Molecular systematics of the Hyaenidae: relationships of a relictual lineage resolved by a molecular supermatrix

The four extant species of hyenas (Hyaenidae; Carnivora) form a morphologically and ecologically heterogeneous group of feliform carnivorans that are remnants of a formerly diverse group of mammalian predators. They include the aardwolf (Proteles cristatus), a termite-feeding specialist, and three species with a craniodental morphology adapted to cracking the bones of prey and/or carcasses, the spotted hyena (Crocuta crocuta), brown hyena (Parahyaena brunnea), and striped hyena (Hyaena hyaena). Hyenas have been the subject of a number of systematic studies during the last two centuries, due in large part to the extensive fossil record of the group, with nearly 70 described fossil species. Morphological studies incorporating both fossil and living taxa have yielded different conclusions regarding the evolutionary relationships among living hyenas. We used a molecular supermatrix comprised of seven nuclear gene segments and the complete mitochondrial cytochrome b gene to evaluate phylogenetic relationships among the four extant hyaenid species. We also obtained sequence data from representative species of all the main families of the Feliformia (Felidae, Herpestidae, and Viverridae) to estimate the sister group of the Hyaenidae. Maximum parsimony and maximum likelihood analyses of the supermatrix recovered identical topologies. Furthermore, Bayesian phylogenetic analyses of the supermatrix, with among-site rate variation among data partitions parameterized in three different ways, also yielded the same topology. For each phylogeny reconstruction method, all but two nodes received 100% bootstrap or 1.00 posterior probability nodal support. Within the monophyletic Hyaenidae, Parahyaena and Hyaena were joined together, with Crocuta as the sister to this clade, and Proteles forming the most basal lineage. A clade containing two species of mongoose (core Herpestidae) plus Cryptoprocta ferox (currently classified in Viverridae) was resolved as the sister group of Hyaenidae. The pattern of relationships among the three bone-cracking hyaenids (Crocuta, Hyaena, and Parahyaena) is incongruent with recent cladistic assessments based on morphology and suggests the need to reevaluate some of the morphological characters that have been traditionally used to evaluate relationships among hyenas. Divergence time estimates based on a Bayesian relaxed molecular clock indicates that hyaenids diverged from their feliform sister group 29.2 MYA, in the Middle Oligocene. Molecular clock estimates also suggest that the origin of the aardwolf is much more recent (10.6 MYA) than that implied by a cladistic analysis of morphology ( approximately 20 MYA) and suggests that the aardwolf is possibly derived from a bone and meat eating lineage of hyaenids that were present in the Late Miocene. [Hyaenidae; phylogeny; cytochrome b; nuclear gene segments; Proteles; Crocuta; Hyaena; Parahyaena.].     

Transient genital abnormalities in striped hyenas (Hyaena hyaena)

The highly masculinized genitalia of female spotted hyenas Crocuta crocuta is unique among mammals: Crocuta have no external vagina so urination, penile intromission and parturition take place through the clitoris, which mimics a fully erectile male penis. Among hyenids, virilization of external female genitalia has previously been observed only in Crocuta, so functional explanations of masculinization have focused on aspects of social ecology unique to the species. Here we first show that the striped hyena Hyaena hyaena exhibits both unusual similarity in male and female androgen concentrations and transient genital anomalies characterized by a convergence in genital appearance among young males and females. We then evaluate hypotheses regarding the evolution of genital masculinization in the Hyaenidae and other taxa. Hyaena are behaviorally solitary, so discovery of unusual genital development patterns in this species does not support any current evolutionary models for masculinization in Crocuta, which all rely on the trait originating within a highly social species. Some hypotheses can be modified so that masculinization in Crocuta represents an extreme elaboration of a preexisting trait, shared as a homology with Hyaena.     

