乳山近海大型底栖动物功能摄食类群

根据2006年12月至2007年11月对乳山近海的调查样品,报道了该海域大型底栖动物功能摄食类群的生态学状况.结果表明:乳山近海大型底栖动物以食底泥者和肉食者占较大优势,其次为滤食者,食碎屑者、杂食者、植食者相对丰度较小;食底泥者的优势种为中蚓虫、不倒翁虫、丝异蚓虫和轮双眼钩虾,肉食者的优势种为寡鳃齿吻沙蚕、圆筒原盒螺和纽虫,滤食者的优势种为滑理蛤、菲律宾蛤仔、金星蝶铰蛤和江户明樱蛤;各功能摄食类群分布受有机负荷和底质类型限制;基于大型底栖动物功能类群的生态参数评价结果表明,乳山近海大型底栖动物群落健康状况由虚弱趋于不稳定,大部分站位大型底栖动物群落受到轻度扰动,底栖生态质量状况较优良;冗余分析表明,盐度、水温、总氮、悬浮物、溶解氧、总有机碳和硅酸盐等7个因子与乳山近海大型底栖动物功能摄食类群存在较显著的相关性.     

山东近海鱼类群落分类多样性

根据相关文献整理了山东近海鱼类名录,并根据1998—2009年山东近海鱼类调查名录,应用平均分类差异指数(Δ+)和分类差异变异指数(Λ+)研究了鱼类分类学多样性特征。结果表明,山东近海鱼类名录包括2纲28目91科169属225种,1998年调查仅2纲11目41科58属62种,2006年调查为1纲13目41科71属78种,2009年调查为1纲9目32科55属62种。1998年—2009年调查鱼类种类远远低于鱼类名录记录的种数,分类阶元包含指数较低,平均每属包含1.1种。根据山东近海鱼类名录计算鱼类平均分类差异指数为66.1,分类差异变异指数为141.7;1998—2009年历次调查鱼类平均分类差异指数在60.9—62.7之间,分类差异变异指数在65.4—92.3之间。将1998—2009年历次调查鱼类群落分类多样性指数计算值叠加到山东近海鱼类总名录的95%置信漏斗曲线图,结果表明大部分调查值在置信漏斗曲线之外,目前山东近海鱼类分类多样性已大幅下降。     

珠江流域常见鱼类及大型底栖动物DNA条形码空缺分析

条形码数据库是开展基于DNA的生物监测关键先决条件。为在珠江流域有效开展基于DNA的生物监测,迫切需要了解物种DNA条形码的覆盖或空缺状况。整理了珠江流域常见鱼类和大型底栖动物的物种清单,从National Center and Biotechnology Information (NCBI)数据库中检索了物种清单的DNA条形码序列,分析了常见鱼类(包括线粒体组和12s rRNA基因)和大型底栖动物(包括线粒体组、COI和18s rRNA基因)的DNA条形码覆盖范围和空缺程度。数据分析表明：(1)珠江流域共记录了常见鱼类221种,隶属于2纲18目51科和137属;常见大型底栖动物105种/属,隶属于6纲14目53科。(2)共检索到常见鱼类线粒体组序列913条和12s rRNA基因序列962条,分别占总物种的81.45%和57.92%;有12.67%的物种没有线粒体组和12s rRNA基因序列,若将条形码阈值设置为至少包含5个参考序列,则空缺度上升至52.94%;(3)共检索到常见大型底栖动物线粒体组65条序列、COI基因26,988条序列和18s rRNA基因175条序列,分别占总种/...     

分类多样性在大型底栖动物生态学方面的应用:以黄海底栖动物为例

根据文献资料,系统整理了黄海大型底栖动物物种名录,并得到了其平均分类差异指数和分类差异变异指数的理论平均值及95%置信区间漏斗图。结果表明,黄海共有大型底栖动物1,360种,分属于17门35纲91目368科842属。其平均分类差异指数的理论平均值为93.7,分类差异变异指数为213.6。将已知受到中度扰动的胶州湾部分站位真实值叠加到平均分类差异指数的95%置信区间漏斗图中,发现全部站位均显著低于95%置信区间,显示了平均分类差异指数在海洋污染监测方面的良好应用前景。     

