding reactions expose multiple neighboring amide NHs with very similar computed protection factors, and they show marked destabilant sensitivity. In both modes, ionic hydrogen exchange catalysts attack from the bulk solvent without diffusing through the protein matrix.     

Water level fluctuations in Lake Baringo,Kenya, during the 19th and 20th centuries: Evidence from lake sediments

This article presents a fossil diatom-based, semi-quantitative reconstruction of water level fluctuations for Lake Baringo over the past 200 years as a consequence of climatic variations. A 285 cm long sediment core sample was collected using a Rod-Operated Single-drive Stationary Piston corer. Lake level was inferred using indices based on the proportion of planktonic to benthic diatom taxa (P/B ratio). The sediment archive presented distinct zones dominated by planktonic and benthic diatom flora. An initial transgression in the early 19th century was characterised as a shallow water environment dominated by planktonic Aulacoseira spp. This was a response to extreme drought during the late 18th to early 19th century. Mid-19th century was defined by a high lake stand. The late 19th to early 20th centuries experienced low water level following the widely documented aridity at the time. The mid-20th century was marked by a spectacular rise in water level that coincided with remarkably wet years during the early 1960s and late 1970s. The first decade of the 21st century witnessed widespread changes in water level. The proxy records show that lake ramping and drawdown over the years follow approximately 50-year climatic cycles.     

Nanostructure analysis using spatially modulated illumination microscopy

We describe the usage of the spatially modulated illumination (SMI) microscope to estimate the sizes (and/or positions) of fluorescently labeled cellular nanostructures, including a brief introduction to the instrument and its handling. The principle setup of the SMI microscope will be introduced to explain the measures necessary for a successful nanostructure analysis, before the steps for sample preparation, data acquisition and evaluation are given. The protocol starts with cells already attached to the cover glass. The protocol and duration outlined here are typical for fixed specimens; however, considerably faster data acquisition and in vivo measurements are possible.     

Nanostructure and nanomechanics analysis of lymphocyte using AFM: From resting,activated to apoptosis

The ultrastructural and mechanical properties of single resting, activated and apoptosis lymphocyte have been investigated by atomic force microscopy (AFM). Using topographic imaging, we showed that the surface of the resting lymphocyte is smooth, while lymphocyte activation and apoptosis are often accompanied by changes in cell morphology. The apoptosis lymphocyte is rougher than those of the two other morphotypes, and coated with many big particles. Using spatially resolved force–distance curves, we found that the valve of the activated lymphocyte is about two to three times stiffer (Young's modulus of ～20 kPa) than those of the two other morphotypes (5–11 kPa). These results can improve our understanding of the mechanical properties of cells during growth and differentiation.