The potential for large carnivores to act as biodiversity surrogates in southern Africa

Biodiversity in southern Africa is globally extraordinary but threatened by human activities. Although there are considerable biodiversity conservation initiatives within the region, no one has yet assessed the potential use of large carnivores in such actions. Surrogate approaches have often been suggested as one such way of capitalizing on large carnivores. Here we review the suitability of the large carnivore guild (i.e., brown hyaena Hyaena hyaena, spotted hyaena Crocuta crocutta, cheetah Acinonyx jubatus, leopard Panthera pardus, lion Panthea leo and African wild dog Lycaon pictus) to act as surrogate species for biodiversity conservation in southern Africa. We suggest that the guild must be complete for the large carnivores to fully provide their role as ecological keystones. The potential for large carnivores to act as umbrella and indicator species seems limited. However, self-sustaining populations of large carnivores may be useful indicators of unfragmented landscapes. Moreover, diversity within the large carnivore guild may reflect overall biodiversity. Although the global appeal of the large African carnivores makes them important international flagships, we stress that international conservation funding must be linked to local communities for them to be important also locally. In summary, we suggest that the flagship value of these large carnivores should be used to promote biodiversity conservation in the region, and that the suggested relationship between large carnivore diversity and overall biodiversity is empirically tested. Finally we suggest that direct conservation activities should focus on enhancing the keystone values of large carnivores through complete guild conservation and restoration.     

Studies of fossil hyaenids: the genus Adcrocuta Kretzoi and the interrelationships of some hyaenid taxa

Material of the Miocene hyaenid Adcrocuta eximia from China is analysed statistically. No heterogeneities were found within this material. Comparisons with material from Samos and Pikermi, Greece, show that no taxonomic differentiation between these three samples is warranted. Adcrocuta eximia latro from the Sivalik deposits is provisionally considered a valid subspecies. The species A. australis from Langebaanweg, South Africa is removed from Adcrocuta to the genus Chasmaporthetes. The phylogenetic position of Adcrocuta has been subject to dispute, and for this reason we present a study of the interrelationships of selected hyaenid taxa using numerical cladistic methods. Two equally parsimonious trees of length 47 and consistency index 0.766 were found. Adcrocuta is placed as a sister-group to the Recent Crocuta crocuta, and not as a separate clade as suggested by other workers. Recent hyaenids form a crown-group which does not extend deep into the cladogram. Hyaena hyaena and H. brunnea are not sister-groups, and we resurrect the genus Parahyaena for the latter species.     

Coprolites as a source of information on the genome and diet of the cave hyena

We performed high-throughput sequencing of DNA from fossilized faeces to evaluate this material as a source of information on the genome and diet of Pleistocene carnivores. We analysed coprolites derived from the extinct cave hyena (Crocuta crocuta spelaea), and sequenced 90 million DNA fragments from two specimens. The DNA reads enabled a reconstruction of the cave hyena mitochondrial genome with up to a 158-fold coverage. This genome, and those sequenced from extant spotted (Crocuta crocuta) and striped (Hyaena hyaena) hyena specimens, allows for the establishment of a robust phylogeny that supports a close relationship between the cave and the spotted hyena. We also demonstrate that high-throughput sequencing yields data for cave hyena multi-copy and single-copy nuclear genes, and that about 50 per cent of the coprolite DNA can be ascribed to this species. Analysing the data for additional species to indicate the cave hyena diet, we retrieved abundant sequences for the red deer (Cervus elaphus), and characterized its mitochondrial genome with up to a 3.8-fold coverage. In conclusion, we have demonstrated the presence of abundant ancient DNA in the coprolites surveyed. Shotgun sequencing of this material yielded a wealth of DNA sequences for a Pleistocene carnivore and allowed unbiased identification of diet.     

Craniological observations on Hyaena and Crocuta (Mammalia)

The results are presented of a comparative study of certain features of the cranial osteology of Hyaena hyaena (Brisson) and Crocuta crocuta (Erxleben), of the atlas and axis vertebrae and of the associated cranial and nuchal musculature. Observable osteological differences between the two forms are shown to be correlated with the degree of development of particular muscles and thus with the functional activity of the jaws in the seizing and carrying of prey. Secondary sexual characters are more pronounced in the male than in the female of either form.     