长白山源头溪流底栖动物群落结构季节动态

源头溪流是河流生态系统物质循环和能量流动的重要区域,对底栖动物的生物多样性维持具有重要意义。目前,针对我国源头溪流底栖动物群落结构的研究薄弱,对长白山源头溪流底栖动物季节动态的研究尚未见报道。采用野外原位定量取样的方法,力图阐释长白山源头溪流底栖动物群落结构的季节动态特征及其主要环境驱动因子。研究结果表明:(1)共计采集底栖动物90个分类单元,隶属于3纲9目38科。其中,水生昆虫85属,占绝对优势。底栖动物群落结构的季节动态明显,底栖动物密度及多样性在夏、秋季显著高于冬季和春季,并在冬季达到最低值。(2)底栖动物功能摄食类群以收集者占优势,其次为撕食者、捕食者和刮食者,滤食者相对丰度最低。不同功能摄食类群的季节动态不一致,但密度和物种丰富度整体表现为秋季最高。(3)水温、凋落叶分布和流速是长白山源头溪流底栖动物群落结构季节动态的主要环境驱动因子。本研究可为长白山源头溪流后续相关研究及长白山松花江水系生态修复提供基础数据支持及参考。     

流溪河底栖动物群落结构及基于完整性指数的健康评价

2015年2月、6月、9月、12月对流溪河21个采样河段底栖无脊椎动物进行了调查。结果表明:4个季节共检出54科95属114种,其中昆虫纲81种,占总数71.05%;软体动物门的腹足纲、瓣鳃纲共23种,占总数20.18%;蛭纲、寡毛纲和甲壳纲等10种,占总数的8.77%。根据6个参照点和15个受损点的底栖动物数据,对21个生物指数进行分布范围、判别能力和Pearson相关性分析,确定流溪河底栖动物完整性指数(B-IBI)指标体系,该体系由多样性指数、EPT分类单元数、摇蚊百分数、颤蚓百分数、敏感类群分类单元数和耐污类群百分数构成。采用比值法计算各生物指数并对各指数值加和得到B-IBI指数值。评价结果表明:在21个河段中,5个为健康,3个为亚健康,10个健康评价为一般,3个较差;总体来看,流溪河处于一般的健康状态;流溪河上游(桂峰水、石坝河、吕田河)等源头支流处于相对健康状态;干流中下游、牛栏河及其他多处支流水质一般或较差。分析表明:上述方法适用于评价流溪河水质健康,可用该方法进行长期监测评价;人类活动程度对底栖动物群落结构影响较大。     

被子植物APG分类系统评论

随着植物分子系统学的兴起,被子植物系统发育研究取得了举世瞩目的进展。被子植物系统发育组提出了基于DNA证据的被子植物在目、科分类阶元上的分类系统,简称APG系统。本文简要概括了APG系统的主要成就:(1)验证了被子植物分类系统的可重复性和可预言性;(2)解决了一些依据形态学性状未能确定的类群的系统位置;(3)证明了将被子植物一级分类分为双子叶植物和单子叶植物的不自然性;(4)证实了单沟花粉和三沟花粉在被子植物高级分类单元划分中的重要性;(5)发现雄蕊的向心发育和离心发育在多雄蕊类群中是多次发生的,不应作为划分纲或亚纲的重要依据;(6)支持基于形态学(广义)性状划分的大多数科是自然的;(7)将一些长期认为自然的科四分五裂。同时,我们指出了尚需深入研究的几个问题:(1)如何将以分子数据建立的系统和以综合形态学证据建立的系统相协调;(2)依据APG系统的研究结果需要创立新的形态演化理论;(3)只以"单系群"作为划分科、目的依据值得商榷;(4)APG系统中一些目的分类没有可信的形态学共衍征;(5)依据APG系统需要做出一个自然系统的目、科检索表和目、科的特征集要。此外,我们对以亚洲,特别是东亚为分布中心的一些类群的系统关系或分类等级提出建议,包括八角科、芒苞草科、水青树科、火筒树科、马尾树科、七叶树科、槭树科、伯乐树科应独立为科,山茱萸科(广义)应分为山茱萸科(狭义)和蓝果树科(广义)。     

基于18S rRNA基因序列分析唇口目苔藓动物主要类群的系统发生关系

对隶属于3亚目、5次目、20科、23属共25个种类的唇口目(裸唇纲)苔藓虫18S rRNA基因部分序列进行了序列测定.结合从GenBank中获得的该类群其它7个种类的18S rRNA基因同源序列,以序列分析软件对其序列组成和变异进行了比较分析;同时,以羽苔虫(被唇纲)和管孔苔虫(窄唇纲)为外类群,以邻接法和最大简约法重建了它们的系统发生树,分析了该目主要类群系统发生关系.序列分析结果显示:经比对后序列长度为884 bp,其中保守位点241个,可变位点643个,简约信息位点357个;A,T,C和G 4碱基平均含量分别为23.8%、22.8%、24.4%和28.9%.分子系统树表明:本研究所有有囊类构成1个单系群,其中檐胞次目的几种苔虫位于皮壳次目内部;无囊类形成1个多系群,其中的亚目级(新唇口亚目)和次目级分类阶元(枝室次目、假软壁次目和隐壁次目)也都为多系发生,这些结果与前人的分子系统学研究结果大体一致,而与传统的形态分类体系间存在明显的冲突.     

新疆巩乃斯河枯、丰水期大型底栖动物群落结构与环境因子的关系

为探究新疆巩乃斯河的生态状况,团队先后在2018年10月(枯水期)和2019年6月(丰水期)对大型底栖动物群落和环境因子进行了调查,分析大型底栖动物群落结构、功能摄食类群、生活类型组成及其与环境因子的关系。研究河段共采集到大型底栖动物40种,隶属3门4纲8目27科,主要以节肢动物门为主,其中直突摇蚊亚科(Orthocladiinaespp.)、长跗摇蚊族(Tanytansinisp.)、四节蜉属(Baeitssp.)、亚美蜉属(Ameletussp.)和Cheilotrichiasp.是优势类群。经过分析发现枯、丰水期巩乃斯河大型底栖动物群落结构差异显著, T检验结果显示:枯水期大型底栖动物群落的生物密度和物种丰富度显著低于丰水期(P<0.05),两个时期大型底栖动物的生物多样性指数和均匀度无显著性差异(P>0.05)。巩乃斯河大型底栖动物功能摄食类群完整,枯、丰水期均以收集者为主;在生活类型方面,枯水期时固着型动物最相对丰度最大为43.20%,丰水期时蔓生型动物相对丰度最大为57.53%。经过对大型底栖动物和环境因子之间进行典范对应分析发现,水温是影响巩乃斯河大型底栖动物...     

宝天曼落叶阔叶林土壤细菌多样性

土壤微生物在森林生态系统中起着重要作用。高通量测序方法的出现为进一步认识土壤微生物提供了契机。本文利用Illumina Miseq高通量测序技术对宝天曼森林土壤的细菌多样性进行了初步研究。结果显示: 在31个采样点内, 随着采样点增加, 检测出不同分类水平的土壤细菌类群也在增多, 当采样点达到31个时, 检测出的土壤细菌类群达到45门163纲319目495科785属和42,632个OTU; 31个土壤样品中所检测出的细菌类群平均有34.2门114.7纲215.2目323.7科446.6属5,924.7个OTU, 其中门、纲、目分类水平上的优势类群(所占比例)分别为变形菌门(Proteobacteria)(38.30%)、α-变形菌纲(α-Proteobacteria)(18.08%)、根瘤菌目(Rhizobiales)(10.62%)。这些初步研究结果表明在一定程度上宝天曼森林土壤有较高的细菌多样性水平, 为进一步认识森林土壤细菌多样性与植物多样性关系等奠定了基础。     