Limiting factors of Striped Hyaena,Hyaena hyaena,distribution and densities across climatic and geographical gradients (Mammalia: Carnivora)

Few previous studies on the factors that affect Striped Hyaena (Hyaena hyaena Linnaeus, 1758) occurrence and densities were done on geographically unrelated populations using different methodologies. In Israel, hyaenas occur throughout the country's steep climatic and geographical gradients, presenting a unique opportunity to study densities and habitat use across adjacent ecosystems using a unified methodology and test previous conceptions regarding the species’ habitat selection. We collected hyaena abundance-absence data using 1440 camera traps placed at 80 sites (2012– 2016). Site location ranged from hyper-arid deserts to dense Mediterranean shrubland. We assessed the effect of climate, habitat structure, elevation, geomorphological attributes (proxy for den availability), and anthropogenic development (proximity to settlements and agriculture) on hyaena densities using N-mixture models. Hyaena densities were negatively affected by anthropogenic development, and were limited by den availability. Hyaena densities did not follow a climatic or geographic gradient. Densities were highest at hyper-arid deserts and Mediterranean coastal shrublands. Despite the former conception that hyaenas prefer semi-arid open habitats and avoid extreme deserts and dense vegetation, we show that hyaenas use and even thrive in these habitats when geomorphological conditions are suitable and resources are available.     

The primary structure of the hemoglobin from the aardwolf (Proteles cristatus, Hyaenidae)

The hemoglobin of the aardwolf (Proteles cristatus) contains only one component. In this paper, we are presenting its primary structure. The globin chains were separated by high-performance liquid chromatography and the sequences determined by automatic liquid and gas-phase Edman degradation of the chains and their tryptic peptides. The alpha- as well as the beta-chains show 20 exchanges compared with the corresponding human chains. The difference to the masked palm civet (Paguma larvata) and the spotted hyaena (Crocuta crocuta) is marked by 16 and 4 replacements in the alpha-chains and by 10 and 1 in the beta-chains, thus supporting the hyaenid character of the aardwolf. The exchanges at contact positions are shared by other carnivoran hemoglobins.     

The holotypes of the upper Pleistocene Crocuta crocuta spelaea (Goldfuss, 1823: Hyaenidae) and Panthera leo spelaea (Goldfuss, 1810: Felidae) of the Zoolithen Cave hyena den (South Germany) and their palaeo‐ecological interpretation

The rediscovered holotype skulls of Late Pleistocene Panthera leo spelaea ( Goldfuss, 1810 ) (Felidae) and Crocuta crocuta spelaea ( Goldfuss, 1823 ) (Hyaenidae) from the Zoolithen Cave at Burggeilenreuth, southern Germany, are discussed. The cave became famous mainly due to its rich cave bear bone remains from the late Saalian (OIS 6–8) to Eemian/Weichselian (OIS 3–6) including additionally a third holotype of Ursus spelaeus Rosenmüller, 1794 (Ursidae). The ‘Felis spelaea’ holotype represents an adult male with a strong bite mark on the saggital crest, which was in an early stage of healing. Compared with other European Late Pleistocene lion skulls and skeletons, and with modern African lions, it provides evidence of intraspecific conflict between male Ice Age lions. The holotype of ‘Hyaena spelaea’ is one of several hundred hyena remains from a well‐frequented hyena den cave. The cave was used intensively by Late Pleistocene hyena clans, for collecting lion carcasses in addition to their accustomed prey, as happened in many caves throughout Europe. Ice Age spotted hyena clans might have killed Ice Age steppe lions for many reasons, such as fights over prey and territory, and the protection of cubs, but they did not always scavenge on their carcasses. © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society, 2008, 154 , 822–831.     

Studies of fossil hyaenids: the genus Adcrocuta Kretzoi and the interrelationships of some hyaenid taxa

Material of the Miocene hyaenid Adcrocuta eximia from China is analysed statistically. No heterogeneities were found within this material. Comparisons with material from Samos and Pikermi, Greece, show that no taxonomic differentiation between these three samples is warranted. Adcrocuta eximia latro from the Sivalik deposits is provisionally considered a valid subspecies. The species A. australis from Langebaanweg, South Africa is removed from Adcrocuta to the genus Chasmaporthetes . The phylogenetic position of Adcrocuta has been subject to dispute, and for this reason we present a study of the interrelationships of selected hyaenid taxa using numerical cladistic methods. Two equally parsimonious trees of length 47 and consistency index 0.766 were found. Adcrocuta is placed as a sister-group to the Recent Crocuta crocuta , and not as a separate clade as suggested by other workers. Recent hyaenids form a crown-group which does not extend deep into the cladogram. Hyaena hyaena and H. brunnea are not sister-groups, and we resurrect the genus Parahyaena for the latter species.     

Pleistocene Carnivora (Mammalia) from Tighennif (Ternifine), Algeria

The site of Tighennif (= Ternifine) in Northern Algeria, well-known for its Homo mauritanicus (= Homo rhodesiensis?) remains, and probably dating to the late Calabrian, yielded a large assemblage of terrestrial carnivores. Some are identical or probably identical with extant species: Crocuta crocuta and Hyaena hyaena (Hyaenidae), Felis silvestris (Felidae), Mellivora capensis and Poecilictis cf. libyca (Mustelidae), and Vulpes cf. rueppelli (Canidae). In addition, among felids there is an unidentified leopard-like form; a smaller, more common species assigned to Lynx sp. (a genus quite rare in Africa) but which is certainly different from modern forms, an Homotherium that seems to be the last occurrence of the machairodonts in Africa, and a Panthera aff. leo, which is unfortunately too poorly known to be named. Rare bears do not display all derived features of later North African U. bibersoni. Among canids, the Nyctereutes-like jackal Lupulella mohibi is an endemic North African form known until the late middle Pleistocene, and the hunting dog Lycaon magnus is also clearly distinct from the modern species. A single new species is described, Enhydrictis hoffstetteri, a large, otter-like member of the Mustelidae, of a genus that was previously unknown from Africa, and certainly testifies to North–South dispersal across the Mediterranean at some time during the early Pleistocene.     

Rabies Virus and Canine Distemper Virus in Wild and Domestic Carnivores in Northern Kenya: Are Domestic Dogs the Reservoir?

Rabies virus (RV) and canine distemper virus (CDV) can cause significant mortality in wild carnivore populations, and RV threatens human lives. We investigated serological patterns of exposure to CDV and RV in domestic dogs (Canis familiaris), African wild dogs (Lycaon pictus), black-backed jackals (Canis mesomelas), spotted hyenas (Crocuta crocuta), striped hyenas (Hyaena hyaena) and African lions (Panthera leo), over a 10-year period, in a Kenyan rangeland to assess the role domestic dogs may play in the transmission dynamics of these two important canid pathogens. Observed patterns of RV exposure suggested that repeated introduction, rather than maintenance, occurred in the wild carnivore species studied. However, RV appeared to have been maintained in domestic dogs: exposure was more likely in domestic dogs than in the wild carnivores; was detected consistently over time without variation among years; and was detected in juveniles (≤1-year-old) as well as adults (>1-year-old). We conclude that this domestic dog population could be a RV reservoir. By contrast, the absence of evidence of CDV exposure for each carnivore species examined in the study area, for specific years, suggested repeated introduction, rather than maintenance, and that CDV may require a larger reservoir population than RV. This reservoir could be a larger domestic dog population; another wildlife species; or a “metareservoir” consisting of multiple interconnected carnivore populations. Our findings suggest that RV risks to people and wild carnivores might be controlled by domestic dog vaccination, but that CDV control, if required, would need to target the species of concern.     

SPOTTED HYAENA WHOOPS: FREQUENT INCIDENCE OF VOCAL INSTABILITIES IN A MAMMALIAN LOUD CALL

ABSTRACT

Spotted hyaena Crocuta crocuta whoops are loud calls normally produced in a sequence termed a bout. Whoops are produced by hyaenas irrespective of age or sex to display identity and convey information about the location of the caller. The majority (91%, n=460) of whoops produced by spotted hyaenas, from two geographically separate populations in southern Africa and one population in eastern Africa, showed pronounced nonlinear phenomena, predominantly subharmonics. Whoops produced by males and females had a similarly high probability of sub- harmonics, and 91.5% of the 78 bouts examined contained calls with subharmonics. These results provide evidence that nonlinear vocal phenomena are a common feature of hyaena whoops. The presence of subharmonics in whoops may be enhanced by vocal tract resonances when the fundamental frequency and first formant in the calls are close or coincide. Vocal membranes may also play a role. The high incidence of subharmonics in whoops may enhance individual recognition by adding structural complexity to calls. As 33 of 34 individually known spotted hyaenas examined in this study produced whoops containing subharmonics, it is unlikely that the production of subharmonics is confined to calls from individuals of a particular social status, sex, size, or level of developmental asymmetry, as proposed for nonlinear phenomena in the calls of other mammalian species, although variation in structural features of subharmonics may convey information about these characteristics.     