The biology and ecology of lotic microcrustaceans

• 1 Copepoda, Ostracoda and ‘Cladocera’ are important meiobenthic Crustacea which can be both numerically abundant and species rich in running waters. Harpacticoids and ostracods are well adapted to benthic life because they are typical crawlers, walkers, and burrowers. Many cladocerans are substratum dwellers, but most benthic species among these can also swim. Cyclopoids which are generally good swimmers are nevertheless often bottom frequenters and actively colonise sediment interstices (the hyporheic zone).
  • 2 The subclass Copepoda includes 10 orders. With 53 families, the order Harpacticoida dominates the benthos. Only five of these families are represented in fresh waters (ca. 1 000 species and subspecies). The order Cyclopoida includes 12 families of which the Cyclopidae is well represented in freshwater habitats with 900 species and subspecies. Freshwater Ostracods belong to the order Podocopida (5 000 species) with three superfamilies occurring in running fresh waters. The group ‘Cladocera’ contains four orders, 12 families, more than 80 genera, and 450–600 freshwater species. Most of the benthic species are found in the families Chydoridae (39 genera), Macrothricidae, Ilyocryptidae and Sididae.
• 3 For each of the three major taxa, morphological characteristics are presented, specimen collection and preparation are described and references to available taxonomical keys are provided.
• 4 Biological characteristics are extremely diverse among and within the three taxa, resulting in a great variety of strategies in meiobenthic crustaceans. Characteristics of reproduction, sexual dimorphism, cyclomorphosis and population parameters (i.e. clutch size, lifespan, growth, moulting) are provided for some of the most common species.
• 5 Important differences between the three main taxa were found at the species level. Ecological requirements such as hydraulic microhabitats and geomorphologic features of the streambed are the major determinants of species diversity and abundance for benthic microcrustacea of lotic habitats. Many studies on the ecology of these communities are limited by a lack of knowledge of the life history characterisitics of lotic (especially interstitial) crustacean populations.

     

Abundance and biomass estimates of the benthic fauna in Admiralty Bay,King George Island,South Shetland Islands

Summary Quantitative benthic samples were collected along three transects in Admiralty Bay, King George Island, South Shetlands. At each of a total of 18 stations, between 15 and 250 m depth, we took 3 replicate samples with a van Veen grab. Animals collected were classed into major groups. Abundance and biomass per m² was calculated for each sampling site. Considerable population densities and high biomass values were found. Most abundant groups were Bivalvia, Polychaeta and Amphipoda, whereas the largest part of the biomass was due to Ascidiacea, Ophiuroidea, Echinoidea, Polychaeta and Bivalvia. The maximum abundance recorded was 36,000 ind m^-2 while the average was approximately 6500 ind m^-2. Maximum biomass was over 2400 g m^-2 with an average of ca. 700 g m^-2. The contribution to the total biomass by groups such as the Oligochaeta, Cumacea and Tanaidacea was higher in the inner shallow part of Admiralty Bay (Ezcurra Inlet) than in the deeper areas of the bay. Our results confirm the reports on an unusually high density and biomass of the Antarctic sublittoral benthic fauna. Sessile suspension feeders belonging to the Bivalvia, Ascidiacea, sedentary Polychaeta, and vagile scavengers of the Ophiuroidea, Amphipoda and errant Polychaeta are the most significant groups in the Antarctic Ecosystem. The total benthic biomass in Admiralty Bay, based on the present preliminary quantitative data, was estimated to be over 600,000 t. This value is probably still an underestimate.     

Coastal-marine discontinuities and synergisms: implications for biodiversity conservation

Coastal-marine biodiversity conservation must focus increasingly at the level of the land- and seascape. Five cases illustrate discontinuities and synergisms and how system changes may take place. For Caribbean coral reefs, the result of overfishing and disease has been a shrinkage in the entire system, the effects of which may cascade through the coastal seascape. For Beringia, patterns of benthic diversity are best understood in a manner that matches the multiscale, integrated dynamics of weather, ice, marine mammal feeding, and community structure. In the case of US East Coast estuaries, oyster reefs may be keystone elements, with important effects on functional diversity. Large-scale coastal systems depend upon the connectivity of fresh and marine waters in the coastal zone, having implications for the apparent stochasticity of coastal fisheries. And, for a coastal barrier-lagoon site, a state change may be described in terms of a combination of succession, the attainment of a quasi-equilibrium state, and disturbance. A profound problem for conservation is that there is very little information about the relationship between species diversity and ecological function. Coastal-marine biodiversity conservation is best addressed at the level of the land- and seascape.     

Genetic mapping of 12 marker loci in the Xp22.3-p21.2 region

Summary To provide a more precise genetic map of the p22.3–p21.2 region on the short arm of the human X chromosome, we performed multilocus linkage studies in an expanded database including 31 retinoschisis families and 40 normal families. Twelve loci from this region were examined. Although significant lod scores were observed between various pairs of markers by two-point linkage analysis, the confidence limits were found to be broad. The most likely gene order on the basis of multilocus analysis was Xpter-DXS89-DXS85-DXS16-(DXS207, DXS43)-DXS274-(DXS41, DXS92)-ZFX-DXS164-Xcen. All other alternative orders were excluded by odds of at least 401.     

The Distribution of Benthic and Hyporheic Macroinvertebrates from the Heads and Tails of Riffles

The spatial distribution of benthic (up to 0.05 m depth) and hyporheic (0.25 and 0.5 m depth) macroinvertebrates from downwelling zones at the heads of riffles and upwelling zones at the tails of riffles was examined in two studies on a 4th order chalk stream in Dorset, England. In the first study, differences in benthic and hyporheic macroinvertebrate community composition between the head and tail of a single riffle were investigated. In the second study, a replicated design involving eight riffles was used to compare benthic and hyporheic macroinvertebrate community composition both between heads and tails of the same riffles and between riffles. In the first (single riffle) study there were significantly higher mean numbers of benthic invertebrates and families at the riffle head (715 individuals and 13.8 families per 0.0225 m²) compared to the tail (192 individuals and 8.7 families). ANOSIM analysis also showed that the community structure of head and tail benthic samples was significantly different. In the second (replicated riffle) study, there were also significantly more benthic invertebrates at riffle heads ( = 594 per 0.0225 m²) compared to tails ( = 417 per 0.0225 m²), although this was not the case for families, and community structure also differed significantly between riffle heads and tails. In contrast, in the hyporheic zone, there were no significant differences between the total numbers of invertebrates in the riffle heads and tails, or between riffles, although a significant difference in family richness between riffle head and tail samples was identified in the first study. Community analysis revealed progressively poorer separation of riffle head and tail samples at 0.25 m and 0.5 m hyporheic depths. Whilst being able to identify clear differences in benthic communities from riffles heads and tails, the physically heterogeneous nature of the riffle habitats studied made it difficult to account for the consistent differences in macroinvertebrate communities observed with the physical variables measured.     

Free-living marine nematodes from San Julián Bay (Santa Cruz,Argentina)

The free-living marine nematodes of San Julián Bay dataset is based on sediment samples collected in January 2009 during the project PICT AGENCIA-FONCYT 2/33345-2005. A total of 36 samples have been taken at three locations in the San Julián Bay, Santa Cruz Province, Argentina on the coastal littoral at three tidal levels. This presents a unique and important collection for the nematode benthic biodiversity assessment as this area remains one of the least known regions in Patagonia. In total 10,030 specimens of free-living marine nematodes belonging to 2 classes, 9 orders, 35 families, 78 genera and 125 species were collected. The San Julián city site presented a very high species richness.     

Biodiversity and biogeography pattern of benthic communities in the coastal basins of India

Our understanding of coastal biogeography patterns is presently limited to certain regions and marine groups. Comprehending large-scale patterns and their underlying predictors is critical due to the changing environmental conditions. The Indian coast, bounded by two contrasting seas, the Bay of Bengal and Arabian Sea, offers an excellent opportunity to determine the most important factors influencing coastal biogeography patterns. Here we use distribution data of 2581 species belonging to three benthic groups (polychaetes, gastropods and bivalves) to evaluate the role of environmental factors and coastal currents on the biogeography patterns. Data were obtained from the bioSearch database, developed by CSIR-NIO, Goa under the Census of Marine Life programme. As measures of diversity, we used species richness as well as taxonomic distinctiveness indices. Multivariate analyses were used in identifying biodiversity patterns and correlated biogeography patterns with environmental factors. This paper points out a clear difference between the eastern and western basins of India, but also within the basins. Mainland and island fauna also showed a clear distinction. The biogeography of the Indian coast is best explained by temperature, habitat heterogeneity and coastline length. Spatiotemporal variability in the boundary currents also forms an effective barrier for the dispersal of planktonic larvae of benthic fauna. This study has identified a finer scale division of the Indian coast that can help to effectively improve conservation plans. Our study is the first to attempt to understand the benthic biogeography patterns of the Indian coast. The findings will be useful in guiding future biogeography studies of this unique and underexplored marine system.     