乌尔吉晚更新世动物群和古生态环境

乌尔吉地区晚更新世地层出露广泛,哺乳动物化石常有发现.乌尔吉动物群属于猛犸象—披毛犀动物群,其时代为晚更新世晚期.动物群的生态性质明显反映了当时应为寒温带湿冷草原为主间有疏林和少量灌丛的自然景观.     

Predator avoidance, breeding experience and reproductive success in endangered cheetahs, Acinonyx jubatus

I examine three hypotheses about predator avoidance behaviour: (1) avoidance increases an individual's reproductive success; (2) avoidance changes with breeding experience according to one of three described models; and (3) any reproductive or experience benefits accrued to individuals by avoidance are reflected in their spatial distribution. These hypotheses were tested on cheetahs which incur substantial juvenile mortality from predation by two larger competitors: spotted hyaenas, Crocuta crocuta, and lions, Panthera leo. To examine avoidance tactics, I played lion and hyaena vocalizations to individual female cheetahs. Lion avoidance increased with the statistical interaction between age and reproductive success, suggesting that it may be a learned behaviour, reinforced by successful reproductive events. This behaviour translated into a nonrandom spatial distribution of cheetahs with the most reproductively successful females found near lower lion densities than less successful females. Hyaena avoidance decreased with the interaction between age and reproductive success, suggesting that it is diminished by successful reproductive events, perhaps because a female cheetah switches from avoidance to using antipredator behaviours as she gets older. Hyaena avoidance behaviour translated into a spatial distribution with the most reproductively successful females found near lower hyaena densities than less successful females; however, younger females were found near lower hyaena densities than older females. Copyright 2000 The Association for the Study of Animal Behaviour.     

Diet of striped hyaena in northern Kenya

A study of striped hyaena ( Hyaena hyaena (Linnaeus, 1758)) in Lothagam, northern Kenya was conducted to understand the interactions of H. hyaena with the local Turkana people and their livestock. Data were collected from skeletal parts, fresh scats, ecological survey, and from interviews at different homesteads. Analysis of skeletal remains was broadly divided into three categories: species, skeletal part and bone damage. Insects, birds, fish, crocodile, seeds, leaves and fifteen species of mammalian prey were identified. The high proportion of livestock, dog and human remains in the bone accumulations indicate a significant dependence on the lifestyles of the local Turkana people. The study provides evidence to suggest that striped hyaenas predate on small livestock and demonstrate an opportunistic behaviour, which enables them to survive as the largest carnivore in this marginal environment. A greater abundance of bones are associated with striped hyaena dens than with those of the spotted hyaena ( Crocuta crocuta (Erxleben, 1777)). Bone modification by the striped hyaena differs from spotted hyaena bone modification. Bone breakage patterns can be attributed to the relative specific gravity, degree of epiphyseal closure and nutritive fat content of bones.     

The Pachycrocuta and Hyaena lineages (plio-pleistocene and extant species of the Hyaenidae). Their relationships with miocene ictitheres: Palhyaena and Hyaenictitherium

The large «crocutoïd hyaenas from the Plio-Pleistocenedeposits of Eurasia do not belong to the same lineage as the extant species Hyaena hyaena and must be referred to the genus PachycrocutaKretzoi, of which an emended diagnosis is given. This revision takes into account some undescribed or ill-known specimens from Russia, China and Africa. They definitely establish that Pachycrocuta ranged over Eurasia, from West Europe to East China, as early as the early Villafranchian at least, and that it was present in North Africa too; a large sample from the Odessa Catacombs affords an estimation of the intraspecific variation in the Ruscinian species, H. pyrenaica, known until now by only a few specimens from the western part of the Mediterranean basin, and it shows H. pyrenaica to be the ancestral form of the Villafranchian Eurasian species P. perrieri, from which derived P. brevirostris, the last species of the lineage, as previously shown by other authors.It appears that the “Hyaena lineage evolved simultaneously in Africa; we knew already that the root of this lineage is H. abronia, a species from the late Miocene of South Africa whose generic attribution is discussed relative to some Ictitheres from Shan-Si, Samos, Sahabi and Klein Zee. The hypothesis of a common African origin of the two lineages is not excluded, if not demonstrated. The relationships of the Pleistocene European species H. prisca and that of the extant African species H. brunnea are discussed.     

Carnivores from the Early Pleistocene hominid-bearing Trinchera Dolina 6 (Sierra de Atapuerca, Spain).

The carnivores from Trinchera Dolina level 6 (TD6) in Sierra de Atapuerca include Ursus sp., Crocuta crocuta, Mustela palerminea, Lynx sp., Canis mosbachensis and Vulpes praeglacialis. Approximately 80 human remains belonging to Homo antecessor were found in the Aurora Stratum (AS): located in the upper part of the TD6 level (TD6, T36-43). The carnivores from AS are taxonomically similar to the rest of the TD6 level, differing only in the occurrence of Lynx sp. The spotted hyaena (Crocuta crocuta) inhabited the Atapuerca Sierra during the Early Pleistocene and up to the Middle Pleistocene, after which it is absent. According to palaeomagnetic, U/Th and ESR results, the fossils from TD6 are dated to the Early Pleistocene, which is the earliest certain occurrence in Europe of Crocuta crocuta. It is associated with Mimomys savini, the arrival of which in Europe can be correlated with the beginning of the Early Biharian. Crocuta crocuta may have arrived during the late Early Pleistocene ("Bavelian complex"), and subsequently invaded the rest of the continent during the Middle and Late Pleistocene. Atapuerca TD6-AS represents the most ancient deposits in Europe where Homo and spotted hyaenas coexisted and, they probably competed ecologically. The carnivores from TD6 are biochronologically consistent with the end of the Early Pleistocene or early Cromerian (corresponding with the Biharian biochron). The timespan could correspond with oxygen isotope stages 19, 20 or 21.     

A behavior model for Australopithecus africanus

The fossil remains of Australopithecus africanus attest to the widespread practice of homicide and cannibalism. Among living carnivores and primates, the only species to exhibit both cannibalism and intraspecific killing on this scale are Canis lupes, Crocuta crocuta, and Panthera leo. These species share a common diet and a multi-male, territorial group social structure. They probably also shared that with A. africanus. Contemporary primitive societies have more vegetal matter in their diets than these social carnivores but they exhibit similar behavior. This suggests that sometime in the recent past they had more meat in their diets.     

The diet of the striped hyena in Nepal's lowland regions

Striped hyenas (Hyaena hyaena) are extremely rare in Nepal, and only a few people have studied them in their natural forest and grassland habitat. Their rarity is due to anthropogenic pressures such as hunting, habitat modification, being killed on roads, and depletion of their natural prey. Here, we studied the feeding ecology of hyenas in lowland, Nepal. We employed an opportunistic sampling to collect hyena scats in a range of habitats and the line transect sampling to identify the prey of the hyena in the study site. We collected 68 hyena scats between 2015 and 2018. Most of the hyena scat (39.7%) was found in the Churia Hill forest followed by riverbed (26.4%), mixed forest (14.7%), Sal (Shorea robusta)‐dominated forest (11.7%), and grassland area (7.3%). We found eleven mammalian prey species, plants, and some unidentified items in the hyena scats. The frequency of occurrence and relative biomass of the medium‐sized wild boar (Sus scrofa) were higher than other smaller prey species such as hare (Lepus nigricollis) and rhesus macaque (Macaca mulatta). Similarly, the proportion of large prey species such as nilgai (Boselaphus tragocamelus) in the hyena diet was lower compared with wild boar, hares, and rhesus macaques indicating medium‐sized wild boar is the most preferred prey species. Livestock contributed 17.3% of the total dietary biomass. Domesticated species such as goats, sheep, cows, and even dogs were found in the diet of hyenas. Predation of livestock by hyenas could cause conflict, especially if this ongoing issue continues in the future. Rather, more conservation effort is required in lowland areas of Nepal to protect the hyenas' natural prey species, particularly in wildlife habitats to reduce the lure of taking domestic livestock. Similarly, conservation education at the local level and active involvement of government authorities in the conservation of this species might be helpful to mitigate human–hyena conflict in the human‐dominated landscape.