Taxonomy of estuarine invertebrates in Australia

An Australian estuary is primarily a marine-dominated environment, subjected to major salinity changes only after heavy rains and during flood conditions. In southeastern Australia estuarine biota are similar to those in shallow coastal bays and some of the coastal lagoons, and most taxonomic studies on estuarine fauna have occurred in this region. Several major surveys of estuarine and coastal bays have been undertaken in Australia during the past three decades and these surveys have largely provided the material for taxonomic studies of the major groups of macrobenthos. All these studies have revealed a diverse and abundant benthic macrobenthos. The composition of estuarine invertebrate fauna is compared with open exposed coasts, including fauna found in soft strata and on hard strata. Australia has a limited specialized estuarine biota much of which is restricted to particular habitats, and a highly diverse marine community which thrives in the sheltered protected waters of estuaries and the associated soft sediments. Currently, interactive computer-based keys are being developed which should greatly assist the student and the benthic ecologist to identify the fauna and prevent potential loss of data. Some aspects of the current debate of the level of taxonomic resolution required to answer various ecological questions are discussed. Finally, some comments are suggested as to future directions in which taxonomists and estuarine ecologists should proceed in order to be able to detect changes or losses of estuarine biodiversity and the loss of the associated biological information which may be critical in understanding the functioning of the estuarine ecosystem.     

Cloning and characterization of class I Mhc genes of the zebrafish,Brachydanio rerio

The zebrafish (Brachydanio rerio) offers many advantages for immunological and immunogenetic research and has the potential for becoming one of the most important nonmammalian vertebrate research models. With this in mind, we initiated a systematic study of the zebrafish major histocompatibility complex (Mhc) genes. In this report, we describe the cloning and characteristics of the zebrafish class I A genes coding for the chains of the heterodimer and thus complete the identification of all four classes and subclasses of the Mhc in this species. We describe the full class I cDNA sequence as well as the exon-intron organization of the class I A genes, including intron sequences. We identify three families of class I A genes which we designate Bree-UAA,-UBA, and -UCA. The three families originated about the time of the divergence of cyprinid and salmonid fishes. All three families are members of an ancient lineage that diverged from another, older lineage also represented in cyprinid fishes before the radiation of teleost orders. The fish class I A genes therefore evolve differently from mammalian class I A genes, in which the establishment of lineages and families mostly postdates the divergence of orders.The nucleotide sequence data reported in this Papershave been submitted to the EMBL/GenBank nucleotide sequence databases and have been assigned the accession numbers Z46776–Z46779     

East Weddell Sea echinoids from the JR275 expedition

Information regarding the echinoids in this dataset is based on the Agassiz Trawl (AGT) and epibenthic sledge (EBS) samples collected during the British Antarctic Survey cruise JR275 on the RRS James Clark Ross in the austral summer 2012. A total of 56 (1 at the South Orkneys and 55 in the Eastern Weddell Sea) Agassiz Trawl and 18 (2 at the South Orkneys and 16 in the Eastern Weddell Sea) epibenthic sledge deployments were performed at depths ranging from ~280 to ~2060 m. This presents a unique collection for the Antarctic benthic biodiversity assessment of an important group of benthic invertebrates. In total 487 specimens belonging to six families, 15 genera, and 22 morphospecies were collected. The species richness per station varied between one and six. Total species richness represents 27% of the 82 echinoid species ever recorded in the Southern Ocean (David et al. 2005b, Pierrat et al. 2012, Saucède et al. 2014). The Cidaridae (sub-family Ctenocidarinae) and Schizasteridae are the two most speciose families in the dataset. They comprise seven and nine species respectively. This is illustrative of the overall pattern of echinoid diversity in the Southern Ocean where 65% of Antarctic species belong to the families Schizasteridae and Cidaridae (Pierrat et al. 2012).